Reviewed, UniProtKB/Swiss-Prot P55379 (Y4BL_RHISN)

Names and origin

Protein names

Recommended name:
    Putative transposase y4bL/y4kJ/y4tB

Gene names

Ordered Locus Names:	NGR_a00180
ORF Names:	y4bL
AND
Ordered Locus Names:	NGR_a02860
ORF Names:	y4kJ
AND
Ordered Locus Names:	NGR_a01560
ORF Names:	y4tB

Encoded on

Plasmid sym pNGR234a

Organism

Rhizobium sp. (strain NGR234) [Complete proteome] [HAMAP]

Taxonomic identifier

394 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Rhizobiaceae › Rhizobium/Agrobacterium group › Rhizobium

Protein attributes

Sequence length	516 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Inferred from homology.

General annotation (Comments)

Sequence similarities

Belongs to the transposase IS21/IS408/IS1162 family. Contains 1 HTH IS408-type DNA-binding domain. Contains 1 integrase catalytic domain.

Ontologies

Keywords
Biological process	DNA recombination Transposition
Ligand	DNA-binding
Technical term	Complete proteome Plasmid Transposable element
Gene Ontology (GO)
Biological process	DNA integration Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: UniProtKB-KW regulation of transcription, DNA-dependent Inferred from electronic annotation. Source: InterPro transcription initiation Inferred from electronic annotation. Source: InterPro transposition Inferred from electronic annotation. Source: UniProtKB-KW
Molecular function	sigma factor activity Inferred from electronic annotation. Source: InterPro transcription factor activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 516	516	Putative transposase y4bL/y4kJ/y4tB		PRO_0000075472
Regions
	Domain	15 – 96	82	HTH IS408-type
	Domain	138 – 319	182	Integrase catalytic

Sequences

	Sequence		Length	Mass (Da)
	P55379-1 [UniParc]. Last modified November 1, 1997. Version 1. Checksum: 0ADF071C6DEA4A27	FASTA	516	58,267
	10 20 30 40 50 60 MPRRKQARRT TVRDIRTILR LTHEEGLSVR EIAERLKIGK SSVSTYLLRS REAGLSWPLP 70 80 90 100 110 120 IGADEDAKLE RRLFGRAGRP PRDLSEPDWA LVVRELKRKG VTLTLLWQEY RASHPDGYGF 130 140 150 160 170 180 TWFCEQVAAF RQRTSVAFRN RHAAGAVMQT DYAGPTVPVI DPATGVIHPA QIFVAVLGAS 190 200 210 220 230 240 NLTFAHASFS QQLPDWIDGQ VRALTFYGGV TKAIVCDNLK SGVAKALWFE PTLTATFAAM 250 260 270 280 290 300 AEHYDTTILP TRSRKPRDKG RVEGAVLIVE RWILARLRNR TFFSLAALNT AIAELLEDLN 310 320 330 340 350 360 NRTMRHVGKS RRELFEEIER PALKPLPAIP FEYAEWKSAK VHPDYHVEVD KTFYSVPHRL 370 380 390 400 410 420 IGCTLQVRLT HRVVEIFHDH QRVASHVRRS QRSGHVTVND HMPKAHQRYA NTTPANLIGR 430 440 450 460 470 480 ATQIGPNAAI LVERMMRDRP HPEQGYRSAM GILSLAPRYG SQRLEAACER ALTINAITYS 490 500 510 SVASILKSGL DRERPQAEHA APTPAHTNIR GRSYYQ

References

[1]

"Molecular basis of symbiosis between Rhizobium and legumes." Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X. Nature 387:394-401(1997) [PubMed: 9163424] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

[2]

"Rhizobium sp. strain NGR234 possesses a remarkable number of secretion systems." Schmeisser C., Liesegang H., Krysciak D., Bakkou N., Le Quere A., Wollherr A., Heinemeyer I., Morgenstern B., Pommerening-Roeser A., Flores M., Palacios R., Brenner S., Gottschalk G., Schmitz R.A., Broughton W.J., Perret X., Strittmatter A.W., Streit W.R. Appl. Environ. Microbiol. 75:4035-4045(2009) [PubMed: 19376903] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBLGenBankDDBJ	U00090 Genomic DNA. Translation: AAB91627.1. U00090 Genomic DNA. Translation: AAB91741.1. U00090 Genomic DNA. Translation: AAB91856.1.
RefSeq	NP_443789.1. NP_443939.1. NP_444069.1. YP_002822318.1. YP_002823144.1. YP_002823695.1. YP_002826747.1.
3D structure databases
ModBase	Search...
Genome annotation databases
GeneID	7788039. 7788674. 7789635. 7791510. 962187. 962348. 962452.
GenomeReviews	Gene locus NGR_a00180 in contig U00090_GR. Gene locus NGR_a01560 in contig U00090_GR. Gene locus NGR_a02860 in contig U00090_GR.
Organism-specific databases
CMR	Search...
Family and domain databases
InterPro	IPR009057. Homeodomain-like. IPR017895. HTH_IS408/IS1162_type. IPR001584. Integrase_cat-core. IPR013249. RNA_pol_sigma70_r4_t2. [Graphical view]
Pfam	PF00665. rve. 1 hit. PF08281. Sigma70_r4_2. 1 hit. [Graphical view]
PROSITE	PS50532. HTH_IS408. 1 hit. PS50994. INTEGRASE. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Y4BL_RHISN

Accession

Primary (citable) accession number: P55379

Entry history

Integrated into UniProtKB/Swiss-Prot:	November 1, 1997
Last sequence update:	November 1, 1997
Last modified:	November 24, 2009
This is version 46 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)