Reviewed, UniProtKB/Swiss-Prot P55377 (Y4BJ_RHISN)

Names and origin

Protein names

Recommended name:
    Uncharacterized protein y4bJ

Gene names

Ordered Locus Names:	NGR_a00200
ORF Names:	y4bJ

Encoded on

Plasmid sym pNGR234a

Organism

Rhizobium sp. (strain NGR234) [Complete proteome] [HAMAP]

Taxonomic identifier

394 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Rhizobiaceae › Rhizobium/Agrobacterium group › Rhizobium

Protein attributes

Sequence length	630 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Inferred from homology.

General annotation (Comments)

Subcellular location	Cell membrane; Multi-pass membrane protein Potential.
Sequence similarities	Belongs to the peptidase S1B family.

Ontologies

Keywords
Cellular component	Cell membrane Membrane
Domain	Transmembrane
Technical term	Complete proteome Plasmid
Gene Ontology (GO)
Biological process	proteolysis Inferred from electronic annotation. Source: InterPro
Cellular component	integral to membrane Inferred from electronic annotation. Source: UniProtKB-SubCell plasma membrane Inferred from electronic annotation. Source: UniProtKB-KW
Molecular function	serine-type endopeptidase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 630	630	Uncharacterized protein y4bJ		PRO_0000093869
Regions
	Transmembrane	8 – 28	21	Potential
	Transmembrane	258 – 278	21	Potential

Sequences

	Sequence		Length	Mass (Da)
	P55377-1 [UniParc]. Last modified November 1, 1997. Version 1. Checksum: 4C1FB7BA2EB44A02	FASTA	630	67,855
	10 20 30 40 50 60 MLSSRLGLFN MFRLLAAILV FTGLASAVNA DLLQTGGSRW VVLASTRDLD NAIGIANLYQ 70 80 90 100 110 120 HRFDDVRVAE ASNGWLAVIA GPVSIARGAK AAREELWSAG GFPPDLFLSN GQSLRRTVWE 130 140 150 160 170 180 PPKGRPIPTW SYKGGQPLVF SAGGLEIEVS HLAEGNTRYP SITLRRAGRL LIKEVLKGSE 190 200 210 220 230 240 SFGDNMNAEV RLVWLDRAVA EPQIIFSSHW NGAHCCTVSK ILTKVGNGWT SIEGATLDGG 250 260 270 280 290 300 GYRLQDIDGD GSVELLSVDN SFLYTFAPYV FSSAPLVISK LDGDRLIDMR WNSAFRRYYR 310 320 330 340 350 360 RELFGWEYRA KLEPEIWRKN GFLSAWLALK SVLGESDQAW TVVLENYDRS SEWPLTVCDA 370 380 390 400 410 420 PLKEGVCPEE ATREVSFPEA LRDHLARNGY LGPQVAKIEE TSKPTEQPSP ADSTSTPAAP 430 440 450 460 470 480 EKGAASSAGT GFFISKQGHL VTNHHVIKGC SAIEVRRPGQ LRLPANIVAV DPTNDLALLR 490 500 510 520 530 540 VESDTGAYAS VRVETRLGES VAVFGYPLSH VLASGGNFTL GNVTALAGLG NDTRFIQISA 550 560 570 580 590 600 PVQPGNSGGP LIDSYGNVIG VVTSKLDALA ALAVTGDIPQ NVNFALRGAS LYAFLLSYGI 610 620 630 SPVAGSNTQK LDAPELAERA SSFSVAVTCE

References

[1]

"Molecular basis of symbiosis between Rhizobium and legumes." Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X. Nature 387:394-401(1997) [PubMed: 9163424] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

[2]

"Rhizobium sp. strain NGR234 possesses a remarkable number of secretion systems." Schmeisser C., Liesegang H., Krysciak D., Bakkou N., Le Quere A., Wollherr A., Heinemeyer I., Morgenstern B., Pommerening-Roeser A., Flores M., Palacios R., Brenner S., Gottschalk G., Schmitz R.A., Broughton W.J., Perret X., Strittmatter A.W., Streit W.R. Appl. Environ. Microbiol. 75:4035-4045(2009) [PubMed: 19376903] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBLGenBankDDBJ	U00090 Genomic DNA. Translation: AAB91625.1.
RefSeq	NP_443787.1.
3D structure databases
ModBase	Search...
Genome annotation databases
GeneID	962317.
GenomeReviews	Gene locus NGR_a00200 in contig U00090_GR.
Organism-specific databases
CMR	Search...
Family and domain databases
InterPro	IPR001254. Peptidase_S1_S6. IPR001940. Peptidase_S1C. IPR009003. Ser/Cys_Pept_Trypsin-like. [Graphical view]
Pfam	PF00089. Trypsin. 1 hit. [Graphical view]
PRINTS	PR00834. PROTEASES2C.
ProtoNet	Search...

Entry information

Entry name

Y4BJ_RHISN

Accession

Primary (citable) accession number: P55377

Entry history

Integrated into UniProtKB/Swiss-Prot:	November 1, 1997
Last sequence update:	November 1, 1997
Last modified:	November 24, 2009
This is version 60 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)