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P55396 (TRBC_RHISN) Reviewed, UniProtKB/Swiss-Prot

Last modified February 19, 2014. Version 63. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Probable conjugal transfer protein TrbC
Gene names
Name:trbC
Ordered Locus Names:NGR_a04200
ORF Names:y4cN
Encoded onPlasmid sym pNGR234a
OrganismRhizobium sp. (strain NGR234) [Complete proteome] [HAMAP]
Taxonomic identifier394 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium

Protein attributes

Sequence length127 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Subcellular location

Cell membrane; Multi-pass membrane protein Potential.

Sequence similarities

Belongs to the TrbC family.

Ontologies

Keywords
   Biological processConjugation
   Cellular componentCell membrane
Membrane
   DomainTransmembrane
Transmembrane helix
   Technical termComplete proteome
Plasmid
Gene Ontology (GO)
   Biological_processconjugation

Inferred from electronic annotation. Source: UniProtKB-KW

   Cellular_componentintegral component of membrane

Inferred from electronic annotation. Source: UniProtKB-KW

plasma membrane

Inferred from electronic annotation. Source: UniProtKB-SubCell

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 127127Probable conjugal transfer protein TrbC
PRO_0000065610

Regions

Transmembrane7 – 2721Helical; Potential
Transmembrane50 – 7021Helical; Potential
Transmembrane79 – 9921Helical; Potential

Sequences

Sequence LengthMass (Da)Tools
P55396 [UniParc].

Last modified November 1, 1997. Version 1.
Checksum: 92D46CD03AA00DE4

FASTA12712,738
        10         20         30         40         50         60 
MSRKNEFISI ALLASPLILA SVAPALASSG GSLPWEGPLE QIQESITGPV AGYIALAAVA 

        70         80         90        100        110        120 
IAGGMLIFGG ELNDFARRLM YVVLVAGILL GATTIVGLFG ATGASIGLTN DRATSTRPSA 


EGEGAHG 

« Hide

References

[1]"Molecular basis of symbiosis between Rhizobium and legumes."
Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X.
Nature 387:394-401(1997) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NGR234.
[2]"Rhizobium sp. strain NGR234 possesses a remarkable number of secretion systems."
Schmeisser C., Liesegang H., Krysciak D., Bakkou N., Le Quere A., Wollherr A., Heinemeyer I., Morgenstern B., Pommerening-Roeser A., Flores M., Palacios R., Brenner S., Gottschalk G., Schmitz R.A., Broughton W.J., Perret X., Strittmatter A.W., Streit W.R.
Appl. Environ. Microbiol. 75:4035-4045(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NGR234.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
U00090 Genomic DNA. Translation: AAB92429.1.
RefSeqNP_443806.1. NC_000914.2.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING394.NGR_a04200.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAB92429; AAB92429; NGR_a04200.
GeneID962556.
KEGGrhi:NGR_a04200.
PATRIC32301611. VBIRhiSp122450_0441.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG3838.
HOGENOMHOG000289414.
KOK03197.
OMAEWFTRIR.
OrthoDBEOG6KDKT8.
ProtClustDBCLSK782166.

Enzyme and pathway databases

BioCycSFRE394:GBYN-6471-MONOMER.

Family and domain databases

InterProIPR007039. TrbC/VirB2.
[Graphical view]
PfamPF04956. TrbC. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameTRBC_RHISN
AccessionPrimary (citable) accession number: P55396
Entry history
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: February 19, 2014
This is version 63 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Rhizobium plasmid pNGR234a

Rhizobium plasmid pNGR234a: entries and gene names