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P55400 (TRBJ_RHISN) Reviewed, UniProtKB/Swiss-Prot

Last modified November 13, 2013. Version 48. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Probable conjugal transfer protein TrbJ
Gene names
Name:trbJ
Ordered Locus Names:NGR_a04160
ORF Names:y4dA
Encoded onPlasmid sym pNGR234a
OrganismRhizobium sp. (strain NGR234) [Complete proteome] [HAMAP]
Taxonomic identifier394 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium

Protein attributes

Sequence length267 AA.
Sequence statusComplete.
Protein existencePredicted

General annotation (Comments)

Sequence similarities

To A.tumefaciens Ti plasmid TrbJ.

Ontologies

Keywords
   Biological processConjugation
   Technical termComplete proteome
Plasmid
Gene Ontology (GO)
   Biological_processconjugation

Inferred from electronic annotation. Source: UniProtKB-KW

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 267267Probable conjugal transfer protein TrbJ
PRO_0000065619

Sequences

Sequence LengthMass (Da)Tools
P55400 [UniParc].

Last modified November 1, 1997. Version 1.
Checksum: 2E25B03D0D989533

FASTA26729,579
        10         20         30         40         50         60 
MPRRCSMSNN LLAGLAVVAV TVGTGEPADA GTATGVATEW TQVLNNGELV ALVGKSNEQI 

        70         80         90        100        110        120 
QNQLTQISQF AQQIETQLNI YQNLLQNTAT LPSHMWGQVE RDLNRLRSIV DQGQSIAFSM 

       130        140        150        160        170        180 
GNADHVLQQR FQSYATLKTN LPRNETFSST YQAWSDTNRD TIASTLNAAS LTADQFDSEE 

       190        200        210        220        230        240 
TTMSSLRSMS ETADGQMKAL QVGHEIAAQQ VGQMQKLRGL VSQQMTMMGT WLQTEQTDKD 

       250        260 
LAQARREKFF NADVKSIPEG QKMEPRW 

« Hide

References

[1]"Molecular basis of symbiosis between Rhizobium and legumes."
Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X.
Nature 387:394-401(1997) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NGR234.
[2]"Rhizobium sp. strain NGR234 possesses a remarkable number of secretion systems."
Schmeisser C., Liesegang H., Krysciak D., Bakkou N., Le Quere A., Wollherr A., Heinemeyer I., Morgenstern B., Pommerening-Roeser A., Flores M., Palacios R., Brenner S., Gottschalk G., Schmitz R.A., Broughton W.J., Perret X., Strittmatter A.W., Streit W.R.
Appl. Environ. Microbiol. 75:4035-4045(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NGR234.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
U00090 Genomic DNA. Translation: AAB92433.1.
RefSeqNP_443810.1. NC_000914.2.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING394.NGR_a04160.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAB92433; AAB92433; NGR_a04160.
GeneID962571.
KEGGrhi:NGR_a04160.
PATRIC32301603. VBIRhiSp122450_0437.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG5314.
HOGENOMHOG000296061.
OMAARREKFF.
OrthoDBEOG63RGZ0.
ProtClustDBPRK13842.

Enzyme and pathway databases

BioCycSFRE394:GBYN-6467-MONOMER.

Family and domain databases

InterProIPR014147. T4SS_TrbJ.
IPR024475. T4SS_TrbJ/K.
[Graphical view]
PfamPF10907. DUF2749. 1 hit.
[Graphical view]
TIGRFAMsTIGR02780. TrbJ_Ti. 1 hit.
ProtoNetSearch...

Entry information

Entry nameTRBJ_RHISN
AccessionPrimary (citable) accession number: P55400
Entry history
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: November 13, 2013
This is version 48 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

Rhizobium plasmid pNGR234a

Rhizobium plasmid pNGR234a: entries and gene names