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P55396

- TRBC_RHISN

UniProt

P55396 - TRBC_RHISN

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Protein

Probable conjugal transfer protein TrbC

Gene

trbC

Organism
Rhizobium sp. (strain NGR234)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

GO - Biological processi

  1. conjugation Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

Conjugation

Enzyme and pathway databases

BioCyciSFRE394:GBYN-6471-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Probable conjugal transfer protein TrbC
Gene namesi
Name:trbC
Ordered Locus Names:NGR_a04200
ORF Names:y4cN
Encoded oniPlasmid sym pNGR234a0 Publication
OrganismiRhizobium sp. (strain NGR234)
Taxonomic identifieri394 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
ProteomesiUP000001054: Plasmid sym pNGR234a

Subcellular locationi

GO - Cellular componenti

  1. integral component of membrane Source: UniProtKB-KW
  2. plasma membrane Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 127127Probable conjugal transfer protein TrbCPRO_0000065610Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi394.NGR_a04200.

Structurei

Transmembrane

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei7 – 2721HelicalSequence AnalysisAdd
BLAST
Transmembranei50 – 7021HelicalSequence AnalysisAdd
BLAST
Transmembranei79 – 9921HelicalSequence AnalysisAdd
BLAST

Family & Domainsi

Sequence similaritiesi

Belongs to the TrbC family.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiCOG3838.
HOGENOMiHOG000289414.
KOiK03197.
OMAiEWFTRIR.
OrthoDBiEOG6KDKT8.

Family and domain databases

InterProiIPR007039. TrbC/VirB2.
[Graphical view]
PfamiPF04956. TrbC. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P55396-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MSRKNEFISI ALLASPLILA SVAPALASSG GSLPWEGPLE QIQESITGPV
60 70 80 90 100
AGYIALAAVA IAGGMLIFGG ELNDFARRLM YVVLVAGILL GATTIVGLFG
110 120
ATGASIGLTN DRATSTRPSA EGEGAHG
Length:127
Mass (Da):12,738
Last modified:November 1, 1997 - v1
Checksum:i92D46CD03AA00DE4
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
U00090 Genomic DNA. Translation: AAB92429.1.
RefSeqiNP_443806.1. NC_000914.2.

Genome annotation databases

EnsemblBacteriaiAAB92429; AAB92429; NGR_a04200.
GeneIDi962556.
KEGGirhi:NGR_a04200.
PATRICi32301611. VBIRhiSp122450_0441.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
U00090 Genomic DNA. Translation: AAB92429.1 .
RefSeqi NP_443806.1. NC_000914.2.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 394.NGR_a04200.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAB92429 ; AAB92429 ; NGR_a04200 .
GeneIDi 962556.
KEGGi rhi:NGR_a04200.
PATRICi 32301611. VBIRhiSp122450_0441.

Phylogenomic databases

eggNOGi COG3838.
HOGENOMi HOG000289414.
KOi K03197.
OMAi EWFTRIR.
OrthoDBi EOG6KDKT8.

Enzyme and pathway databases

BioCyci SFRE394:GBYN-6471-MONOMER.

Family and domain databases

InterProi IPR007039. TrbC/VirB2.
[Graphical view ]
Pfami PF04956. TrbC. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Molecular basis of symbiosis between Rhizobium and legumes."
    Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X.
    Nature 387:394-401(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NGR234.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NGR234.

Entry informationi

Entry nameiTRBC_RHISN
AccessioniPrimary (citable) accession number: P55396
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: October 29, 2014
This is version 66 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Plasmid, Reference proteome

Documents

  1. Rhizobium plasmid pNGR234a
    Rhizobium plasmid pNGR234a: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3