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P55359 (NODD1_RHISN) Reviewed, UniProtKB/Swiss-Prot

Last modified May 14, 2014. Version 73. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Nodulation protein D 1
Gene names
Name:nodD1
Ordered Locus Names:NGR_a00360
ORF Names:y4aL
Encoded onPlasmid sym pNGR234a
OrganismRhizobium sp. (strain NGR234) [Complete proteome] [HAMAP]
Taxonomic identifier394 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium

Protein attributes

Sequence length322 AA.
Sequence statusComplete.
Protein existencePredicted

General annotation (Comments)

Function

Regulates the expression of the nod abcFE genes which encode other nodulation proteins. NodD is also a negative regulator of its own expression. Binds flavonoids as inducers.

Sequence similarities

Contains 1 HTH lysR-type DNA-binding domain.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 322322Nodulation protein D 1
PRO_0000105721

Regions

Domain6 – 6358HTH lysR-type
DNA binding23 – 4220H-T-H motif By similarity

Sequences

Sequence LengthMass (Da)Tools
P55359 [UniParc].

Last modified November 1, 1997. Version 1.
Checksum: 07D3BFA31983C233

FASTA32236,460
        10         20         30         40         50         60 
MRFKGLDLNL LVALDALMTE RKLTAAARSI NLSQPAMSAA ITRLRTYFRD ELFTMNGREL 

        70         80         90        100        110        120 
VPTPRAEALA PAVREALLHI HLSIISWDPF NPAQSDRSFR IILSDFMTLM FLERVVVRVA 

       130        140        150        160        170        180 
REAPAVSFEL LPFSDEPDEL LRRGDVDFLI LPEMFMSHTH PRAKLFDERF VCVSCPTNQK 

       190        200        210        220        230        240 
LPPQLSIDNY VSMGHVAAQF GKQRPSVEEW LLREHGLRRR VEVAVPGFTM IPSFLSGTDR 

       250        260        270        280        290        300 
IATLPLRLAM HFAKAIPLRI TELPQPIFPA FTEAVQWPAP HSSDPASLWM REIFLQEASR 

       310        320 
VEFQSETSAH ALSKADGAIR HP 

« Hide

References

[1]"Molecular basis of symbiosis between Rhizobium and legumes."
Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X.
Nature 387:394-401(1997) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NGR234.
[2]"Rhizobium sp. strain NGR234 possesses a remarkable number of secretion systems."
Schmeisser C., Liesegang H., Krysciak D., Bakkou N., Le Quere A., Wollherr A., Heinemeyer I., Morgenstern B., Pommerening-Roeser A., Flores M., Palacios R., Brenner S., Gottschalk G., Schmitz R.A., Broughton W.J., Perret X., Strittmatter A.W., Streit W.R.
Appl. Environ. Microbiol. 75:4035-4045(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NGR234.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
U00090 Genomic DNA. Translation: AAB91609.1.
RefSeqNP_443771.1. NC_000914.2.

3D structure databases

ProteinModelPortalP55359.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING394.NGR_a00360.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAB91609; AAB91609; NGR_a00360.
GeneID962176.
KEGGrhi:NGR_a00360.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0583.
HOGENOMHOG000103695.
KOK14657.
OMAVGCPTNE.
OrthoDBEOG6N0HGT.

Enzyme and pathway databases

BioCycSFRE394:GBYN-6087-MONOMER.

Family and domain databases

Gene3D1.10.10.10. 1 hit.
InterProIPR005119. LysR_subst-bd.
IPR000847. Tscrpt_reg_HTH_LysR.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamPF00126. HTH_1. 1 hit.
PF03466. LysR_substrate. 1 hit.
[Graphical view]
PRINTSPR00039. HTHLYSR.
PROSITEPS50931. HTH_LYSR. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameNODD1_RHISN
AccessionPrimary (citable) accession number: P55359
Entry history
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: May 14, 2014
This is version 73 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Rhizobium plasmid pNGR234a

Rhizobium plasmid pNGR234a: entries and gene names