Reviewed, UniProtKB/Swiss-Prot P55408 (TRAM_RHISN)

Names and origin

Protein names

Recommended name:
    Probable transcriptional repressor traM

Gene names

Name:	traM
Ordered Locus Names:	NGR_a04080
ORF Names:	y4dI

Encoded on

Plasmid sym pNGR234a

Organism

Rhizobium sp. (strain NGR234) [Complete proteome] [HAMAP]

Taxonomic identifier

394 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Rhizobiaceae › Rhizobium/Agrobacterium group › Rhizobium

Protein attributes

Sequence length	107 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Evidence at protein level.

General annotation (Comments)

Function	Acts to antagonize traR-dependent activation Potential.
Sequence similarities	To A.tumefaciens Ti plasmid traM.

Ontologies

Keywords
Biological process	Transcription Transcription regulation
Molecular function	Repressor
Technical term	3D-structure Complete proteome Plasmid
Gene Ontology (GO)
Biological process	regulation of transcription Inferred from electronic annotation. Source: UniProtKB-KW transcription Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Molecule processing

Chain

1 – 107

107

Probable transcriptional repressor traM

PRO_0000065608

Secondary structure

1

.

.

.

.

.

.

.

107

Helix Strand Turn

Details...

Turn

19 – 22

4

Helix

25 – 56

32

Helix

66 – 94

29

Sequences

	Sequence		Length	Mass (Da)
	P55408-1 [UniParc]. Last modified November 1, 1997. Version 1. Checksum: B206500CE638ECAB	FASTA	107	12,203
	10 20 30 40 50 60 MNDMGSSEVN DENKEKEARY SVMTKSELEA LAVSAIREHR RLLWADQAVY EEWLRASDDP 70 80 90 100 SISGPVLQTL QDEYVARQKR SEAQQEELSD ILDALGFVPD VPFDDDN

References

[1]	"Molecular basis of symbiosis between Rhizobium and legumes." Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X. Nature 387:394-401(1997) [PubMed: 9163424] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
[2]	"Rhizobium sp. strain NGR234 possesses a remarkable number of secretion systems." Schmeisser C., Liesegang H., Krysciak D., Bakkou N., Le Quere A., Wollherr A., Heinemeyer I., Morgenstern B., Pommerening-Roeser A., Flores M., Palacios R., Brenner S., Gottschalk G., Schmitz R.A., Broughton W.J., Perret X., Strittmatter A.W., Streit W.R. Appl. Environ. Microbiol. 75:4035-4045(2009) [PubMed: 19376903] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
+	Additional computationally mapped references.

Cross-references

Sequence databases

EMBLGenBankDDBJ

U00090 Genomic DNA. Translation: AAB91638.1.

RefSeq

NP_443818.1.

3D structure databases

PDBPDBe

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
2Q0O	X-ray	2.00	C/D	1-107	[»]

ModBase

Search...

Protein-protein interaction databases

DIP

DIP-46220N.

Genome annotation databases

GeneID

962274.

GenomeReviews

Gene locus NGR_a04080 in contig U00090_GR.

KEGG

rhi:NGR_a04080.

Organism-specific databases

CMR

Search...

Phylogenomic databases

HOGENOM

HBG655981.

Family and domain databases

ProtoNet

Search...

Entry information

Entry name

TRAM_RHISN

Accession

Primary (citable) accession number: P55408

Entry history

Integrated into UniProtKB/Swiss-Prot:	November 1, 1997
Last sequence update:	November 1, 1997
Last modified:	December 15, 2009
This is version 32 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)