Skip Header

Contribute Send feedback
Read comments (?) or add your own

P55416 (TRAB_RHISN) Reviewed, UniProtKB/Swiss-Prot

Last modified May 29, 2013. Version 78. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Probable conjugal transfer protein TraB
Gene names
Name:traB
Ordered Locus Names:NGR_a04000
ORF Names:y4dQ
Encoded onPlasmid sym pNGR234a
OrganismRhizobium sp. (strain NGR234) [Complete proteome] [HAMAP]
Taxonomic identifier394 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Rhizobiaceae › Sinorhizobium/Ensifer group › Sinorhizobium ›

Protein attributes

Sequence length387 AA.
Sequence statusComplete.
Protein existencePredicted

General annotation (Comments)

Function

Enhances conjugal transfer of the plasmid Potential.

Subcellular location

Cell membrane; Multi-pass membrane protein Potential.

Sequence similarities

To A.tumefaciens Ti plasmid TraB.

Ontologies

Keywords
   Biological processConjugation
   Cellular componentCell membrane
Membrane
   DomainTransmembrane
Transmembrane helix
   Technical termComplete proteome
Plasmid
Gene Ontology (GO)
   Biological_processconjugation

Inferred from electronic annotation. Source: UniProtKB-KW

nitrogen compound metabolic process

Inferred from electronic annotation. Source: InterPro

   Cellular_componentintegral to membrane

Inferred from electronic annotation. Source: UniProtKB-KW

plasma membrane

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular_functionhydrolase activity, acting on carbon-nitrogen (but not peptide) bonds

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 387387Probable conjugal transfer protein TraB
PRO_0000065597

Regions

Transmembrane16 – 3621Helical; Potential
Transmembrane51 – 7121Helical; Potential
Transmembrane76 – 9621Helical; Potential
Transmembrane110 – 13021Helical; Potential
Transmembrane135 – 15521Helical; Potential
Transmembrane159 – 17921Helical; Potential
Transmembrane252 – 27221Helical; Potential
Transmembrane332 – 35221Helical; Potential

Sequences

Sequence LengthMass (Da)Tools
P55416 [UniParc].

Last modified November 1, 1997. Version 1.
Checksum: 0CBBF918150A2412

FASTA38742,199
        10         20         30         40         50         60 
MRRDHLQPRL LTIASIVVGT VGWSGYALLL PVALAFPILW SRARTRRVAA LVSAGYFLAA 

        70         80         90        100        110        120 
SRGLPQGVAA FYTSDLWPGL LLWLCASGSF VVVHTVLWTK RSDCRPFRYL LAAVLMAVPP 

       130        140        150        160        170        180 
MGITGWAHPV TAAGILFPGW GWWGLVATTA GLMGLVTRMW PAVAIAFTGF WLWSAANWTE 

       190        200        210        220        230        240 
SKLPASWQGV DLKLGSTLGR NTSIQRHRDL IATVKDRASG GVRNVVLPES ALGFWTPTFE 

       250        260        270        280        290        300 
RLWVKALQGT EISVISGAAA IDATGYDNVL VTLSADGGRV LYRERMPVPG SMWQPWGSWL 

       310        320        330        340        350        360 
GESDGARAHF FANPVVTVGN SRVAPLICYE QLVVWPTLQS MLYEPDLIVA VGNGWWTKGT 

       370        380 
SIVAIQRVNA IAWAKLFAKP LVLSFNT

« Hide

References

[1]"Molecular basis of symbiosis between Rhizobium and legumes."
Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X.
Nature 387:394-401(1997) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NGR234.
[2]"Rhizobium sp. strain NGR234 possesses a remarkable number of secretion systems."
Schmeisser C., Liesegang H., Krysciak D., Bakkou N., Le Quere A., Wollherr A., Heinemeyer I., Morgenstern B., Pommerening-Roeser A., Flores M., Palacios R., Brenner S., Gottschalk G., Schmitz R.A., Broughton W.J., Perret X., Strittmatter A.W., Streit W.R.
Appl. Environ. Microbiol. 75:4035-4045(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NGR234.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		U00090 Genomic DNA. Translation: AAB91646.1.
RefSeqNP_443826.1. NC_000914.2.

3D structure databases

ProteinModelPortalP55416.
ModBaseSearch...

Protein-protein interaction databases

STRING394.NGR_a04000.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAB91646; AAB91646; NGR_a04000.
GeneID962597.
KEGGrhi:NGR_a04000.
PATRIC32301571. VBIRhiSp122450_0421.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGNOG148692.
HOGENOMHOG000296066.
OMAGITGWAH.
ProtClustDBPRK13825.

Enzyme and pathway databases

BioCycSFRE394:GBYN-6451-MONOMER.

Family and domain databases

Gene3D3.60.110.10. 1 hit.
InterProIPR003010. C-N_Hydrolase.
IPR016707. Conjugal_tfr_TraB_rhizob.
[Graphical view]
PfamPF00795. CN_hydrolase. 1 hit.
[Graphical view]
PIRSFPIRSF017932. Conjugal_transfer_TraB_rhizob. 1 hit.
SUPFAMSSF56317. Ntlse/CNhydtse. 1 hit.
ProtoNetSearch...

Entry information

Entry nameTRAB_RHISN
AccessionPrimary (citable) accession number: P55416
Entry history
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: May 29, 2013
This is version 78 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

Rhizobium plasmid pNGR234a

Rhizobium plasmid pNGR234a: entries and gene names

to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·Documents