P55388 (Y4CF_RHISN) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
Uncharacterized protein y4cF

Gene names

Ordered Locus Names:	NGR_a00080
ORF Names:	y4cF

Encoded on

Plasmid sym pNGR234a

Organism

Rhizobium sp. (strain NGR234) [Complete proteome] [HAMAP]

Taxonomic identifier

394 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Rhizobiaceae › Sinorhizobium/Ensifer group › Sinorhizobium

Protein attributes

Sequence length	380 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Technical term	Complete proteome Plasmid
Gene Ontology (GO)
None. [Check GOA]

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 380	380	Uncharacterized protein y4cF		PRO_0000200816

Sequences

	Sequence		Length	Mass (Da)
	P55388 [UniParc]. Last modified November 1, 1997. Version 1. Checksum: B2C7C680D57F86E0	FASTA	380	41,847
	10 20 30 40 50 60 MAYDLAKIST TALMRPAFEA GIGFTRLDER IARSPVGSGW IERMHFLDAC ASLWIDGELV 70 80 90 100 110 120 HLEDLVLHDA TRDIRTPTHE LTIARDVLRT RRRIAAQSPD WPLSTEGIRT LRQTSDINPV 130 140 150 160 170 180 GVEAVEPADV IRPAVAIDPE GEGDDGNDAK DLPGVDYAAI DAVLARSEAA IEDARRPGRA 190 200 210 220 230 240 GANSWAAEKD PLVYDLDWDE DARLVEWRSV LRQAQDLPAV LQAIVALDAW NELSVLQHAP 250 260 270 280 290 300 WLGRLLCASI LREAGITTGA HLAAINLGLK TIPVDRRRHR GRETRLLAIA HGLLAAAEIG 310 320 330 340 350 360 MKEHDRLTLA KTMMDRKLDG RRTSSKLPEL VELVMAKPLV SAGMVSKTLE VTPQAARRIV 370 380 TELGLREMTG RGRFRAWGVI

References

[1]

"Molecular basis of symbiosis between Rhizobium and legumes." Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X. Nature 387:394-401(1997) [PubMed: 9163424] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: NGR234.

[2]

"Rhizobium sp. strain NGR234 possesses a remarkable number of secretion systems." Schmeisser C., Liesegang H., Krysciak D., Bakkou N., Le Quere A., Wollherr A., Heinemeyer I., Morgenstern B., Pommerening-Roeser A., Flores M., Palacios R., Brenner S., Gottschalk G., Schmitz R.A., Broughton W.J., Perret X., Strittmatter A.W., Streit W.R. Appl. Environ. Microbiol. 75:4035-4045(2009) [PubMed: 19376903] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: NGR234.

Cross-references

Sequence databases
EMBL GenBank DDBJ	U00090 Genomic DNA. Translation: AAB91636.1.
PIR	T28633.
RefSeq	NP_443798.1. NC_000914.2.
3D structure databases
ProteinModelPortal	P55388.
ModBase	Search...
Protein-protein interaction databases
STRING	P55388.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	962266.
GenomeReviews	Gene locus NGR_a00080 in contig U00090_GR.
KEGG	rhi:NGR_a00080.
PATRIC	32300741. VBIRhiSp122450_0006.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG299604.
OMA	AGMVAKT.
ProtClustDB	CLSK2301495.
Family and domain databases
InterPro	IPR011670. DUF1612. IPR021068. Uncharacterised_HTH_DNA-bd. [Graphical view]
Pfam	PF07756. DUF1612. 1 hit. PF11972. HTH_13. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Y4CF_RHISN

Accession

Primary (citable) accession number: P55388

Entry history

Integrated into UniProtKB/Swiss-Prot:	November 1, 1997
Last sequence update:	November 1, 1997
Last modified:	January 25, 2012
This is version 42 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program