Skip Header

 
Contribute Send feedback
Read comments (0) or add your own

Reviewed, UniProtKB/Swiss-Prot P55359 (NODD1_RHISN)

Last modified December 15, 2009. Version 42. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents

Names and origin

Protein namesRecommended name:
    Nodulation protein D 1
Gene names
Name: nodD1
Ordered Locus Names: NGR_a00360
ORF Names: y4aL
Encoded onPlasmid sym pNGR234a
OrganismRhizobium sp. (strain NGR234) [Complete proteome] [HAMAP]
Taxonomic identifier394 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeRhizobium/Agrobacterium groupRhizobium

Protein attributes

Sequence length322 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is not processed.
Protein existencePredicted.

General annotation (Comments)

Function

Regulates the expression of the nod abcFE genes which encode other nodulation proteins. NodD is also a negative regulator of its own expression. Binds flavonoids as inducers.

Sequence similarities

Contains 1 HTH lysR-type DNA-binding domain.

Ontologies

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 322322Nodulation protein D 1
PRO_0000105721

Regions

Domain6 – 6358HTH lysR-type
DNA binding23 – 4220H-T-H motif By similarity

Sequences

Sequence LengthMass (Da)Tools
P55359-1 [UniParc].

Last modified November 1, 1997. Version 1.
Checksum: 07D3BFA31983C233

FASTA32236,460
        10         20         30         40         50         60 
MRFKGLDLNL LVALDALMTE RKLTAAARSI NLSQPAMSAA ITRLRTYFRD ELFTMNGREL 

        70         80         90        100        110        120 
VPTPRAEALA PAVREALLHI HLSIISWDPF NPAQSDRSFR IILSDFMTLM FLERVVVRVA 

       130        140        150        160        170        180 
REAPAVSFEL LPFSDEPDEL LRRGDVDFLI LPEMFMSHTH PRAKLFDERF VCVSCPTNQK 

       190        200        210        220        230        240 
LPPQLSIDNY VSMGHVAAQF GKQRPSVEEW LLREHGLRRR VEVAVPGFTM IPSFLSGTDR 

       250        260        270        280        290        300 
IATLPLRLAM HFAKAIPLRI TELPQPIFPA FTEAVQWPAP HSSDPASLWM REIFLQEASR 

       310        320 
VEFQSETSAH ALSKADGAIR HP 

« Hide

References

[1]"Molecular basis of symbiosis between Rhizobium and legumes."
Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X.
Nature 387:394-401(1997) [PubMed: 9163424] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
[2]"Rhizobium sp. strain NGR234 possesses a remarkable number of secretion systems."
Schmeisser C., Liesegang H., Krysciak D., Bakkou N., Le Quere A., Wollherr A., Heinemeyer I., Morgenstern B., Pommerening-Roeser A., Flores M., Palacios R., Brenner S., Gottschalk G., Schmitz R.A., Broughton W.J., Perret X., Strittmatter A.W., Streit W.R.
Appl. Environ. Microbiol. 75:4035-4045(2009) [PubMed: 19376903] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases

U00090 Genomic DNA. Translation: AAB91609.1.
RefSeqNP_443771.1.

3D structure databases

ModBaseSearch...

Genome annotation databases

GeneID962176.
GenomeReviewsGene locus NGR_a00360 in contig U00090_GR.
KEGGrhi:NGR_a00360.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHBG682110.

Family and domain databases

InterProIPR000847. HTH_LysR.
IPR011991. Wing_hlx_DNA_bd.
[Graphical view]
Gene3DG3DSA:1.10.10.10. Wing_hlx_DNA_bd. 1 hit.
PfamPF00126. HTH_1. 1 hit.
[Graphical view]
PRINTSPR00039. HTHLYSR.
PROSITEPS50931. HTH_LYSR. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameNODD1_RHISN
AccessionPrimary (citable) accession number: P55359
Entry history
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: December 15, 2009
This is version 42 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation projectHAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)

Relevant documents

Rhizobium plasmid pNGR234a

Rhizobium plasmid pNGR234a: entries and gene names

SIMILARITY comments

Index of protein domains and families

Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents