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P55416

- TRAB_RHISN

UniProt

P55416 - TRAB_RHISN

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Protein

Probable conjugal transfer protein TraB

Gene

traB

Organism
Rhizobium sp. (strain NGR234)
Status
Reviewed - Annotation score: 2 out of 5- Protein predictedi

Functioni

Enhances conjugal transfer of the plasmid.Curated

GO - Molecular functioni

  1. hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds Source: InterPro

GO - Biological processi

  1. conjugation Source: UniProtKB-KW
  2. nitrogen compound metabolic process Source: InterPro
Complete GO annotation...

Keywords - Biological processi

Conjugation

Enzyme and pathway databases

BioCyciRETL1328306-WGS:GSTH-6573-MONOMER.
SFRE394:GBYN-6451-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Probable conjugal transfer protein TraB
Gene namesi
Name:traB
Ordered Locus Names:NGR_a04000
ORF Names:y4dQ
Encoded oniPlasmid sym pNGR234a0 Publication
OrganismiRhizobium sp. (strain NGR234)
Taxonomic identifieri394 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
ProteomesiUP000001054: Plasmid sym pNGR234a

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei16 – 3621HelicalSequence AnalysisAdd
BLAST
Transmembranei51 – 7121HelicalSequence AnalysisAdd
BLAST
Transmembranei76 – 9621HelicalSequence AnalysisAdd
BLAST
Transmembranei110 – 13021HelicalSequence AnalysisAdd
BLAST
Transmembranei135 – 15521HelicalSequence AnalysisAdd
BLAST
Transmembranei159 – 17921HelicalSequence AnalysisAdd
BLAST
Transmembranei252 – 27221HelicalSequence AnalysisAdd
BLAST
Transmembranei332 – 35221HelicalSequence AnalysisAdd
BLAST

GO - Cellular componenti

  1. integral component of membrane Source: UniProtKB-KW
  2. plasma membrane Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 387387Probable conjugal transfer protein TraBPRO_0000065597Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi394.NGR_a04000.

Structurei

3D structure databases

ProteinModelPortaliP55416.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

To A.tumefaciens Ti plasmid TraB.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiNOG148692.
HOGENOMiHOG000296066.
OMAiGITGWAH.
OrthoDBiEOG6RZB9S.

Family and domain databases

Gene3Di3.60.110.10. 1 hit.
InterProiIPR003010. C-N_Hydrolase.
IPR016707. Conjugal_tfr_TraB_rhizob.
[Graphical view]
PfamiPF00795. CN_hydrolase. 1 hit.
[Graphical view]
PIRSFiPIRSF017932. Conjugal_transfer_TraB_rhizob. 1 hit.
SUPFAMiSSF56317. SSF56317. 1 hit.

Sequencei

Sequence statusi: Complete.

P55416-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MRRDHLQPRL LTIASIVVGT VGWSGYALLL PVALAFPILW SRARTRRVAA
60 70 80 90 100
LVSAGYFLAA SRGLPQGVAA FYTSDLWPGL LLWLCASGSF VVVHTVLWTK
110 120 130 140 150
RSDCRPFRYL LAAVLMAVPP MGITGWAHPV TAAGILFPGW GWWGLVATTA
160 170 180 190 200
GLMGLVTRMW PAVAIAFTGF WLWSAANWTE SKLPASWQGV DLKLGSTLGR
210 220 230 240 250
NTSIQRHRDL IATVKDRASG GVRNVVLPES ALGFWTPTFE RLWVKALQGT
260 270 280 290 300
EISVISGAAA IDATGYDNVL VTLSADGGRV LYRERMPVPG SMWQPWGSWL
310 320 330 340 350
GESDGARAHF FANPVVTVGN SRVAPLICYE QLVVWPTLQS MLYEPDLIVA
360 370 380
VGNGWWTKGT SIVAIQRVNA IAWAKLFAKP LVLSFNT
Length:387
Mass (Da):42,199
Last modified:November 1, 1997 - v1
Checksum:i0CBBF918150A2412
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00090 Genomic DNA. Translation: AAB91646.1.
RefSeqiNP_443826.1. NC_000914.2.
WP_010875412.1. NC_000914.2.

Genome annotation databases

EnsemblBacteriaiAAB91646; AAB91646; NGR_a04000.
GeneIDi962597.
KEGGirhi:NGR_a04000.
PATRICi32301571. VBIRhiSp122450_0421.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00090 Genomic DNA. Translation: AAB91646.1 .
RefSeqi NP_443826.1. NC_000914.2.
WP_010875412.1. NC_000914.2.

3D structure databases

ProteinModelPortali P55416.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 394.NGR_a04000.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAB91646 ; AAB91646 ; NGR_a04000 .
GeneIDi 962597.
KEGGi rhi:NGR_a04000.
PATRICi 32301571. VBIRhiSp122450_0421.

Phylogenomic databases

eggNOGi NOG148692.
HOGENOMi HOG000296066.
OMAi GITGWAH.
OrthoDBi EOG6RZB9S.

Enzyme and pathway databases

BioCyci RETL1328306-WGS:GSTH-6573-MONOMER.
SFRE394:GBYN-6451-MONOMER.

Family and domain databases

Gene3Di 3.60.110.10. 1 hit.
InterProi IPR003010. C-N_Hydrolase.
IPR016707. Conjugal_tfr_TraB_rhizob.
[Graphical view ]
Pfami PF00795. CN_hydrolase. 1 hit.
[Graphical view ]
PIRSFi PIRSF017932. Conjugal_transfer_TraB_rhizob. 1 hit.
SUPFAMi SSF56317. SSF56317. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "Molecular basis of symbiosis between Rhizobium and legumes."
    Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X.
    Nature 387:394-401(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NGR234.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NGR234.

Entry informationi

Entry nameiTRAB_RHISN
AccessioniPrimary (citable) accession number: P55416
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: November 26, 2014
This is version 86 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Plasmid, Reference proteome

Documents

  1. Rhizobium plasmid pNGR234a
    Rhizobium plasmid pNGR234a: entries and gene names

External Data

Dasty 3