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Protein

Probable conjugal transfer protein TrbK

Gene

trbK

Organism
Rhizobium sp. (strain NGR234)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Conjugation

Enzyme and pathway databases

BioCyciRETL1328306-WGS:GSTH-6585-MONOMER.
SFRE394:GBYN-6466-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Probable conjugal transfer protein TrbK
Gene namesi
Name:trbK
Ordered Locus Names:NGR_a04150
ORF Names:y4dB
Encoded oniPlasmid sym pNGR234a0 Publication
OrganismiRhizobium sp. (strain NGR234)
Taxonomic identifieri394 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
ProteomesiUP000001054 Componenti: Plasmid sym pNGR234a

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Periplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 1919Sequence AnalysisAdd
BLAST
Chaini20 – 6546Probable conjugal transfer protein TrbKPRO_0000022588Add
BLAST

Family & Domainsi

Sequence similaritiesi

To A.tumefaciens Ti plasmid TrbK.Curated

Keywords - Domaini

Signal

Phylogenomic databases

OMAiIKDGQEM.
OrthoDBiEOG63VC72.

Family and domain databases

InterProiIPR020065. Conjugal_tfr_protein_TrbK.
IPR024475. T4SS_TrbJ/K.
[Graphical view]
PfamiPF10907. DUF2749. 1 hit.
[Graphical view]
ProDomiPD054381. Conjugal_tfr_protein_TrbK. 1 hit.
[Graphical view] [Entries sharing at least one domain]
TIGRFAMsiTIGR04361. TrbK_Ti. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P55401-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSRAVIIALV ILVAAVSTTA TALIVNSRAS NPSAPEEQRT AKEKFFGAGK
60
ALPPIKDGQE MGPRW
Length:65
Mass (Da):6,864
Last modified:November 1, 1997 - v1
Checksum:i31A46C5748A96024
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00090 Genomic DNA. Translation: AAB92434.1.
RefSeqiNP_443811.1. NC_000914.2.
WP_010875425.1. NC_000914.2.

Genome annotation databases

EnsemblBacteriaiAAB92434; AAB92434; NGR_a04150.
GeneIDi962270.
KEGGirhi:NGR_a04150.
PATRICi32301601. VBIRhiSp122450_0436.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00090 Genomic DNA. Translation: AAB92434.1.
RefSeqiNP_443811.1. NC_000914.2.
WP_010875425.1. NC_000914.2.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAB92434; AAB92434; NGR_a04150.
GeneIDi962270.
KEGGirhi:NGR_a04150.
PATRICi32301601. VBIRhiSp122450_0436.

Phylogenomic databases

OMAiIKDGQEM.
OrthoDBiEOG63VC72.

Enzyme and pathway databases

BioCyciRETL1328306-WGS:GSTH-6585-MONOMER.
SFRE394:GBYN-6466-MONOMER.

Family and domain databases

InterProiIPR020065. Conjugal_tfr_protein_TrbK.
IPR024475. T4SS_TrbJ/K.
[Graphical view]
PfamiPF10907. DUF2749. 1 hit.
[Graphical view]
ProDomiPD054381. Conjugal_tfr_protein_TrbK. 1 hit.
[Graphical view] [Entries sharing at least one domain]
TIGRFAMsiTIGR04361. TrbK_Ti. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Molecular basis of symbiosis between Rhizobium and legumes."
    Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X.
    Nature 387:394-401(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NGR234.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NGR234.

Entry informationi

Entry nameiTRBK_RHISN
AccessioniPrimary (citable) accession number: P55401
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: June 24, 2015
This is version 57 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Plasmid, Reference proteome

Documents

  1. Rhizobium plasmid pNGR234a
    Rhizobium plasmid pNGR234a: entries and gene names

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.