Probable transcriptional repressor traM - Rhizobium sp. (strain NGR234)

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P55408 (TRAM_RHISN) Reviewed, UniProtKB/Swiss-Prot

Last modified January 25, 2012. Version 46. History...

Clusters with 100%, 90%, 50% identity |

Documents (2) |

Third-party data

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Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·Documents Customize order

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Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·Documents Customize order

Names and origin

Protein names

Recommended name:
Probable transcriptional repressor traM

Gene names

Name:	traM
Ordered Locus Names:	NGR_a04080
ORF Names:	y4dI

Encoded on

Plasmid sym pNGR234a

Organism

Rhizobium sp. (strain NGR234) [Complete proteome] [HAMAP]

Taxonomic identifier

Taxonomic lineage

Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Rhizobiaceae › Sinorhizobium/Ensifer group › Sinorhizobium

Protein attributes

Sequence length	107 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

General annotation (Comments)

Function	Acts to antagonize traR-dependent activation Potential.
Sequence similarities	To A.tumefaciens Ti plasmid traM.

Ontologies

Keywords
Biological process	Transcription Transcription regulation
Molecular function	Repressor
Technical term	3D-structure Complete proteome Plasmid
Gene Ontology (GO)
Biological process	negative regulation of transcription, DNA-dependent Inferred from electronic annotation. Source: InterPro transcription, DNA-dependent Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Molecule processing

Chain

107

Probable transcriptional repressor traM

PRO_0000065608

Secondary structure

1

.

.

.

.

.

.

.

107

Helix Strand Turn

Sequences

Sequence

Length

Mass (Da)

Tools

P55408 [UniParc].

Last modified November 1, 1997. Version 1.
Checksum: B206500CE638ECAB
Show »

107

12,203

        10         20         30         40         50         60 
MNDMGSSEVN DENKEKEARY SVMTKSELEA LAVSAIREHR RLLWADQAVY EEWLRASDDP 

        70         80         90        100 
SISGPVLQTL QDEYVARQKR SEAQQEELSD ILDALGFVPD VPFDDDN

References

[1]	"Molecular basis of symbiosis between Rhizobium and legumes." Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X. Nature 387:394-401(1997) [PubMed: 9163424] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: NGR234.
[2]	"Rhizobium sp. strain NGR234 possesses a remarkable number of secretion systems." Schmeisser C., Liesegang H., Krysciak D., Bakkou N., Le Quere A., Wollherr A., Heinemeyer I., Morgenstern B., Pommerening-Roeser A., Flores M., Palacios R., Brenner S., Gottschalk G., Schmitz R.A., Broughton W.J., Perret X., Strittmatter A.W., Streit W.R. Appl. Environ. Microbiol. 75:4035-4045(2009) [PubMed: 19376903] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: NGR234.
+	Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

U00090 Genomic DNA. Translation: AAB91638.1.

RefSeq

NP_443818.1. NC_000914.2.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
2Q0O	X-ray	2.00	C/D	1-107	[»]

ProteinModelPortal

SMR

P55408. Positions 17-103.

ModBase

Protein-protein interaction databases

DIP

STRING

Protocols and materials databases

StructuralBiologyKnowledgebase

Genome annotation databases

GeneID

GenomeReviews

Gene locus NGR_a04080 in contig U00090_GR.

KEGG

rhi:NGR_a04080.

PATRIC

32301587. VBIRhiSp122450_0429.

Organism-specific databases

CMR

Phylogenomic databases

HOGENOM

OMA

ProtClustDB

Family and domain databases

InterPro

IPR015309. Tscrpt_rep_TraM.
[Graphical view]

Pfam

PF09228. Prok-TraM. 1 hit.
[Graphical view]

ProtoNet

Entry information

Entry name

TRAM_RHISN

Accession

Primary (citable) accession number: P55408

Entry history

Integrated into UniProtKB/Swiss-Prot:	November 1, 1997
Last sequence update:	November 1, 1997
Last modified:	January 25, 2012
This is version 46 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program

Relevant documents

Rhizobium plasmid pNGR234a

Rhizobium plasmid pNGR234a: entries and gene names

PDB cross-references

Index of Protein Data Bank (PDB) cross-references

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Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·Documents