P55360 (Y4AM_RHISN) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
Uncharacterized HTH-type transcriptional regulator y4aM

Gene names

Ordered Locus Names:	NGR_a00350
ORF Names:	y4aM

Encoded on

Plasmid sym pNGR234a

Organism

Rhizobium sp. (strain NGR234) [Complete proteome] [HAMAP]

Taxonomic identifier

394 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Rhizobiaceae › Sinorhizobium/Ensifer group › Sinorhizobium

Protein attributes

Sequence length	143 AA.
Sequence status	Complete.
Protein existence	Predicted

General annotation (Comments)

Sequence similarities

Contains 1 HTH cro/C1-type DNA-binding domain.

Ontologies

Keywords
Biological process	Transcription Transcription regulation
Ligand	DNA-binding
Technical term	Complete proteome Plasmid
Gene Ontology (GO)
Biological process	regulation of transcription, DNA-dependent Inferred from electronic annotation. Source: UniProtKB-KW transcription, DNA-dependent Inferred from electronic annotation. Source: UniProtKB-KW
Molecular function	sequence-specific DNA binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 143	143	Uncharacterized HTH-type transcriptional regulator y4aM		PRO_0000149775
Regions
	Domain	24 – 78	55	HTH cro/C1-type
	DNA binding	35 – 54	20	H-T-H motif Potential

Sequences

	Sequence		Length	Mass (Da)
	P55360 [UniParc]. Last modified November 1, 1997. Version 1. Checksum: EF80D22C627438DA	FASTA	143	16,130
	10 20 30 40 50 60 MLSVDPEKKR AKANAVDIYV GRRIRQRRRW QNMSQAALGE AIGVTFQQVQ KYEKGSNRVG 70 80 90 100 110 120 AGRLQQISDA LEVHPSYFFE DMPDDTQSIG QGAPNQAYIP PEVIEFAASD EGVELIRAFS 130 140 RVGNLNVRCR IVKLLKSLGE HDW

References

[1]

"Molecular basis of symbiosis between Rhizobium and legumes." Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X. Nature 387:394-401(1997) [PubMed: 9163424] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: NGR234.

[2]

"Rhizobium sp. strain NGR234 possesses a remarkable number of secretion systems." Schmeisser C., Liesegang H., Krysciak D., Bakkou N., Le Quere A., Wollherr A., Heinemeyer I., Morgenstern B., Pommerening-Roeser A., Flores M., Palacios R., Brenner S., Gottschalk G., Schmitz R.A., Broughton W.J., Perret X., Strittmatter A.W., Streit W.R. Appl. Environ. Microbiol. 75:4035-4045(2009) [PubMed: 19376903] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: NGR234.

Cross-references

Sequence databases
EMBL GenBank DDBJ	U00090 Genomic DNA. Translation: AAB91610.1.
RefSeq	NP_443772.1. NC_000914.2.
3D structure databases
ProteinModelPortal	P55360.
ModBase	Search...
Protein-protein interaction databases
STRING	P55360.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	962181.
GenomeReviews	Gene locus NGR_a00350 in contig U00090_GR.
KEGG	rhi:NGR_a00350.
PATRIC	32300795. VBIRhiSp122450_0033.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG730058.
OMA	GANRISC.
ProtClustDB	CLSK516071.
Family and domain databases
InterPro	IPR001387. HTH_3. IPR010982. Lambda_DNA-bd. [Graphical view]
Gene3D	G3DSA:1.10.260.40. G3DSA:1.10.260.40. 1 hit.
Pfam	PF01381. HTH_3. 1 hit. [Graphical view]
SMART	SM00530. HTH_XRE. 1 hit. [Graphical view]
SUPFAM	SSF47413. Lambda_like_DNA. 1 hit.
PROSITE	PS50943. HTH_CROC1. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Y4AM_RHISN

Accession

Primary (citable) accession number: P55360

Entry history

Integrated into UniProtKB/Swiss-Prot:	November 1, 1997
Last sequence update:	November 1, 1997
Last modified:	January 25, 2012
This is version 54 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program