Skip Header

You are using a version of Internet Explorer that may not display all features of this website. Please upgrade to a modern browser.
Contribute Send feedback
Read comments (?) or add your own

P55406 (TRBI_RHISN) Reviewed, UniProtKB/Swiss-Prot

Last modified February 19, 2014. Version 62. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Probable conjugal transfer protein TrbI
Gene names
Name:trbI
Ordered Locus Names:NGR_a04100
ORF Names:y4dG
Encoded onPlasmid sym pNGR234a
OrganismRhizobium sp. (strain NGR234) [Complete proteome] [HAMAP]
Taxonomic identifier394 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium

Protein attributes

Sequence length431 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Subcellular location

Membrane; Single-pass membrane protein Potential.

Sequence similarities

Belongs to the TrbI/VirB10 family.

Ontologies

Keywords
   Biological processConjugation
   Cellular componentMembrane
   DomainTransmembrane
Transmembrane helix
   Technical termComplete proteome
Plasmid
Gene Ontology (GO)
   Biological_processconjugation

Inferred from electronic annotation. Source: UniProtKB-KW

   Cellular_componentintegral component of membrane

Inferred from electronic annotation. Source: UniProtKB-KW

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 431431Probable conjugal transfer protein TrbI
PRO_0000065618

Regions

Transmembrane27 – 4721Helical; Potential

Sequences

Sequence LengthMass (Da)Tools
P55406 [UniParc].

Last modified November 1, 1997. Version 1.
Checksum: 062E4462D67FDCA6

FASTA43147,769
        10         20         30         40         50         60 
MVQSLRLGAA NEAEDQNGMR RLNRLPIIVA IVIVALFVGF VVIGLAWRGL PFNRNNDIHS 

        70         80         90        100        110        120 
ASNTPATNFG DQLKRGVTDG IIGEPVKREA FQPTPTMKQK VDKEPTVVDR PTEPEERRPR 

       130        140        150        160        170        180 
LETEEEWKAR LMREQDEQII REAQRQRMAR LQARATALDS PLKVDISEGE KAPKNSTDTG 

       190        200        210        220        230        240 
QNPTATENNA SDLYPAAMKS GIMGENLDPN AQASKEDFFN QDIKDDGYLP NRVVPQMSVY 

       250        260        270        280        290        300 
ELKRGSVIPA TLITGLNSDL PGRITAQVSQ NVYDSATGYR LLIPQGAKLF GRYDSKVSFG 

       310        320        330        340        350        360 
QERVLVVWTD LIFPNGSTLQ IGGMAGTDAE GYGGFKDRVD RHLWRTWSSA ALIALIGTGI 

       370        380        390        400        410        420 
DMSMPESSTL ATQDTASDAV RRNFAESFGR VAEQTISKNL NVQPTIRIRP GYKFNVLVDQ 

       430 
DIIFPSAYRD N 

« Hide

References

[1]"Molecular basis of symbiosis between Rhizobium and legumes."
Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X.
Nature 387:394-401(1997) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NGR234.
[2]"Rhizobium sp. strain NGR234 possesses a remarkable number of secretion systems."
Schmeisser C., Liesegang H., Krysciak D., Bakkou N., Le Quere A., Wollherr A., Heinemeyer I., Morgenstern B., Pommerening-Roeser A., Flores M., Palacios R., Brenner S., Gottschalk G., Schmitz R.A., Broughton W.J., Perret X., Strittmatter A.W., Streit W.R.
Appl. Environ. Microbiol. 75:4035-4045(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NGR234.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
U00090 Genomic DNA. Translation: AAB92439.1.
RefSeqNP_443816.1. NC_000914.2.

3D structure databases

ProteinModelPortalP55406.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING394.NGR_a04100.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAB92439; AAB92439; NGR_a04100.
GeneID962289.
KEGGrhi:NGR_a04100.
PATRIC32301591. VBIRhiSp122450_0431.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG2948.
HOGENOMHOG000289491.
KOK03195.
OMADQDIVFP.
OrthoDBEOG6VHZ7H.
ProtClustDBPRK13831.

Enzyme and pathway databases

BioCycSFRE394:GBYN-6461-MONOMER.

Family and domain databases

InterProIPR005498. T4SS_VirB10/TraB/TrbI.
[Graphical view]
PfamPF03743. TrbI. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameTRBI_RHISN
AccessionPrimary (citable) accession number: P55406
Entry history
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: February 19, 2014
This is version 62 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Rhizobium plasmid pNGR234a

Rhizobium plasmid pNGR234a: entries and gene names