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Protein

Probable conjugal transfer protein TrbI

Gene

trbI

Organism
Rhizobium sp. (strain NGR234)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Conjugation

Enzyme and pathway databases

BioCyciSFRE394:GBYN-6461-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Probable conjugal transfer protein TrbI
Gene namesi
Name:trbI
Ordered Locus Names:NGR_a04100
ORF Names:y4dG
Encoded oniPlasmid sym pNGR234a0 Publication
OrganismiRhizobium sp. (strain NGR234)
Taxonomic identifieri394 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
ProteomesiUP000001054 Componenti: Plasmid sym pNGR234a

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei27 – 4721HelicalSequence AnalysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 431431Probable conjugal transfer protein TrbIPRO_0000065618Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi394.NGR_a04100.

Structurei

3D structure databases

ProteinModelPortaliP55406.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the TrbI/VirB10 family.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiCOG2948.
HOGENOMiHOG000289491.
KOiK03195.
OMAiDQDIVFP.
OrthoDBiEOG6VHZ7H.

Family and domain databases

InterProiIPR005498. T4SS_VirB10/TraB/TrbI.
[Graphical view]
PfamiPF03743. TrbI. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P55406-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVQSLRLGAA NEAEDQNGMR RLNRLPIIVA IVIVALFVGF VVIGLAWRGL
60 70 80 90 100
PFNRNNDIHS ASNTPATNFG DQLKRGVTDG IIGEPVKREA FQPTPTMKQK
110 120 130 140 150
VDKEPTVVDR PTEPEERRPR LETEEEWKAR LMREQDEQII REAQRQRMAR
160 170 180 190 200
LQARATALDS PLKVDISEGE KAPKNSTDTG QNPTATENNA SDLYPAAMKS
210 220 230 240 250
GIMGENLDPN AQASKEDFFN QDIKDDGYLP NRVVPQMSVY ELKRGSVIPA
260 270 280 290 300
TLITGLNSDL PGRITAQVSQ NVYDSATGYR LLIPQGAKLF GRYDSKVSFG
310 320 330 340 350
QERVLVVWTD LIFPNGSTLQ IGGMAGTDAE GYGGFKDRVD RHLWRTWSSA
360 370 380 390 400
ALIALIGTGI DMSMPESSTL ATQDTASDAV RRNFAESFGR VAEQTISKNL
410 420 430
NVQPTIRIRP GYKFNVLVDQ DIIFPSAYRD N
Length:431
Mass (Da):47,769
Last modified:November 1, 1997 - v1
Checksum:i062E4462D67FDCA6
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00090 Genomic DNA. Translation: AAB92439.1.
RefSeqiNP_443816.1. NC_000914.2.
WP_010875420.1. NC_000914.2.

Genome annotation databases

EnsemblBacteriaiAAB92439; AAB92439; NGR_a04100.
GeneIDi962289.
KEGGirhi:NGR_a04100.
PATRICi32301591. VBIRhiSp122450_0431.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00090 Genomic DNA. Translation: AAB92439.1.
RefSeqiNP_443816.1. NC_000914.2.
WP_010875420.1. NC_000914.2.

3D structure databases

ProteinModelPortaliP55406.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi394.NGR_a04100.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAB92439; AAB92439; NGR_a04100.
GeneIDi962289.
KEGGirhi:NGR_a04100.
PATRICi32301591. VBIRhiSp122450_0431.

Phylogenomic databases

eggNOGiCOG2948.
HOGENOMiHOG000289491.
KOiK03195.
OMAiDQDIVFP.
OrthoDBiEOG6VHZ7H.

Enzyme and pathway databases

BioCyciSFRE394:GBYN-6461-MONOMER.

Family and domain databases

InterProiIPR005498. T4SS_VirB10/TraB/TrbI.
[Graphical view]
PfamiPF03743. TrbI. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Molecular basis of symbiosis between Rhizobium and legumes."
    Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X.
    Nature 387:394-401(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NGR234.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NGR234.

Entry informationi

Entry nameiTRBI_RHISN
AccessioniPrimary (citable) accession number: P55406
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: May 27, 2015
This is version 69 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Plasmid, Reference proteome

Documents

  1. Rhizobium plasmid pNGR234a
    Rhizobium plasmid pNGR234a: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.