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Protein

Probable conjugal transfer protein TrbJ

Gene

trbJ

Organism
Rhizobium sp. (strain NGR234)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Conjugation

Enzyme and pathway databases

BioCyciSFRE394:GBYN-6467-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Probable conjugal transfer protein TrbJ
Gene namesi
Name:trbJ
Ordered Locus Names:NGR_a04160
ORF Names:y4dA
Encoded oniPlasmid sym pNGR234a0 Publication
OrganismiRhizobium sp. (strain NGR234)
Taxonomic identifieri394 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
ProteomesiUP000001054 Componenti: Plasmid sym pNGR234a

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 267267Probable conjugal transfer protein TrbJPRO_0000065619Add
BLAST

Family & Domainsi

Sequence similaritiesi

To A.tumefaciens Ti plasmid TrbJ.Curated

Phylogenomic databases

eggNOGiCOG5314.
HOGENOMiHOG000296061.
OMAiTMMGTWF.
OrthoDBiEOG63RGZ0.

Family and domain databases

InterProiIPR014147. T4SS_TrbJ.
IPR024475. T4SS_TrbJ/K.
[Graphical view]
PfamiPF10907. DUF2749. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02780. TrbJ_Ti. 1 hit.

Sequencei

Sequence statusi: Complete.

P55400-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPRRCSMSNN LLAGLAVVAV TVGTGEPADA GTATGVATEW TQVLNNGELV
60 70 80 90 100
ALVGKSNEQI QNQLTQISQF AQQIETQLNI YQNLLQNTAT LPSHMWGQVE
110 120 130 140 150
RDLNRLRSIV DQGQSIAFSM GNADHVLQQR FQSYATLKTN LPRNETFSST
160 170 180 190 200
YQAWSDTNRD TIASTLNAAS LTADQFDSEE TTMSSLRSMS ETADGQMKAL
210 220 230 240 250
QVGHEIAAQQ VGQMQKLRGL VSQQMTMMGT WLQTEQTDKD LAQARREKFF
260
NADVKSIPEG QKMEPRW
Length:267
Mass (Da):29,579
Last modified:November 1, 1997 - v1
Checksum:i2E25B03D0D989533
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00090 Genomic DNA. Translation: AAB92433.1.
RefSeqiNP_443810.1. NC_000914.2.
WP_010875426.1. NC_000914.2.

Genome annotation databases

EnsemblBacteriaiAAB92433; AAB92433; NGR_a04160.
GeneIDi962571.
KEGGirhi:NGR_a04160.
PATRICi32301603. VBIRhiSp122450_0437.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00090 Genomic DNA. Translation: AAB92433.1.
RefSeqiNP_443810.1. NC_000914.2.
WP_010875426.1. NC_000914.2.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAB92433; AAB92433; NGR_a04160.
GeneIDi962571.
KEGGirhi:NGR_a04160.
PATRICi32301603. VBIRhiSp122450_0437.

Phylogenomic databases

eggNOGiCOG5314.
HOGENOMiHOG000296061.
OMAiTMMGTWF.
OrthoDBiEOG63RGZ0.

Enzyme and pathway databases

BioCyciSFRE394:GBYN-6467-MONOMER.

Family and domain databases

InterProiIPR014147. T4SS_TrbJ.
IPR024475. T4SS_TrbJ/K.
[Graphical view]
PfamiPF10907. DUF2749. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02780. TrbJ_Ti. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Molecular basis of symbiosis between Rhizobium and legumes."
    Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X.
    Nature 387:394-401(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NGR234.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NGR234.

Entry informationi

Entry nameiTRBJ_RHISN
AccessioniPrimary (citable) accession number: P55400
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: June 24, 2015
This is version 54 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Plasmid, Reference proteome

Documents

  1. Rhizobium plasmid pNGR234a
    Rhizobium plasmid pNGR234a: entries and gene names

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.