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Protein

Probable conjugal transfer protein TraB

Gene

traB

Organism
Sinorhizobium fredii (strain NBRC 101917 / NGR234)
Status
Reviewed-Annotation score: -Protein predictedi

Functioni

Enhances conjugal transfer of the plasmid.Curated

GO - Biological processi

Keywordsi

Biological processConjugation

Names & Taxonomyi

Protein namesi
Recommended name:
Probable conjugal transfer protein TraB
Gene namesi
Name:traB
Ordered Locus Names:NGR_a04000
ORF Names:y4dQ
Encoded oniPlasmid sym pNGR234a0 Publication
OrganismiSinorhizobium fredii (strain NBRC 101917 / NGR234)
Taxonomic identifieri394 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
Proteomesi
  • UP000001054 Componenti: Plasmid sym pNGR234a

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei16 – 36HelicalSequence analysisAdd BLAST21
Transmembranei51 – 71HelicalSequence analysisAdd BLAST21
Transmembranei76 – 96HelicalSequence analysisAdd BLAST21
Transmembranei110 – 130HelicalSequence analysisAdd BLAST21
Transmembranei135 – 155HelicalSequence analysisAdd BLAST21
Transmembranei159 – 179HelicalSequence analysisAdd BLAST21
Transmembranei252 – 272HelicalSequence analysisAdd BLAST21
Transmembranei332 – 352HelicalSequence analysisAdd BLAST21

GO - Cellular componenti

Keywords - Cellular componenti

Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000655971 – 387Probable conjugal transfer protein TraBAdd BLAST387

Structurei

3D structure databases

ProteinModelPortaliP55416
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini187 – 387CN hydrolasePROSITE-ProRule annotationAdd BLAST201

Sequence similaritiesi

To A.tumefaciens Ti plasmid TraB.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

HOGENOMiHOG000296066
OMAiGITGWAH
OrthoDBiPOG091H2GGT

Family and domain databases

InterProiView protein in InterPro
IPR003010 C-N_Hydrolase
IPR036526 C-N_Hydrolase_sf
IPR016707 Conjugal_tfr_TraB_rhizob
PfamiView protein in Pfam
PF00795 CN_hydrolase, 1 hit
PIRSFiPIRSF017932 Conjugal_transfer_TraB_rhizob, 1 hit
SUPFAMiSSF56317 SSF56317, 1 hit
PROSITEiView protein in PROSITE
PS50263 CN_HYDROLASE, 1 hit

Sequencei

Sequence statusi: Complete.

P55416-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRRDHLQPRL LTIASIVVGT VGWSGYALLL PVALAFPILW SRARTRRVAA
60 70 80 90 100
LVSAGYFLAA SRGLPQGVAA FYTSDLWPGL LLWLCASGSF VVVHTVLWTK
110 120 130 140 150
RSDCRPFRYL LAAVLMAVPP MGITGWAHPV TAAGILFPGW GWWGLVATTA
160 170 180 190 200
GLMGLVTRMW PAVAIAFTGF WLWSAANWTE SKLPASWQGV DLKLGSTLGR
210 220 230 240 250
NTSIQRHRDL IATVKDRASG GVRNVVLPES ALGFWTPTFE RLWVKALQGT
260 270 280 290 300
EISVISGAAA IDATGYDNVL VTLSADGGRV LYRERMPVPG SMWQPWGSWL
310 320 330 340 350
GESDGARAHF FANPVVTVGN SRVAPLICYE QLVVWPTLQS MLYEPDLIVA
360 370 380
VGNGWWTKGT SIVAIQRVNA IAWAKLFAKP LVLSFNT
Length:387
Mass (Da):42,199
Last modified:November 1, 1997 - v1
Checksum:i0CBBF918150A2412
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00090 Genomic DNA Translation: AAB91646.1
RefSeqiNP_443826.1, NC_000914.2
WP_010875412.1, NC_000914.2

Genome annotation databases

EnsemblBacteriaiAAB91646; AAB91646; NGR_a04000
GeneIDi962597
KEGGirhi:NGR_a04000
PATRICifig|394.7.peg.421

Similar proteinsi

Entry informationi

Entry nameiTRAB_SINFN
AccessioniPrimary (citable) accession number: P55416
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: March 28, 2018
This is version 101 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Plasmid, Reference proteome
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Main funding by: National Institutes of Health