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P55401 (TRBK_RHISN) Reviewed, UniProtKB/Swiss-Prot

Last modified July 9, 2014. Version 51. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Probable conjugal transfer protein TrbK
Gene names
Name:trbK
Ordered Locus Names:NGR_a04150
ORF Names:y4dB
Encoded onPlasmid sym pNGR234a
OrganismRhizobium sp. (strain NGR234) [Complete proteome] [HAMAP]
Taxonomic identifier394 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium

Protein attributes

Sequence length65 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existencePredicted

General annotation (Comments)

Subcellular location

Periplasm Potential.

Sequence similarities

To A.tumefaciens Ti plasmid TrbK.

Ontologies

Keywords
   Biological processConjugation
   Cellular componentPeriplasm
   DomainSignal
   Technical termComplete proteome
Plasmid
Gene Ontology (GO)
   Biological_processconjugation

Inferred from electronic annotation. Source: UniProtKB-KW

   Cellular_componentperiplasmic space

Inferred from electronic annotation. Source: UniProtKB-SubCell

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 1919 Potential
Chain20 – 6546Probable conjugal transfer protein TrbK
PRO_0000022588

Sequences

Sequence LengthMass (Da)Tools
P55401 [UniParc].

Last modified November 1, 1997. Version 1.
Checksum: 31A46C5748A96024

FASTA656,864
        10         20         30         40         50         60 
MSRAVIIALV ILVAAVSTTA TALIVNSRAS NPSAPEEQRT AKEKFFGAGK ALPPIKDGQE 


MGPRW 

« Hide

References

[1]"Molecular basis of symbiosis between Rhizobium and legumes."
Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X.
Nature 387:394-401(1997) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NGR234.
[2]"Rhizobium sp. strain NGR234 possesses a remarkable number of secretion systems."
Schmeisser C., Liesegang H., Krysciak D., Bakkou N., Le Quere A., Wollherr A., Heinemeyer I., Morgenstern B., Pommerening-Roeser A., Flores M., Palacios R., Brenner S., Gottschalk G., Schmitz R.A., Broughton W.J., Perret X., Strittmatter A.W., Streit W.R.
Appl. Environ. Microbiol. 75:4035-4045(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NGR234.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
U00090 Genomic DNA. Translation: AAB92434.1.
RefSeqNP_443811.1. NC_000914.2.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING394.NGR_a04150.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAB92434; AAB92434; NGR_a04150.
GeneID962270.
KEGGrhi:NGR_a04150.
PATRIC32301601. VBIRhiSp122450_0436.

Organism-specific databases

CMRSearch...

Phylogenomic databases

OMAIKDGQEM.
OrthoDBEOG63VC72.

Enzyme and pathway databases

BioCycRETL1328306-WGS:GSTH-6585-MONOMER.
SFRE394:GBYN-6466-MONOMER.

Family and domain databases

InterProIPR020065. Conjugal_tfr_protein_TrbK.
IPR024475. T4SS_TrbJ/K.
[Graphical view]
PfamPF10907. DUF2749. 1 hit.
[Graphical view]
ProDomPD054381. Conjugal_tfr_protein_TrbK. 1 hit.
[Graphical view] [Entries sharing at least one domain]
TIGRFAMsTIGR04361. TrbK_Ti. 1 hit.
ProtoNetSearch...

Entry information

Entry nameTRBK_RHISN
AccessionPrimary (citable) accession number: P55401
Entry history
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: July 9, 2014
This is version 51 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

Rhizobium plasmid pNGR234a

Rhizobium plasmid pNGR234a: entries and gene names