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P55403

- TRBF_RHISN

UniProt

P55403 - TRBF_RHISN

Protein

Probable conjugal transfer protein TrbF

Gene

trbF

Organism
Rhizobium sp. (strain NGR234)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 63 (01 Oct 2014)
      Sequence version 1 (01 Nov 1997)
      Previous versions | rss
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    Functioni

    GO - Biological processi

    1. conjugation Source: UniProtKB-KW

    Keywords - Biological processi

    Conjugation

    Enzyme and pathway databases

    BioCyciSFRE394:GBYN-6464-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Probable conjugal transfer protein TrbF
    Gene namesi
    Name:trbF
    Ordered Locus Names:NGR_a04130
    ORF Names:y4dD
    Encoded oniPlasmid sym pNGR234a0 Publication
    OrganismiRhizobium sp. (strain NGR234)
    Taxonomic identifieri394 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
    ProteomesiUP000001054: Plasmid sym pNGR234a

    Subcellular locationi

    GO - Cellular componenti

    1. integral component of membrane Source: UniProtKB-KW
    2. plasma membrane Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    Cell membrane, Membrane

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 220220Probable conjugal transfer protein TrbFPRO_0000065616Add
    BLAST

    Interactioni

    Protein-protein interaction databases

    STRINGi394.NGR_a04130.

    Structurei

    3D structure databases

    ProteinModelPortaliP55403.
    ModBaseiSearch...
    MobiDBiSearch...

    Transmembrane

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Transmembranei35 – 5521HelicalSequence AnalysisAdd
    BLAST

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the TrbF family.Curated

    Keywords - Domaini

    Transmembrane, Transmembrane helix

    Phylogenomic databases

    eggNOGiCOG3701.
    HOGENOMiHOG000289469.
    KOiK03200.
    OMAiNSPFEKA.
    OrthoDBiEOG60PH97.

    Family and domain databases

    InterProiIPR007430. VirB8.
    [Graphical view]
    PfamiPF04335. VirB8. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    P55403-1 [UniParc]FASTAAdd to Basket

    « Hide

    MAANRAPENP YLAARQEWTE RYGSYVRAAA AWRTVGILGL AMAVIGFGYA    50
    MYLSTEVKLV PYIVQVDKLG TSVTTGFPEQ IEYADVRVVR ATLGNFVTSF 100
    RSITPDAAVQ KQYIDRTYVL LRTSDPSTEK INAWFRGNSP FEKAKTATVA 150
    IEVNNIVALS NQTYQIDWTE YERDRKGKEI GTRRFRGIAT VTLTAPQDEA 200
    TIRLNPIGLY VRDFDWTAQL 220
    Length:220
    Mass (Da):24,777
    Last modified:November 1, 1997 - v1
    Checksum:i735644064DFB218B
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    U00090 Genomic DNA. Translation: AAB92436.1.
    RefSeqiNP_443813.1. NC_000914.2.

    Genome annotation databases

    EnsemblBacteriaiAAB92436; AAB92436; NGR_a04130.
    GeneIDi962590.
    KEGGirhi:NGR_a04130.
    PATRICi32301597. VBIRhiSp122450_0434.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    U00090 Genomic DNA. Translation: AAB92436.1 .
    RefSeqi NP_443813.1. NC_000914.2.

    3D structure databases

    ProteinModelPortali P55403.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 394.NGR_a04130.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAB92436 ; AAB92436 ; NGR_a04130 .
    GeneIDi 962590.
    KEGGi rhi:NGR_a04130.
    PATRICi 32301597. VBIRhiSp122450_0434.

    Phylogenomic databases

    eggNOGi COG3701.
    HOGENOMi HOG000289469.
    KOi K03200.
    OMAi NSPFEKA.
    OrthoDBi EOG60PH97.

    Enzyme and pathway databases

    BioCyci SFRE394:GBYN-6464-MONOMER.

    Family and domain databases

    InterProi IPR007430. VirB8.
    [Graphical view ]
    Pfami PF04335. VirB8. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Molecular basis of symbiosis between Rhizobium and legumes."
      Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X.
      Nature 387:394-401(1997) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: NGR234.
    2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: NGR234.

    Entry informationi

    Entry nameiTRBF_RHISN
    AccessioniPrimary (citable) accession number: P55403
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: November 1, 1997
    Last sequence update: November 1, 1997
    Last modified: October 1, 2014
    This is version 63 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Plasmid, Reference proteome

    Documents

    1. Rhizobium plasmid pNGR234a
      Rhizobium plasmid pNGR234a: entries and gene names
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3