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P55396

- TRBC_RHISN

UniProt

P55396 - TRBC_RHISN

Protein

Probable conjugal transfer protein TrbC

Gene

trbC

Organism
Rhizobium sp. (strain NGR234)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
  1. Functioni

    GO - Biological processi

    1. conjugation Source: UniProtKB-KW

    Keywords - Biological processi

    Conjugation

    Enzyme and pathway databases

    BioCyciSFRE394:GBYN-6471-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Probable conjugal transfer protein TrbC
    Gene namesi
    Name:trbC
    Ordered Locus Names:NGR_a04200
    ORF Names:y4cN
    Encoded oniPlasmid sym pNGR234a0 Publication
    OrganismiRhizobium sp. (strain NGR234)
    Taxonomic identifieri394 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
    ProteomesiUP000001054: Plasmid sym pNGR234a

    Subcellular locationi

    GO - Cellular componenti

    1. integral component of membrane Source: UniProtKB-KW
    2. plasma membrane Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    Cell membrane, Membrane

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 127127Probable conjugal transfer protein TrbCPRO_0000065610Add
    BLAST

    Interactioni

    Protein-protein interaction databases

    STRINGi394.NGR_a04200.

    Structurei

    Transmembrane

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Transmembranei7 – 2721HelicalSequence AnalysisAdd
    BLAST
    Transmembranei50 – 7021HelicalSequence AnalysisAdd
    BLAST
    Transmembranei79 – 9921HelicalSequence AnalysisAdd
    BLAST

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the TrbC family.Curated

    Keywords - Domaini

    Transmembrane, Transmembrane helix

    Phylogenomic databases

    eggNOGiCOG3838.
    HOGENOMiHOG000289414.
    KOiK03197.
    OMAiEWFTRIR.
    OrthoDBiEOG6KDKT8.

    Family and domain databases

    InterProiIPR007039. TrbC/VirB2.
    [Graphical view]
    PfamiPF04956. TrbC. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    P55396-1 [UniParc]FASTAAdd to Basket

    « Hide

    MSRKNEFISI ALLASPLILA SVAPALASSG GSLPWEGPLE QIQESITGPV    50
    AGYIALAAVA IAGGMLIFGG ELNDFARRLM YVVLVAGILL GATTIVGLFG 100
    ATGASIGLTN DRATSTRPSA EGEGAHG 127
    Length:127
    Mass (Da):12,738
    Last modified:November 1, 1997 - v1
    Checksum:i92D46CD03AA00DE4
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    U00090 Genomic DNA. Translation: AAB92429.1.
    RefSeqiNP_443806.1. NC_000914.2.

    Genome annotation databases

    EnsemblBacteriaiAAB92429; AAB92429; NGR_a04200.
    GeneIDi962556.
    KEGGirhi:NGR_a04200.
    PATRICi32301611. VBIRhiSp122450_0441.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    U00090 Genomic DNA. Translation: AAB92429.1 .
    RefSeqi NP_443806.1. NC_000914.2.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 394.NGR_a04200.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAB92429 ; AAB92429 ; NGR_a04200 .
    GeneIDi 962556.
    KEGGi rhi:NGR_a04200.
    PATRICi 32301611. VBIRhiSp122450_0441.

    Phylogenomic databases

    eggNOGi COG3838.
    HOGENOMi HOG000289414.
    KOi K03197.
    OMAi EWFTRIR.
    OrthoDBi EOG6KDKT8.

    Enzyme and pathway databases

    BioCyci SFRE394:GBYN-6471-MONOMER.

    Family and domain databases

    InterProi IPR007039. TrbC/VirB2.
    [Graphical view ]
    Pfami PF04956. TrbC. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Molecular basis of symbiosis between Rhizobium and legumes."
      Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X.
      Nature 387:394-401(1997) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: NGR234.
    2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: NGR234.

    Entry informationi

    Entry nameiTRBC_RHISN
    AccessioniPrimary (citable) accession number: P55396
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: November 1, 1997
    Last sequence update: November 1, 1997
    Last modified: October 1, 2014
    This is version 65 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Plasmid, Reference proteome

    Documents

    1. Rhizobium plasmid pNGR234a
      Rhizobium plasmid pNGR234a: entries and gene names
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3