P55409 (Y4DJ_RHISN) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
Uncharacterized HTH-type transcriptional regulator y4dJ

Gene names

Ordered Locus Names:	NGR_a04070
ORF Names:	y4dJ

Encoded on

Plasmid sym pNGR234a

Organism

Rhizobium sp. (strain NGR234) [Complete proteome] [HAMAP]

Taxonomic identifier

394 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Rhizobiaceae › Sinorhizobium/Ensifer group › Sinorhizobium

Protein attributes

Sequence length	77 AA.
Sequence status	Complete.
Protein existence	Predicted

General annotation (Comments)

Sequence similarities

Contains 1 HTH cro/C1-type DNA-binding domain.

Ontologies

Keywords
Biological process	Transcription Transcription regulation
Ligand	DNA-binding
Technical term	Complete proteome Plasmid
Gene Ontology (GO)
Biological process	regulation of transcription, DNA-dependent Inferred from electronic annotation. Source: UniProtKB-KW transcription, DNA-dependent Inferred from electronic annotation. Source: UniProtKB-KW
Molecular function	sequence-specific DNA binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 77	77	Uncharacterized HTH-type transcriptional regulator y4dJ		PRO_0000149776
Regions
	Domain	11 – 65	55	HTH cro/C1-type
	DNA binding	22 – 41	20	H-T-H motif Potential

Sequences

	Sequence		Length	Mass (Da)
	P55409 [UniParc]. Last modified November 1, 1997. Version 1. Checksum: 9042ECAD643CD00D	FASTA	77	8,726
	10 20 30 40 50 60 MDMRKLVGSN FARLRREKGL TQEEVEARSG FSQQYLSSLE RGRRNPTVIT LYELAQALGV 70 SHVELVTPTD ETPFGTR

References

[1]

"Molecular basis of symbiosis between Rhizobium and legumes." Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X. Nature 387:394-401(1997) [PubMed: 9163424] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: NGR234.

[2]

"Rhizobium sp. strain NGR234 possesses a remarkable number of secretion systems." Schmeisser C., Liesegang H., Krysciak D., Bakkou N., Le Quere A., Wollherr A., Heinemeyer I., Morgenstern B., Pommerening-Roeser A., Flores M., Palacios R., Brenner S., Gottschalk G., Schmitz R.A., Broughton W.J., Perret X., Strittmatter A.W., Streit W.R. Appl. Environ. Microbiol. 75:4035-4045(2009) [PubMed: 19376903] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: NGR234.

Cross-references

Sequence databases
EMBL GenBank DDBJ	U00090 Genomic DNA. Translation: AAB91639.1.
RefSeq	NP_443819.1. NC_000914.2.
3D structure databases
ProteinModelPortal	P55409.
ModBase	Search...
Protein-protein interaction databases
STRING	P55409.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	962294.
GenomeReviews	Gene locus NGR_a04070 in contig U00090_GR.
KEGG	rhi:NGR_a04070.
PATRIC	32301585. VBIRhiSp122450_0428.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG727458.
OMA	HRSHMPE.
ProtClustDB	CLSK864382.
Family and domain databases
InterPro	IPR001387. HTH_3. IPR010982. Lambda_DNA-bd. [Graphical view]
Gene3D	G3DSA:1.10.260.40. G3DSA:1.10.260.40. 1 hit.
Pfam	PF01381. HTH_3. 1 hit. [Graphical view]
SMART	SM00530. HTH_XRE. 1 hit. [Graphical view]
SUPFAM	SSF47413. Lambda_like_DNA. 1 hit.
PROSITE	PS50943. HTH_CROC1. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Y4DJ_RHISN

Accession

Primary (citable) accession number: P55409

Entry history

Integrated into UniProtKB/Swiss-Prot:	November 1, 1997
Last sequence update:	November 1, 1997
Last modified:	January 25, 2012
This is version 55 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program