Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Basket 0
(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

P55416

- TRAB_RHISN

UniProt

P55416 - TRAB_RHISN

Protein

Probable conjugal transfer protein TraB

Gene

traB

Organism
Rhizobium sp. (strain NGR234)
Status
Reviewed - Annotation score: 2 out of 5- Protein predictedi
    • BLAST
    • Align
    • Format
    • Add to basket
    • History
      Entry version 84 (01 Oct 2014)
      Sequence version 1 (01 Nov 1997)
      Previous versions | rss
    • Help video
    • Feedback
    • Comment

    Functioni

    Enhances conjugal transfer of the plasmid.Curated

    GO - Molecular functioni

    1. hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds Source: InterPro

    GO - Biological processi

    1. conjugation Source: UniProtKB-KW
    2. nitrogen compound metabolic process Source: InterPro

    Keywords - Biological processi

    Conjugation

    Enzyme and pathway databases

    BioCyciRETL1328306-WGS:GSTH-6573-MONOMER.
    SFRE394:GBYN-6451-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Probable conjugal transfer protein TraB
    Gene namesi
    Name:traB
    Ordered Locus Names:NGR_a04000
    ORF Names:y4dQ
    Encoded oniPlasmid sym pNGR234a0 Publication
    OrganismiRhizobium sp. (strain NGR234)
    Taxonomic identifieri394 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
    ProteomesiUP000001054: Plasmid sym pNGR234a

    Subcellular locationi

    GO - Cellular componenti

    1. integral component of membrane Source: UniProtKB-KW
    2. plasma membrane Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    Cell membrane, Membrane

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 387387Probable conjugal transfer protein TraBPRO_0000065597Add
    BLAST

    Interactioni

    Protein-protein interaction databases

    STRINGi394.NGR_a04000.

    Structurei

    3D structure databases

    ProteinModelPortaliP55416.
    ModBaseiSearch...
    MobiDBiSearch...

    Transmembrane

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Transmembranei16 – 3621HelicalSequence AnalysisAdd
    BLAST
    Transmembranei51 – 7121HelicalSequence AnalysisAdd
    BLAST
    Transmembranei76 – 9621HelicalSequence AnalysisAdd
    BLAST
    Transmembranei110 – 13021HelicalSequence AnalysisAdd
    BLAST
    Transmembranei135 – 15521HelicalSequence AnalysisAdd
    BLAST
    Transmembranei159 – 17921HelicalSequence AnalysisAdd
    BLAST
    Transmembranei252 – 27221HelicalSequence AnalysisAdd
    BLAST
    Transmembranei332 – 35221HelicalSequence AnalysisAdd
    BLAST

    Family & Domainsi

    Sequence similaritiesi

    To A.tumefaciens Ti plasmid TraB.Curated

    Keywords - Domaini

    Transmembrane, Transmembrane helix

    Phylogenomic databases

    eggNOGiNOG148692.
    HOGENOMiHOG000296066.
    OMAiGITGWAH.
    OrthoDBiEOG6RZB9S.

    Family and domain databases

    Gene3Di3.60.110.10. 1 hit.
    InterProiIPR003010. C-N_Hydrolase.
    IPR016707. Conjugal_tfr_TraB_rhizob.
    [Graphical view]
    PfamiPF00795. CN_hydrolase. 1 hit.
    [Graphical view]
    PIRSFiPIRSF017932. Conjugal_transfer_TraB_rhizob. 1 hit.
    SUPFAMiSSF56317. SSF56317. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    P55416-1 [UniParc]FASTAAdd to Basket

    « Hide

    MRRDHLQPRL LTIASIVVGT VGWSGYALLL PVALAFPILW SRARTRRVAA    50
    LVSAGYFLAA SRGLPQGVAA FYTSDLWPGL LLWLCASGSF VVVHTVLWTK 100
    RSDCRPFRYL LAAVLMAVPP MGITGWAHPV TAAGILFPGW GWWGLVATTA 150
    GLMGLVTRMW PAVAIAFTGF WLWSAANWTE SKLPASWQGV DLKLGSTLGR 200
    NTSIQRHRDL IATVKDRASG GVRNVVLPES ALGFWTPTFE RLWVKALQGT 250
    EISVISGAAA IDATGYDNVL VTLSADGGRV LYRERMPVPG SMWQPWGSWL 300
    GESDGARAHF FANPVVTVGN SRVAPLICYE QLVVWPTLQS MLYEPDLIVA 350
    VGNGWWTKGT SIVAIQRVNA IAWAKLFAKP LVLSFNT 387
    Length:387
    Mass (Da):42,199
    Last modified:November 1, 1997 - v1
    Checksum:i0CBBF918150A2412
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    U00090 Genomic DNA. Translation: AAB91646.1.
    RefSeqiNP_443826.1. NC_000914.2.

    Genome annotation databases

    EnsemblBacteriaiAAB91646; AAB91646; NGR_a04000.
    GeneIDi962597.
    KEGGirhi:NGR_a04000.
    PATRICi32301571. VBIRhiSp122450_0421.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    U00090 Genomic DNA. Translation: AAB91646.1 .
    RefSeqi NP_443826.1. NC_000914.2.

    3D structure databases

    ProteinModelPortali P55416.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 394.NGR_a04000.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAB91646 ; AAB91646 ; NGR_a04000 .
    GeneIDi 962597.
    KEGGi rhi:NGR_a04000.
    PATRICi 32301571. VBIRhiSp122450_0421.

    Phylogenomic databases

    eggNOGi NOG148692.
    HOGENOMi HOG000296066.
    OMAi GITGWAH.
    OrthoDBi EOG6RZB9S.

    Enzyme and pathway databases

    BioCyci RETL1328306-WGS:GSTH-6573-MONOMER.
    SFRE394:GBYN-6451-MONOMER.

    Family and domain databases

    Gene3Di 3.60.110.10. 1 hit.
    InterProi IPR003010. C-N_Hydrolase.
    IPR016707. Conjugal_tfr_TraB_rhizob.
    [Graphical view ]
    Pfami PF00795. CN_hydrolase. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF017932. Conjugal_transfer_TraB_rhizob. 1 hit.
    SUPFAMi SSF56317. SSF56317. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Molecular basis of symbiosis between Rhizobium and legumes."
      Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X.
      Nature 387:394-401(1997) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: NGR234.
    2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: NGR234.

    Entry informationi

    Entry nameiTRAB_RHISN
    AccessioniPrimary (citable) accession number: P55416
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: November 1, 1997
    Last sequence update: November 1, 1997
    Last modified: October 1, 2014
    This is version 84 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Plasmid, Reference proteome

    Documents

    1. Rhizobium plasmid pNGR234a
      Rhizobium plasmid pNGR234a: entries and gene names

    External Data

    Dasty 3