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P55403 (TRBF_RHISN) Reviewed, UniProtKB/Swiss-Prot

Last modified May 14, 2014. Version 62. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Probable conjugal transfer protein TrbF
Gene names
Name:trbF
Ordered Locus Names:NGR_a04130
ORF Names:y4dD
Encoded onPlasmid sym pNGR234a
OrganismRhizobium sp. (strain NGR234) [Complete proteome] [HAMAP]
Taxonomic identifier394 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium

Protein attributes

Sequence length220 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Subcellular location

Cell membrane; Single-pass membrane protein Potential.

Sequence similarities

Belongs to the TrbF family.

Ontologies

Keywords
   Biological processConjugation
   Cellular componentCell membrane
Membrane
   DomainTransmembrane
Transmembrane helix
   Technical termComplete proteome
Plasmid
Gene Ontology (GO)
   Biological_processconjugation

Inferred from electronic annotation. Source: UniProtKB-KW

   Cellular_componentintegral component of membrane

Inferred from electronic annotation. Source: UniProtKB-KW

plasma membrane

Inferred from electronic annotation. Source: UniProtKB-SubCell

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 220220Probable conjugal transfer protein TrbF
PRO_0000065616

Regions

Transmembrane35 – 5521Helical; Potential

Sequences

Sequence LengthMass (Da)Tools
P55403 [UniParc].

Last modified November 1, 1997. Version 1.
Checksum: 735644064DFB218B

FASTA22024,777
        10         20         30         40         50         60 
MAANRAPENP YLAARQEWTE RYGSYVRAAA AWRTVGILGL AMAVIGFGYA MYLSTEVKLV 

        70         80         90        100        110        120 
PYIVQVDKLG TSVTTGFPEQ IEYADVRVVR ATLGNFVTSF RSITPDAAVQ KQYIDRTYVL 

       130        140        150        160        170        180 
LRTSDPSTEK INAWFRGNSP FEKAKTATVA IEVNNIVALS NQTYQIDWTE YERDRKGKEI 

       190        200        210        220 
GTRRFRGIAT VTLTAPQDEA TIRLNPIGLY VRDFDWTAQL 

« Hide

References

[1]"Molecular basis of symbiosis between Rhizobium and legumes."
Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X.
Nature 387:394-401(1997) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NGR234.
[2]"Rhizobium sp. strain NGR234 possesses a remarkable number of secretion systems."
Schmeisser C., Liesegang H., Krysciak D., Bakkou N., Le Quere A., Wollherr A., Heinemeyer I., Morgenstern B., Pommerening-Roeser A., Flores M., Palacios R., Brenner S., Gottschalk G., Schmitz R.A., Broughton W.J., Perret X., Strittmatter A.W., Streit W.R.
Appl. Environ. Microbiol. 75:4035-4045(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NGR234.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
U00090 Genomic DNA. Translation: AAB92436.1.
RefSeqNP_443813.1. NC_000914.2.

3D structure databases

ProteinModelPortalP55403.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING394.NGR_a04130.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAB92436; AAB92436; NGR_a04130.
GeneID962590.
KEGGrhi:NGR_a04130.
PATRIC32301597. VBIRhiSp122450_0434.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG3701.
HOGENOMHOG000289469.
KOK03200.
OMANSPFEKA.
OrthoDBEOG60PH97.

Enzyme and pathway databases

BioCycSFRE394:GBYN-6464-MONOMER.

Family and domain databases

InterProIPR007430. VirB8.
[Graphical view]
PfamPF04335. VirB8. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameTRBF_RHISN
AccessionPrimary (citable) accession number: P55403
Entry history
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: May 14, 2014
This is version 62 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Rhizobium plasmid pNGR234a

Rhizobium plasmid pNGR234a: entries and gene names