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P55386 (Y4CD_RHISN) Reviewed, UniProtKB/Swiss-Prot

Last modified November 13, 2013. Version 56. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Uncharacterized protein y4cD
Gene names
Ordered Locus Names:NGR_a00100
ORF Names:y4cD
Encoded onPlasmid sym pNGR234a
OrganismRhizobium sp. (strain NGR234) [Complete proteome] [HAMAP]
Taxonomic identifier394 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium

Protein attributes

Sequence length640 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Technical termComplete proteome
Plasmid
Gene Ontology (GO)
   Biological_processsignal transduction

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 640640Uncharacterized protein y4cD
PRO_0000200814

Sequences

Sequence LengthMass (Da)Tools
P55386 [UniParc].

Last modified November 1, 1997. Version 1.
Checksum: 829BF90C595A3C0E

FASTA64071,610
        10         20         30         40         50         60 
MKYDFSTLSP DDFENLSRDL VGAETGVRFE AFTVGADDGM DGRHAKADGS IILQAKHYLR 

        70         80         90        100        110        120 
SGFSKLKSKM REERVSIDEL APQRYILTTS VPLTPANKAT LTEIIGPSLV GPGDIFGADD 

       130        140        150        160        170        180 
LNGLLRSYPE IVKAHEGLWA HSTPVLEEVV TNAVRKAMAP AEVPKTLARL MPPPGAADAP 

       190        200        210        220        230        240 
IEPVKRDTIF IIKASPIDDE FTLWLAPKLE AEGYQVFADV LTLMPGERWR REITSALRHR 

       250        260        270        280        290        300 
AVKVLLLCRD SSLEDSSIQD DLDIALETGK ELGDQRFVIP LRMETFRKIK GLGDTVAVDF 

       310        320        330        340        350        360 
VRNWGEGLLK LIDTLQRQKV QRSIDTMINP NWEIYRRRGA VPIIEVPERL TSNWLRVAEA 

       370        380        390        400        410        420 
PDFIRYFECS GSINKGRLQG AIDSYGHPCA LVGGSGFLAF GGVPEIEMAF EAVGRFKLKH 

       430        440        450        460        470        480 
EIPLVEFTEG GFQRLRIDRQ IASNLVVAML KKAWFNYCKR NGFIEHGYSN GIGFHASPEQ 

       490        500        510        520        530        540 
APTGKRIPWG NQAEKKRSSM LRNSAKGHIW QFGVTAMPAF WPFWHFKLKS RVLFAQDNDT 

       550        560        570        580        590        600 
PAGLVVDDPK KLHRLRRSVC KGWRNKQWYG RLLAFLELLS GESAFVRLPL SETETFVIEA 

       610        620        630        640 
SPMLFSSPVS TVLPNDLDDE DEELDDSTLG RPDSDEEGGE 

« Hide

References

[1]"Molecular basis of symbiosis between Rhizobium and legumes."
Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X.
Nature 387:394-401(1997) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NGR234.
[2]"Rhizobium sp. strain NGR234 possesses a remarkable number of secretion systems."
Schmeisser C., Liesegang H., Krysciak D., Bakkou N., Le Quere A., Wollherr A., Heinemeyer I., Morgenstern B., Pommerening-Roeser A., Flores M., Palacios R., Brenner S., Gottschalk G., Schmitz R.A., Broughton W.J., Perret X., Strittmatter A.W., Streit W.R.
Appl. Environ. Microbiol. 75:4035-4045(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NGR234.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
U00090 Genomic DNA. Translation: AAB91634.1.
PIRT28631.
RefSeqNP_443796.1. NC_000914.2.

3D structure databases

ProteinModelPortalP55386.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING394.NGR_a00100.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAB91634; AAB91634; NGR_a00100.
GeneID962586.
KEGGrhi:NGR_a00100.
PATRIC32300747. VBIRhiSp122450_0009.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGNOG82334.
HOGENOMHOG000288132.
OMACKGWRNK.
OrthoDBEOG63Z73S.
ProtClustDBCLSK893850.

Enzyme and pathway databases

BioCycSFRE394:GBYN-6061-MONOMER.

Family and domain databases

InterProIPR000157. TIR_dom.
[Graphical view]
PfamPF13676. TIR_2. 1 hit.
[Graphical view]
SMARTSM00255. TIR. 1 hit.
[Graphical view]
SUPFAMSSF52200. SSF52200. 1 hit.
ProtoNetSearch...

Entry information

Entry nameY4CD_RHISN
AccessionPrimary (citable) accession number: P55386
Entry history
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: November 13, 2013
This is version 56 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

Rhizobium plasmid pNGR234a

Rhizobium plasmid pNGR234a: entries and gene names