P55396 (TRBC_RHISN) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
Probable conjugal transfer protein trbC

Gene names

Name:	trbC
Ordered Locus Names:	NGR_a04200
ORF Names:	y4cN

Encoded on

Plasmid sym pNGR234a

Organism

Rhizobium sp. (strain NGR234) [Complete proteome] [HAMAP]

Taxonomic identifier

394 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Rhizobiaceae › Sinorhizobium/Ensifer group › Sinorhizobium

Protein attributes

Sequence length	127 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Subcellular location	Cell membrane; Multi-pass membrane protein Potential.
Sequence similarities	Belongs to the trbC family.

Ontologies

Keywords
Biological process	Conjugation
Cellular component	Cell membrane Membrane
Domain	Transmembrane Transmembrane helix
Technical term	Complete proteome Plasmid
Gene Ontology (GO)
Biological process	conjugation Inferred from electronic annotation. Source: UniProtKB-KW
Cellular component	integral to membrane Inferred from electronic annotation. Source: UniProtKB-KW plasma membrane Inferred from electronic annotation. Source: UniProtKB-SubCell
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 127	127	Probable conjugal transfer protein trbC		PRO_0000065610
Regions
	Transmembrane	7 – 27	21	Helical; Potential
	Transmembrane	50 – 70	21	Helical; Potential
	Transmembrane	79 – 99	21	Helical; Potential

Sequences

	Sequence		Length	Mass (Da)
	P55396 [UniParc]. Last modified November 1, 1997. Version 1. Checksum: 92D46CD03AA00DE4	FASTA	127	12,738
	10 20 30 40 50 60 MSRKNEFISI ALLASPLILA SVAPALASSG GSLPWEGPLE QIQESITGPV AGYIALAAVA 70 80 90 100 110 120 IAGGMLIFGG ELNDFARRLM YVVLVAGILL GATTIVGLFG ATGASIGLTN DRATSTRPSA EGEGAHG

References

[1]

"Molecular basis of symbiosis between Rhizobium and legumes." Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X. Nature 387:394-401(1997) [PubMed: 9163424] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: NGR234.

[2]

"Rhizobium sp. strain NGR234 possesses a remarkable number of secretion systems." Schmeisser C., Liesegang H., Krysciak D., Bakkou N., Le Quere A., Wollherr A., Heinemeyer I., Morgenstern B., Pommerening-Roeser A., Flores M., Palacios R., Brenner S., Gottschalk G., Schmitz R.A., Broughton W.J., Perret X., Strittmatter A.W., Streit W.R. Appl. Environ. Microbiol. 75:4035-4045(2009) [PubMed: 19376903] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: NGR234.

Cross-references

Sequence databases
EMBL GenBank DDBJ	U00090 Genomic DNA. Translation: AAB92429.1.
RefSeq	NP_443806.1. NC_000914.2.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	P55396.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	962556.
GenomeReviews	Gene locus NGR_a04200 in contig U00090_GR.
KEGG	rhi:NGR_a04200.
PATRIC	32301611. VBIRhiSp122450_0441.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG623876.
OMA	LIFGGDM.
ProtClustDB	CLSK782166.
Family and domain databases
InterPro	IPR007039. TrbC/VirB2. [Graphical view]
KO	K03197.
Pfam	PF04956. TrbC. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

TRBC_RHISN

Accession

Primary (citable) accession number: P55396

Entry history

Integrated into UniProtKB/Swiss-Prot:	November 1, 1997
Last sequence update:	November 1, 1997
Last modified:	January 25, 2012
This is version 54 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program