P55411 (Y4DL_RHISN) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
Uncharacterized HTH-type transcriptional regulator y4dL

Gene names

Ordered Locus Names:	NGR_a04050
ORF Names:	y4dL

Encoded on

Plasmid sym pNGR234a

Organism

Rhizobium sp. (strain NGR234) [Complete proteome] [HAMAP]

Taxonomic identifier

394 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Rhizobiaceae › Sinorhizobium/Ensifer group › Sinorhizobium

Protein attributes

Sequence length	196 AA.
Sequence status	Complete.
Protein existence	Predicted

General annotation (Comments)

Sequence similarities

Contains 1 HTH cro/C1-type DNA-binding domain.

Ontologies

Keywords
Biological process	Transcription Transcription regulation
Ligand	DNA-binding
Technical term	Complete proteome Plasmid
Gene Ontology (GO)
Biological process	regulation of transcription, DNA-dependent Inferred from electronic annotation. Source: UniProtKB-KW transcription, DNA-dependent Inferred from electronic annotation. Source: UniProtKB-KW
Molecular function	sequence-specific DNA binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 196	196	Uncharacterized HTH-type transcriptional regulator y4dL		PRO_0000149777
Regions
	Domain	12 – 66	55	HTH cro/C1-type
	DNA binding	23 – 42	20	H-T-H motif Potential

Sequences

	Sequence		Length	Mass (Da)
	P55411 [UniParc]. Last modified November 1, 1997. Version 1. Checksum: 6EEFD3494107C2C6	FASTA	196	21,764
	10 20 30 40 50 60 MAYKTEHITQ QLRAAREAQK MSQRELSARS GLTQSHISQI ERGTMEPGLG SLVDVARALD 70 80 90 100 110 120 LEIVLAPKKL MPAIRNILDS ASASSDVLTS DQRKLVGRLE RWFAQHRGGF GSASEADTFK 130 140 150 160 170 180 DSLALLRHLP LSAEEMDTFN EATARLDRSQ ADPPSRQELS RIAHAVRHLR NAAVHRDRDD 190 AVPRSAYALD EEDDNA

References

[1]

"Molecular basis of symbiosis between Rhizobium and legumes." Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X. Nature 387:394-401(1997) [PubMed: 9163424] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: NGR234.

[2]

"Rhizobium sp. strain NGR234 possesses a remarkable number of secretion systems." Schmeisser C., Liesegang H., Krysciak D., Bakkou N., Le Quere A., Wollherr A., Heinemeyer I., Morgenstern B., Pommerening-Roeser A., Flores M., Palacios R., Brenner S., Gottschalk G., Schmitz R.A., Broughton W.J., Perret X., Strittmatter A.W., Streit W.R. Appl. Environ. Microbiol. 75:4035-4045(2009) [PubMed: 19376903] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: NGR234.

Cross-references

Sequence databases
EMBL GenBank DDBJ	U00090 Genomic DNA. Translation: AAB91641.1.
RefSeq	NP_443821.1. NC_000914.2.
3D structure databases
ProteinModelPortal	P55411.
ModBase	Search...
Protein-protein interaction databases
STRING	P55411.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	962180.
GenomeReviews	Gene locus NGR_a04050 in contig U00090_GR.
KEGG	rhi:NGR_a04050.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG655399.
OMA	DIQTINF.
ProtClustDB	CLSK516079.
Family and domain databases
InterPro	IPR001387. HTH_3. IPR010982. Lambda_DNA-bd. [Graphical view]
Gene3D	G3DSA:1.10.260.40. G3DSA:1.10.260.40. 1 hit.
Pfam	PF01381. HTH_3. 1 hit. [Graphical view]
SMART	SM00530. HTH_XRE. 1 hit. [Graphical view]
SUPFAM	SSF47413. Lambda_like_DNA. 1 hit.
PROSITE	PS50943. HTH_CROC1. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Y4DL_RHISN

Accession

Primary (citable) accession number: P55411

Entry history

Integrated into UniProtKB/Swiss-Prot:	November 1, 1997
Last sequence update:	November 1, 1997
Last modified:	September 21, 2011
This is version 54 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program