Skip Header

You are using a version of Internet Explorer that may not display all features of this website. Please upgrade to a modern browser.
Contribute Send feedback
Read comments (?) or add your own

P55398 (TRBE1_RHISN) Reviewed, UniProtKB/Swiss-Prot

Last modified November 13, 2013. Version 44. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Probable conjugal transfer protein TrbE part 1
Gene names
Name:trbEA
Ordered Locus Names:NGR_a04180
ORF Names:y4cP
Encoded onPlasmid sym pNGR234a
OrganismRhizobium sp. (strain NGR234) [Complete proteome] [HAMAP]
Taxonomic identifier394 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium

Protein attributes

Sequence length149 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the TrbE/VirB4 family.

Caution

It is possible that trbEA and trbEB form a single orf.

Ontologies

Keywords
   Biological processConjugation
   Technical termComplete proteome
Plasmid
Gene Ontology (GO)
   Biological_processconjugation

Inferred from electronic annotation. Source: UniProtKB-KW

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 149149Probable conjugal transfer protein TrbE part 1
PRO_0000065613

Sequences

Sequence LengthMass (Da)Tools
P55398 [UniParc].

Last modified November 1, 1997. Version 1.
Checksum: 78B9424F310AE1F3

FASTA14916,632
        10         20         30         40         50         60 
MVALKRFRAT GPSFADLVPY AGLVDNGVLL LKDGSLMAGW YFAGPDSDSA TDFERNELSR 

        70         80         90        100        110        120 
QINAILSRLG TGWMIQVEAA RIPTYDYPSE DRCHFPDAVT RAIDAERRAH FARERGHFES 

       130        140 
KHALILTYRP SEAKKTAAQQ IHLLGRGEP 

« Hide

References

[1]"Molecular basis of symbiosis between Rhizobium and legumes."
Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X.
Nature 387:394-401(1997) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NGR234.
[2]"Rhizobium sp. strain NGR234 possesses a remarkable number of secretion systems."
Schmeisser C., Liesegang H., Krysciak D., Bakkou N., Le Quere A., Wollherr A., Heinemeyer I., Morgenstern B., Pommerening-Roeser A., Flores M., Palacios R., Brenner S., Gottschalk G., Schmitz R.A., Broughton W.J., Perret X., Strittmatter A.W., Streit W.R.
Appl. Environ. Microbiol. 75:4035-4045(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NGR234.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
U00090 Genomic DNA. Translation: AAB92431.1.
RefSeqNP_443808.1. NC_000914.2.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING394.NGR_a04180.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAB92431; AAB92431; NGR_a04180.
GeneID962609.
KEGGrhi:NGR_a04180.
PATRIC32301607. VBIRhiSp122450_0439.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG3451.
OrthoDBEOG62C98R.

Enzyme and pathway databases

BioCycSFRE394:GBYN-6469-MONOMER.

Family and domain databases

ProtoNetSearch...

Entry information

Entry nameTRBE1_RHISN
AccessionPrimary (citable) accession number: P55398
Entry history
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: November 13, 2013
This is version 44 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Rhizobium plasmid pNGR234a

Rhizobium plasmid pNGR234a: entries and gene names