Reviewed, UniProtKB/Swiss-Prot P55390 (Y4CH_RHISN)

Names and origin

Protein names

Recommended name:
    Probable cold shock protein y4cH

Gene names

Ordered Locus Names:	NGR_a00060
ORF Names:	y4cH

Encoded on

Plasmid sym pNGR234a

Organism

Rhizobium sp. (strain NGR234) [Complete proteome] [HAMAP]

Taxonomic identifier

394 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Rhizobiaceae › Rhizobium/Agrobacterium group › Rhizobium

Protein attributes

Sequence length	69 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Predicted.

General annotation (Comments)

Subcellular location	Cytoplasm Potential.
Sequence similarities	Contains 1 CSD (cold-shock) domain.

Ontologies

Keywords
Biological process	Transcription Transcription regulation
Cellular component	Cytoplasm
Ligand	DNA-binding
Molecular function	Activator
Technical term	Complete proteome Plasmid
Gene Ontology (GO)
Biological process	regulation of transcription, DNA-dependent Inferred from electronic annotation. Source: InterPro transcription Inferred from electronic annotation. Source: UniProtKB-KW
Cellular component	cytoplasm Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular function	DNA binding Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 69	69	Probable cold shock protein y4cH		PRO_0000100346
Regions
	Domain	5 – 65	61	CSD

Sequences

	Sequence		Length	Mass (Da)
	P55390-1 [UniParc]. Last modified November 1, 1997. Version 1. Checksum: 1701934B556EAA60	FASTA	69	7,564
	10 20 30 40 50 60 MMATGTVKWF NATKGFGFIQ PDDGSADVFV HISAVERAGL RELKDGQKIS YELVKDRKSG KMSADNLQA

References

[1]

"Molecular basis of symbiosis between Rhizobium and legumes." Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X. Nature 387:394-401(1997) [PubMed: 9163424] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

[2]

"Rhizobium sp. strain NGR234 possesses a remarkable number of secretion systems." Schmeisser C., Liesegang H., Krysciak D., Bakkou N., Le Quere A., Wollherr A., Heinemeyer I., Morgenstern B., Pommerening-Roeser A., Flores M., Palacios R., Brenner S., Gottschalk G., Schmitz R.A., Broughton W.J., Perret X., Strittmatter A.W., Streit W.R. Appl. Environ. Microbiol. 75:4035-4045(2009) [PubMed: 19376903] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBLGenBankDDBJ	U00090 Genomic DNA. Translation: AAB92423.1.
RefSeq	NP_443800.1.
3D structure databases
ModBase	Search...
Genome annotation databases
GeneID	962296.
GenomeReviews	Gene locus NGR_a00060 in contig U00090_GR.
Organism-specific databases
CMR	Search...
Family and domain databases
InterPro	IPR019844. Cold-shock_CS. IPR012156. Cold_shock_CspA. IPR011129. Cold_shock_prot. IPR002059. CSP_DNA_bd. IPR012340. NA-bd_OB-fold. IPR016027. NA-bd_OB-fold-like. [Graphical view]
Gene3D	G3DSA:2.40.50.140. OB_NA_bd_sub. 1 hit.
Pfam	PF00313. CSD. 1 hit. [Graphical view]
PIRSF	PIRSF002599. Cold_shock_A. 1 hit.
PRINTS	PR00050. COLDSHOCK.
SMART	SM00357. CSP. 1 hit. [Graphical view]
PROSITE	PS00352. COLD_SHOCK. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Y4CH_RHISN

Accession

Primary (citable) accession number: P55390

Entry history

Integrated into UniProtKB/Swiss-Prot:	November 1, 1997
Last sequence update:	November 1, 1997
Last modified:	November 24, 2009
This is version 46 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)