Reviewed, UniProtKB/Swiss-Prot P55397 (TRBD_RHISN)

Names and origin

Protein names

Recommended name:
    Probable conjugal transfer protein trbD

Gene names

Name:	trbD
Ordered Locus Names:	NGR_a04190
ORF Names:	y4cO

Encoded on

Plasmid sym pNGR234a

Organism

Rhizobium sp. (strain NGR234) [Complete proteome] [HAMAP]

Taxonomic identifier

394 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Rhizobiaceae › Rhizobium/Agrobacterium group › Rhizobium

Protein attributes

Sequence length	99 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Inferred from homology.

General annotation (Comments)

Subcellular location	Cell membrane; Multi-pass membrane protein Potential.
Sequence similarities	Belongs to the trbD family.

Ontologies

Keywords
Biological process	Conjugation
Cellular component	Cell membrane Membrane
Domain	Transmembrane
Technical term	Complete proteome Plasmid
Gene Ontology (GO)
Biological process	conjugation Inferred from electronic annotation. Source: UniProtKB-KW
Cellular component	integral to membrane Inferred from electronic annotation. Source: UniProtKB-SubCell plasma membrane Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 99	99	Probable conjugal transfer protein trbD		PRO_0000065612
Regions
	Transmembrane	21 – 41	21	Potential
	Transmembrane	42 – 62	21	Potential

Sequences

	Sequence		Length	Mass (Da)
	P55397-1 [UniParc]. Last modified November 1, 1997. Version 1. Checksum: D7429E9BB5D536D3	FASTA	99	11,470
	10 20 30 40 50 60 MAEALSERYR NRIHRALSRP NLLMGADREL VLITGLAAVI LIFVVLTVYS ALFGVVVWIV 70 80 90 IVGLLRMMAK SDPLMRQVYV RHISYKPYYK ATTSPWRRY

References

[1]

"Molecular basis of symbiosis between Rhizobium and legumes." Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X. Nature 387:394-401(1997) [PubMed: 9163424] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

[2]

"Rhizobium sp. strain NGR234 possesses a remarkable number of secretion systems." Schmeisser C., Liesegang H., Krysciak D., Bakkou N., Le Quere A., Wollherr A., Heinemeyer I., Morgenstern B., Pommerening-Roeser A., Flores M., Palacios R., Brenner S., Gottschalk G., Schmitz R.A., Broughton W.J., Perret X., Strittmatter A.W., Streit W.R. Appl. Environ. Microbiol. 75:4035-4045(2009) [PubMed: 19376903] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBLGenBankDDBJ	U00090 Genomic DNA. Translation: AAB92430.1.
RefSeq	NP_443807.1.
3D structure databases
ModBase	Search...
Genome annotation databases
GeneID	962269.
GenomeReviews	Gene locus NGR_a04190 in contig U00090_GR.
Organism-specific databases
CMR	Search...
Family and domain databases
InterPro	IPR016704. Conjugal_tfr_TrbD. IPR007909. Conjugal_tfr_TrbD_sub. [Graphical view]
Pfam	PF05245. TrbD. 1 hit. [Graphical view]
PIRSF	PIRSF017854. T4SS_TrbD. 1 hit.
ProtoNet	Search...

Entry information

Entry name

TRBD_RHISN

Accession

Primary (citable) accession number: P55397

Entry history

Integrated into UniProtKB/Swiss-Prot:	November 1, 1997
Last sequence update:	November 1, 1997
Last modified:	October 13, 2009
This is version 43 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)