Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Probable DNA-invertase y4cG

Gene

NGR_a00070

Organism
Rhizobium sp. (strain NGR234)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei23 – 231O-(5'-phospho-DNA)-serine intermediatePROSITE-ProRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

DNA invertase

Keywords - Biological processi

DNA integration, DNA recombination

Keywords - Ligandi

DNA-binding

Enzyme and pathway databases

BioCyciRETL1328306-WGS:GSTH-5842-MONOMER.
RETL1328306-WGS:GSTH-6334-MONOMER.
SFRE394:GBYN-6058-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Probable DNA-invertase y4cG
Gene namesi
Ordered Locus Names:NGR_a00070
ORF Names:y4cG
Encoded oniPlasmid sym pNGR234a0 Publication
OrganismiRhizobium sp. (strain NGR234)
Taxonomic identifieri394 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
ProteomesiUP000001054 Componenti: Plasmid sym pNGR234a

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 305305Probable DNA-invertase y4cGPRO_0000196386Add
BLAST

Structurei

3D structure databases

ProteinModelPortaliP55389.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini15 – 148134Resolvase/invertase-type recombinase catalyticPROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 resolvase/invertase-type recombinase catalytic domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiCOG1961.
HOGENOMiHOG000268365.
OMAiHTWDDIA.
OrthoDBiEOG6MD98B.

Family and domain databases

Gene3Di3.40.50.1390. 1 hit.
InterProiIPR006118. Recombinase_CS.
IPR006119. Resolv_N.
[Graphical view]
PfamiPF00239. Resolvase. 1 hit.
[Graphical view]
SMARTiSM00857. Resolvase. 1 hit.
[Graphical view]
SUPFAMiSSF53041. SSF53041. 1 hit.
PROSITEiPS00397. RECOMBINASES_1. 1 hit.
PS00398. RECOMBINASES_2. 1 hit.
PS51736. RECOMBINASES_3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P55389-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MATAAYLNSP SLQQRLIGYA RVSTEDQLND AQVDELRAAG CHRIHQEHGS
60 70 80 90 100
GASRARPVLA KLLKDLAMGD VLVVVRLDRL ARSVSHLLDV IEDLEKRGVH
110 120 130 140 150
FRSLRDPIDT STPHGMFSLQ VLGAVAQLER ALIAERTKSG MQAAKARGRL
160 170 180 190 200
AGNPGLRERR PEAIRAVSAA RERAYLDELI VSAQTWLPTV RRLRPRHSWD
210 220 230 240 250
NVVRILNRRG HDWTVERLRR AVHRLVREKL AEPELLARSL RRPPEDHLMR
260 270 280 290 300
LVAGIAIADP NLSLRDIAAQ LDQMQERPPR GGRKWQPSSV RALLDEASRI

GLVRA
Length:305
Mass (Da):34,277
Last modified:November 1, 1997 - v1
Checksum:i48C03BD3A4A9420F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00090 Genomic DNA. Translation: AAB92422.1.
RefSeqiNP_443799.1. NC_000914.2.
WP_010875050.1. NC_000914.2.

Genome annotation databases

EnsemblBacteriaiAAB92422; AAB92422; NGR_a00070.
GeneIDi962300.
KEGGirhi:NGR_a00070.
PATRICi32300739. VBIRhiSp122450_0005.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00090 Genomic DNA. Translation: AAB92422.1.
RefSeqiNP_443799.1. NC_000914.2.
WP_010875050.1. NC_000914.2.

3D structure databases

ProteinModelPortaliP55389.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAB92422; AAB92422; NGR_a00070.
GeneIDi962300.
KEGGirhi:NGR_a00070.
PATRICi32300739. VBIRhiSp122450_0005.

Phylogenomic databases

eggNOGiCOG1961.
HOGENOMiHOG000268365.
OMAiHTWDDIA.
OrthoDBiEOG6MD98B.

Enzyme and pathway databases

BioCyciRETL1328306-WGS:GSTH-5842-MONOMER.
RETL1328306-WGS:GSTH-6334-MONOMER.
SFRE394:GBYN-6058-MONOMER.

Family and domain databases

Gene3Di3.40.50.1390. 1 hit.
InterProiIPR006118. Recombinase_CS.
IPR006119. Resolv_N.
[Graphical view]
PfamiPF00239. Resolvase. 1 hit.
[Graphical view]
SMARTiSM00857. Resolvase. 1 hit.
[Graphical view]
SUPFAMiSSF53041. SSF53041. 1 hit.
PROSITEiPS00397. RECOMBINASES_1. 1 hit.
PS00398. RECOMBINASES_2. 1 hit.
PS51736. RECOMBINASES_3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Molecular basis of symbiosis between Rhizobium and legumes."
    Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X.
    Nature 387:394-401(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NGR234.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NGR234.

Entry informationi

Entry nameiY4CG_RHISN
AccessioniPrimary (citable) accession number: P55389
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: June 24, 2015
This is version 72 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Plasmid, Reference proteome

Documents

  1. Rhizobium plasmid pNGR234a
    Rhizobium plasmid pNGR234a: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.