P55409 (Y4DJ_RHISN) Reviewed, UniProtKB/Swiss-Prot
Last modified
January 25, 2012.
Version 55.
History...
Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Uncharacterized HTH-type transcriptional regulator y4dJ | ||||
| Gene names |
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| Encoded on | Plasmid sym pNGR234a | ||||
| Organism | Rhizobium sp. (strain NGR234) [Complete proteome] [HAMAP] | ||||
| Taxonomic identifier | 394 [NCBI] | ||||
| Taxonomic lineage | Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Rhizobiaceae › Sinorhizobium/Ensifer group › Sinorhizobium |
Protein attributes
| Sequence length | 77 AA. |
| Sequence status | Complete. |
| Protein existence | Predicted |
General annotation (Comments)
| Sequence similarities | Contains 1 HTH cro/C1-type DNA-binding domain. |
Ontologies
| Keywords | |
|---|---|
| Biological process | Transcription Transcription regulation |
| Ligand | DNA-binding |
| Technical term | Complete proteome Plasmid |
| Gene Ontology (GO) | |
| Biological process | regulation of transcription, DNA-dependent Inferred from electronic annotation. Source: UniProtKB-KW transcription, DNA-dependentInferred from electronic annotation. Source: UniProtKB-KW |
| Molecular function | sequence-specific DNA binding Inferred from electronic annotation. Source: InterPro |
| Complete GO annotation... | |
Sequence annotation (Features)
Sequences
References
| [1] | "Molecular basis of symbiosis between Rhizobium and legumes." Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X. Nature 387:394-401(1997) [PubMed: 9163424] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: NGR234. |
| [2] | "Rhizobium sp. strain NGR234 possesses a remarkable number of secretion systems." Schmeisser C., Liesegang H., Krysciak D., Bakkou N., Le Quere A., Wollherr A., Heinemeyer I., Morgenstern B., Pommerening-Roeser A., Flores M., Palacios R., Brenner S., Gottschalk G., Schmitz R.A., Broughton W.J., Perret X., Strittmatter A.W., Streit W.R. Appl. Environ. Microbiol. 75:4035-4045(2009) [PubMed: 19376903] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: NGR234. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | U00090 Genomic DNA. Translation: AAB91639.1. |
| RefSeq | NP_443819.1. NC_000914.2. |
3D structure databases | |
| ProteinModelPortal | P55409. |
| ModBase | Search... |
Protein-protein interaction databases | |
| STRING | P55409. |
Protocols and materials databases | |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| GeneID | 962294. |
| GenomeReviews | Gene locus NGR_a04070 in contig U00090_GR. |
| KEGG | rhi:NGR_a04070. |
| PATRIC | 32301585. VBIRhiSp122450_0428. |
Organism-specific databases | |
| CMR | Search... |
Phylogenomic databases | |
| HOGENOM | HBG727458. |
| OMA | HRSHMPE. |
| ProtClustDB | CLSK864382. |
Family and domain databases | |
| InterPro | IPR001387. HTH_3. IPR010982. Lambda_DNA-bd. [Graphical view] |
| Gene3D | G3DSA:1.10.260.40. G3DSA:1.10.260.40. 1 hit. |
| Pfam | PF01381. HTH_3. 1 hit. [Graphical view] |
| SMART | SM00530. HTH_XRE. 1 hit. [Graphical view] |
| SUPFAM | SSF47413. Lambda_like_DNA. 1 hit. |
| PROSITE | PS50943. HTH_CROC1. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Entry information
| Entry name | Y4DJ_RHISN | ||||||||
| Accession | Primary (citable) accession number: P55409 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Prokaryotic Protein Annotation Program | ||||||||
Relevant documents
| Rhizobium plasmid pNGR234a Rhizobium plasmid pNGR234a: entries and gene names |
| SIMILARITY comments Index of protein domains and families |

Clusters with