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P55403

- TRBF_RHISN

UniProt

P55403 - TRBF_RHISN

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Protein

Probable conjugal transfer protein TrbF

Gene

trbF

Organism
Rhizobium sp. (strain NGR234)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

GO - Biological processi

  1. conjugation Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

Conjugation

Enzyme and pathway databases

BioCyciSFRE394:GBYN-6464-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Probable conjugal transfer protein TrbF
Gene namesi
Name:trbF
Ordered Locus Names:NGR_a04130
ORF Names:y4dD
Encoded oniPlasmid sym pNGR234a0 Publication
OrganismiRhizobium sp. (strain NGR234)
Taxonomic identifieri394 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
ProteomesiUP000001054: Plasmid sym pNGR234a

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei35 – 5521HelicalSequence AnalysisAdd
BLAST

GO - Cellular componenti

  1. integral component of membrane Source: UniProtKB-KW
  2. plasma membrane Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 220220Probable conjugal transfer protein TrbFPRO_0000065616Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi394.NGR_a04130.

Structurei

3D structure databases

ProteinModelPortaliP55403.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the TrbF family.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiCOG3701.
HOGENOMiHOG000289469.
KOiK03200.
OMAiNSPFEKA.
OrthoDBiEOG60PH97.

Family and domain databases

InterProiIPR007430. VirB8.
[Graphical view]
PfamiPF04335. VirB8. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P55403-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MAANRAPENP YLAARQEWTE RYGSYVRAAA AWRTVGILGL AMAVIGFGYA
60 70 80 90 100
MYLSTEVKLV PYIVQVDKLG TSVTTGFPEQ IEYADVRVVR ATLGNFVTSF
110 120 130 140 150
RSITPDAAVQ KQYIDRTYVL LRTSDPSTEK INAWFRGNSP FEKAKTATVA
160 170 180 190 200
IEVNNIVALS NQTYQIDWTE YERDRKGKEI GTRRFRGIAT VTLTAPQDEA
210 220
TIRLNPIGLY VRDFDWTAQL
Length:220
Mass (Da):24,777
Last modified:November 1, 1997 - v1
Checksum:i735644064DFB218B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00090 Genomic DNA. Translation: AAB92436.1.
RefSeqiNP_443813.1. NC_000914.2.
WP_010875423.1. NC_000914.2.

Genome annotation databases

EnsemblBacteriaiAAB92436; AAB92436; NGR_a04130.
GeneIDi962590.
KEGGirhi:NGR_a04130.
PATRICi32301597. VBIRhiSp122450_0434.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00090 Genomic DNA. Translation: AAB92436.1 .
RefSeqi NP_443813.1. NC_000914.2.
WP_010875423.1. NC_000914.2.

3D structure databases

ProteinModelPortali P55403.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 394.NGR_a04130.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAB92436 ; AAB92436 ; NGR_a04130 .
GeneIDi 962590.
KEGGi rhi:NGR_a04130.
PATRICi 32301597. VBIRhiSp122450_0434.

Phylogenomic databases

eggNOGi COG3701.
HOGENOMi HOG000289469.
KOi K03200.
OMAi NSPFEKA.
OrthoDBi EOG60PH97.

Enzyme and pathway databases

BioCyci SFRE394:GBYN-6464-MONOMER.

Family and domain databases

InterProi IPR007430. VirB8.
[Graphical view ]
Pfami PF04335. VirB8. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Molecular basis of symbiosis between Rhizobium and legumes."
    Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X.
    Nature 387:394-401(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NGR234.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NGR234.

Entry informationi

Entry nameiTRBF_RHISN
AccessioniPrimary (citable) accession number: P55403
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: November 26, 2014
This is version 65 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Plasmid, Reference proteome

Documents

  1. Rhizobium plasmid pNGR234a
    Rhizobium plasmid pNGR234a: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3