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Reviewed, UniProtKB/Swiss-Prot P55416 (TRAB_RHISN)

Last modified December 15, 2009. Version 56. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents

Names and origin

Protein namesRecommended name:
    Probable conjugal transfer protein traB
Gene names
Name: traB
Ordered Locus Names: NGR_a04000
ORF Names: y4dQ
Encoded onPlasmid sym pNGR234a
OrganismRhizobium sp. (strain NGR234) [Complete proteome] [HAMAP]
Taxonomic identifier394 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeRhizobium/Agrobacterium groupRhizobium

Protein attributes

Sequence length387 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is not processed.
Protein existencePredicted.

General annotation (Comments)

Function

Enhances conjugal transfer of the plasmid Potential.

Subcellular location

Cell membrane; Multi-pass membrane protein Potential.

Sequence similarities

To A.tumefaciens Ti plasmid traB.

Ontologies

Keywords
   Biological processConjugation
   Cellular componentCell membrane
Membrane
   DomainTransmembrane
   Technical termComplete proteome
Plasmid
Gene Ontology (GO)
   Biological processconjugation

Inferred from electronic annotation. Source: UniProtKB-KW

nitrogen compound metabolic process

Inferred from electronic annotation. Source: InterPro

   Cellular componentintegral to membrane

Inferred from electronic annotation. Source: UniProtKB-SubCell

plasma membrane

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular functionhydrolase activity, acting on carbon-nitrogen (but not peptide) bonds

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 387387Probable conjugal transfer protein traB
PRO_0000065597

Regions

Transmembrane16 – 3621 Potential
Transmembrane51 – 7121 Potential
Transmembrane76 – 9621 Potential
Transmembrane110 – 13021 Potential
Transmembrane135 – 15521 Potential
Transmembrane159 – 17921 Potential
Transmembrane252 – 27221 Potential
Transmembrane332 – 35221 Potential

Sequences

Sequence LengthMass (Da)Tools
P55416-1 [UniParc].

Last modified November 1, 1997. Version 1.
Checksum: 0CBBF918150A2412

FASTA38742,199
        10         20         30         40         50         60 
MRRDHLQPRL LTIASIVVGT VGWSGYALLL PVALAFPILW SRARTRRVAA LVSAGYFLAA 

        70         80         90        100        110        120 
SRGLPQGVAA FYTSDLWPGL LLWLCASGSF VVVHTVLWTK RSDCRPFRYL LAAVLMAVPP 

       130        140        150        160        170        180 
MGITGWAHPV TAAGILFPGW GWWGLVATTA GLMGLVTRMW PAVAIAFTGF WLWSAANWTE 

       190        200        210        220        230        240 
SKLPASWQGV DLKLGSTLGR NTSIQRHRDL IATVKDRASG GVRNVVLPES ALGFWTPTFE 

       250        260        270        280        290        300 
RLWVKALQGT EISVISGAAA IDATGYDNVL VTLSADGGRV LYRERMPVPG SMWQPWGSWL 

       310        320        330        340        350        360 
GESDGARAHF FANPVVTVGN SRVAPLICYE QLVVWPTLQS MLYEPDLIVA VGNGWWTKGT 

       370        380 
SIVAIQRVNA IAWAKLFAKP LVLSFNT 

« Hide

References

[1]"Molecular basis of symbiosis between Rhizobium and legumes."
Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X.
Nature 387:394-401(1997) [PubMed: 9163424] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
[2]"Rhizobium sp. strain NGR234 possesses a remarkable number of secretion systems."
Schmeisser C., Liesegang H., Krysciak D., Bakkou N., Le Quere A., Wollherr A., Heinemeyer I., Morgenstern B., Pommerening-Roeser A., Flores M., Palacios R., Brenner S., Gottschalk G., Schmitz R.A., Broughton W.J., Perret X., Strittmatter A.W., Streit W.R.
Appl. Environ. Microbiol. 75:4035-4045(2009) [PubMed: 19376903] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases

U00090 Genomic DNA. Translation: AAB91646.1.
RefSeqNP_443826.1.

3D structure databases

ModBaseSearch...

Genome annotation databases

GeneID962597.
GenomeReviewsGene locus NGR_a04000 in contig U00090_GR.
KEGGrhi:NGR_a04000.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHBG300445.

Family and domain databases

InterProIPR010804. Conjugal_tfr_TraB.
IPR016707. Conjugal_tfr_TraB_rhizob.
IPR003010. Ntlse/CNhydtse.
[Graphical view]
PfamPF07186. TraB_2. 1 hit.
[Graphical view]
PIRSFPIRSF017932. Conjugal_transfer_TraB_rhizob. 1 hit.
ProtoNetSearch...

Entry information

Entry nameTRAB_RHISN
AccessionPrimary (citable) accession number: P55416
Entry history
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: December 15, 2009
This is version 56 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation projectHAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)

Relevant documents

Rhizobium plasmid pNGR234a

Rhizobium plasmid pNGR234a: entries and gene names

Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents