P55373 (Y4BF_RHISN) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
Putative transposase y4bF

Gene names

Ordered Locus Names:	NGR_a00240
ORF Names:	y4bF

Encoded on

Plasmid sym pNGR234a

Organism

Rhizobium sp. (strain NGR234) [Complete proteome] [HAMAP]

Taxonomic identifier

394 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Rhizobiaceae › Sinorhizobium/Ensifer group › Sinorhizobium

Protein attributes

Sequence length	457 AA.
Sequence status	Complete.
Protein existence	Predicted

General annotation (Comments)

Sequence similarities

Contains 1 integrase catalytic domain.

Ontologies

Keywords
Biological process	DNA recombination Transposition
Ligand	DNA-binding
Technical term	Complete proteome Plasmid Transposable element
Gene Ontology (GO)
Biological process	DNA integration Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: UniProtKB-KW transposition Inferred from electronic annotation. Source: UniProtKB-KW
Molecular function	DNA binding Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 457	457	Putative transposase y4bF		PRO_0000075459
Regions
	Domain	128 – 313	186	Integrase catalytic

Sequences

	Sequence		Length	Mass (Da)
	P55373 [UniParc]. Last modified November 1, 1997. Version 1. Checksum: CBF8BFF7F0151FFC	FASTA	457	52,385
	10 20 30 40 50 60 MGLIAMSERD LQRIEVLSKV IDGRMTMVSA AHVLGLSTRQ VRRLLDRISA GGAASIRHKA 70 80 90 100 110 120 IGRPSNNRIC DGVRDYAMAI VRERYADFGP TLAAEKLAEL DGLTVSRETL RQWMADAGLW 130 140 150 160 170 180 LSRKQRRTFH QPRLRREAYG ELVQIDGSEH RWFEDRGDPC SLLVFIDDAT GKLMQLRFVR 190 200 210 220 230 240 SESAFTYFEA LELYLKAHGA PVAFYSDKHS VFRVAKKDAK GGQGMTQFGR ALCELNIEIL 250 260 270 280 290 300 CANSSQAKGR VERMNRTLQD RLIKDLRLEG ICGMDDGNAF LPRFMERYNR QFAITPARSD 310 320 330 340 350 360 DLHRPLNLAP DRLRDVLCKR EQRYVGAQLT FSFERQRIML EENEVTRGLV GRYVETHAYA 370 380 390 400 410 420 DGRLDVRWKG HSLPYRVFDK DQRVTHAAII ENKRLSDVLA YIKERQDERP APKVRTNSEK 430 440 450 NGYTPRGRKP GKRTDFMNDP VVIARRRQAL SNLDAAE

References

[1]

"Molecular basis of symbiosis between Rhizobium and legumes." Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X. Nature 387:394-401(1997) [PubMed: 9163424] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: NGR234.

[2]

"Rhizobium sp. strain NGR234 possesses a remarkable number of secretion systems." Schmeisser C., Liesegang H., Krysciak D., Bakkou N., Le Quere A., Wollherr A., Heinemeyer I., Morgenstern B., Pommerening-Roeser A., Flores M., Palacios R., Brenner S., Gottschalk G., Schmitz R.A., Broughton W.J., Perret X., Strittmatter A.W., Streit W.R. Appl. Environ. Microbiol. 75:4035-4045(2009) [PubMed: 19376903] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: NGR234.

Cross-references

Sequence databases
EMBL GenBank DDBJ	U00090 Genomic DNA. Translation: AAB91621.1.
RefSeq	NP_443783.1. NC_000914.2.
3D structure databases
ProteinModelPortal	P55373.
ModBase	Search...
Protein-protein interaction databases
STRING	P55373.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	962260.
GenomeReviews	Gene locus NGR_a00240 in contig U00090_GR.
KEGG	rhi:NGR_a00240.
PATRIC	32300767. VBIRhiSp122450_0019.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG457040.
OMA	HELNIQT.
ProtClustDB	CLSK782128.
Family and domain databases
InterPro	IPR009057. Homeodomain-like. IPR001584. Integrase_cat-core. IPR012337. RNaseH-like_dom. [Graphical view]
Pfam	PF00665. rve. 1 hit. [Graphical view]
SUPFAM	SSF46689. Homeodomain_like. 1 hit. SSF53098. RNaseH_fold. 1 hit.
PROSITE	PS50994. INTEGRASE. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Y4BF_RHISN

Accession

Primary (citable) accession number: P55373

Entry history

Integrated into UniProtKB/Swiss-Prot:	November 1, 1997
Last sequence update:	November 1, 1997
Last modified:	January 25, 2012
This is version 48 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program