Skip Header

Contribute Send feedback
Read comments (?) or add your own

P55360 (Y4AM_RHISN) Reviewed, UniProtKB/Swiss-Prot

Last modified January 25, 2012. Version 54. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Uncharacterized HTH-type transcriptional regulator y4aM
Gene names
Ordered Locus Names:NGR_a00350
ORF Names:y4aM
Encoded onPlasmid sym pNGR234a
OrganismRhizobium sp. (strain NGR234) [Complete proteome] [HAMAP]
Taxonomic identifier394 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium

Protein attributes

Sequence length143 AA.
Sequence statusComplete.
Protein existencePredicted

General annotation (Comments)

Sequence similarities

Contains 1 HTH cro/C1-type DNA-binding domain.

Ontologies

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 143143Uncharacterized HTH-type transcriptional regulator y4aM
PRO_0000149775

Regions

Domain24 – 7855HTH cro/C1-type
DNA binding35 – 5420H-T-H motif Potential

Sequences

Sequence LengthMass (Da)Tools
P55360 [UniParc].

Last modified November 1, 1997. Version 1.
Checksum: EF80D22C627438DA

FASTA14316,130
        10         20         30         40         50         60 
MLSVDPEKKR AKANAVDIYV GRRIRQRRRW QNMSQAALGE AIGVTFQQVQ KYEKGSNRVG 

        70         80         90        100        110        120 
AGRLQQISDA LEVHPSYFFE DMPDDTQSIG QGAPNQAYIP PEVIEFAASD EGVELIRAFS 

       130        140 
RVGNLNVRCR IVKLLKSLGE HDW 

« Hide

References

[1]"Molecular basis of symbiosis between Rhizobium and legumes."
Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X.
Nature 387:394-401(1997) [PubMed: 9163424] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NGR234.
[2]"Rhizobium sp. strain NGR234 possesses a remarkable number of secretion systems."
Schmeisser C., Liesegang H., Krysciak D., Bakkou N., Le Quere A., Wollherr A., Heinemeyer I., Morgenstern B., Pommerening-Roeser A., Flores M., Palacios R., Brenner S., Gottschalk G., Schmitz R.A., Broughton W.J., Perret X., Strittmatter A.W., Streit W.R.
Appl. Environ. Microbiol. 75:4035-4045(2009) [PubMed: 19376903] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NGR234.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
U00090 Genomic DNA. Translation: AAB91610.1.
RefSeqNP_443772.1. NC_000914.2.

3D structure databases

ProteinModelPortalP55360.
ModBaseSearch...

Protein-protein interaction databases

STRINGP55360.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID962181.
GenomeReviewsGene locus NGR_a00350 in contig U00090_GR.
KEGGrhi:NGR_a00350.
PATRIC32300795. VBIRhiSp122450_0033.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHBG730058.
OMAGANRISC.
ProtClustDBCLSK516071.

Family and domain databases

InterProIPR001387. HTH_3.
IPR010982. Lambda_DNA-bd.
[Graphical view]
Gene3DG3DSA:1.10.260.40. G3DSA:1.10.260.40. 1 hit.
PfamPF01381. HTH_3. 1 hit.
[Graphical view]
SMARTSM00530. HTH_XRE. 1 hit.
[Graphical view]
SUPFAMSSF47413. Lambda_like_DNA. 1 hit.
PROSITEPS50943. HTH_CROC1. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameY4AM_RHISN
AccessionPrimary (citable) accession number: P55360
Entry history
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: January 25, 2012
This is version 54 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

Rhizobium plasmid pNGR234a

Rhizobium plasmid pNGR234a: entries and gene names

SIMILARITY comments

Index of protein domains and families