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Protein

Uncharacterized protein y4cD

Gene

NGR_a00100

Organism
Rhizobium sp. (strain NGR234)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Biological processi

  1. signal transduction Source: InterPro
Complete GO annotation...

Enzyme and pathway databases

BioCyciSFRE394:GBYN-6061-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein y4cD
Gene namesi
Ordered Locus Names:NGR_a00100
ORF Names:y4cD
Encoded oniPlasmid sym pNGR234a0 Publication
OrganismiRhizobium sp. (strain NGR234)
Taxonomic identifieri394 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
ProteomesiUP000001054: Plasmid sym pNGR234a

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 640640Uncharacterized protein y4cDPRO_0000200814Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi394.NGR_a00100.

Structurei

3D structure databases

ProteinModelPortaliP55386.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiNOG82334.
HOGENOMiHOG000288132.
OMAiCKGWRNK.
OrthoDBiEOG63Z73S.

Family and domain databases

InterProiIPR000157. TIR_dom.
[Graphical view]
PfamiPF13676. TIR_2. 1 hit.
[Graphical view]
SMARTiSM00255. TIR. 1 hit.
[Graphical view]
SUPFAMiSSF52200. SSF52200. 1 hit.

Sequencei

Sequence statusi: Complete.

P55386-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKYDFSTLSP DDFENLSRDL VGAETGVRFE AFTVGADDGM DGRHAKADGS
60 70 80 90 100
IILQAKHYLR SGFSKLKSKM REERVSIDEL APQRYILTTS VPLTPANKAT
110 120 130 140 150
LTEIIGPSLV GPGDIFGADD LNGLLRSYPE IVKAHEGLWA HSTPVLEEVV
160 170 180 190 200
TNAVRKAMAP AEVPKTLARL MPPPGAADAP IEPVKRDTIF IIKASPIDDE
210 220 230 240 250
FTLWLAPKLE AEGYQVFADV LTLMPGERWR REITSALRHR AVKVLLLCRD
260 270 280 290 300
SSLEDSSIQD DLDIALETGK ELGDQRFVIP LRMETFRKIK GLGDTVAVDF
310 320 330 340 350
VRNWGEGLLK LIDTLQRQKV QRSIDTMINP NWEIYRRRGA VPIIEVPERL
360 370 380 390 400
TSNWLRVAEA PDFIRYFECS GSINKGRLQG AIDSYGHPCA LVGGSGFLAF
410 420 430 440 450
GGVPEIEMAF EAVGRFKLKH EIPLVEFTEG GFQRLRIDRQ IASNLVVAML
460 470 480 490 500
KKAWFNYCKR NGFIEHGYSN GIGFHASPEQ APTGKRIPWG NQAEKKRSSM
510 520 530 540 550
LRNSAKGHIW QFGVTAMPAF WPFWHFKLKS RVLFAQDNDT PAGLVVDDPK
560 570 580 590 600
KLHRLRRSVC KGWRNKQWYG RLLAFLELLS GESAFVRLPL SETETFVIEA
610 620 630 640
SPMLFSSPVS TVLPNDLDDE DEELDDSTLG RPDSDEEGGE
Length:640
Mass (Da):71,610
Last modified:November 1, 1997 - v1
Checksum:i829BF90C595A3C0E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00090 Genomic DNA. Translation: AAB91634.1.
PIRiT28631.
RefSeqiNP_443796.1. NC_000914.2.
WP_010875053.1. NC_000914.2.

Genome annotation databases

EnsemblBacteriaiAAB91634; AAB91634; NGR_a00100.
GeneIDi962586.
KEGGirhi:NGR_a00100.
PATRICi32300747. VBIRhiSp122450_0009.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00090 Genomic DNA. Translation: AAB91634.1.
PIRiT28631.
RefSeqiNP_443796.1. NC_000914.2.
WP_010875053.1. NC_000914.2.

3D structure databases

ProteinModelPortaliP55386.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi394.NGR_a00100.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAB91634; AAB91634; NGR_a00100.
GeneIDi962586.
KEGGirhi:NGR_a00100.
PATRICi32300747. VBIRhiSp122450_0009.

Phylogenomic databases

eggNOGiNOG82334.
HOGENOMiHOG000288132.
OMAiCKGWRNK.
OrthoDBiEOG63Z73S.

Enzyme and pathway databases

BioCyciSFRE394:GBYN-6061-MONOMER.

Family and domain databases

InterProiIPR000157. TIR_dom.
[Graphical view]
PfamiPF13676. TIR_2. 1 hit.
[Graphical view]
SMARTiSM00255. TIR. 1 hit.
[Graphical view]
SUPFAMiSSF52200. SSF52200. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Molecular basis of symbiosis between Rhizobium and legumes."
    Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X.
    Nature 387:394-401(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NGR234.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NGR234.

Entry informationi

Entry nameiY4CD_RHISN
AccessioniPrimary (citable) accession number: P55386
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: February 4, 2015
This is version 61 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Plasmid, Reference proteome

Documents

  1. Rhizobium plasmid pNGR234a
    Rhizobium plasmid pNGR234a: entries and gene names

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.