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P55359

- NODD1_RHISN

UniProt

P55359 - NODD1_RHISN

Protein

Nodulation protein D 1

Gene

nodD1

Organism
Rhizobium sp. (strain NGR234)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 74 (01 Oct 2014)
      Sequence version 1 (01 Nov 1997)
      Previous versions | rss
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    Functioni

    Regulates the expression of the nod abcFE genes which encode other nodulation proteins. NodD is also a negative regulator of its own expression. Binds flavonoids as inducers.

    Regions

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    DNA bindingi23 – 4220H-T-H motifPROSITE-ProRule annotationAdd
    BLAST

    GO - Molecular functioni

    1. DNA binding Source: UniProtKB-KW
    2. sequence-specific DNA binding transcription factor activity Source: InterPro

    GO - Biological processi

    1. nodulation Source: UniProtKB-KW
    2. transcription, DNA-templated Source: UniProtKB-KW

    Keywords - Molecular functioni

    Activator, Repressor

    Keywords - Biological processi

    Nodulation, Transcription, Transcription regulation

    Keywords - Ligandi

    DNA-binding

    Enzyme and pathway databases

    BioCyciSFRE394:GBYN-6087-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Nodulation protein D 1
    Gene namesi
    Name:nodD1
    Ordered Locus Names:NGR_a00360
    ORF Names:y4aL
    Encoded oniPlasmid sym pNGR234a0 Publication
    OrganismiRhizobium sp. (strain NGR234)
    Taxonomic identifieri394 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
    ProteomesiUP000001054: Plasmid sym pNGR234a

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 322322Nodulation protein D 1PRO_0000105721Add
    BLAST

    Interactioni

    Protein-protein interaction databases

    STRINGi394.NGR_a00360.

    Structurei

    3D structure databases

    ProteinModelPortaliP55359.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Domaini6 – 6358HTH lysR-typePROSITE-ProRule annotationAdd
    BLAST

    Sequence similaritiesi

    Contains 1 HTH lysR-type DNA-binding domain.PROSITE-ProRule annotation

    Phylogenomic databases

    eggNOGiCOG0583.
    HOGENOMiHOG000103695.
    KOiK14657.
    OMAiVGCPTNE.
    OrthoDBiEOG6N0HGT.

    Family and domain databases

    Gene3Di1.10.10.10. 1 hit.
    InterProiIPR005119. LysR_subst-bd.
    IPR000847. Tscrpt_reg_HTH_LysR.
    IPR011991. WHTH_DNA-bd_dom.
    [Graphical view]
    PfamiPF00126. HTH_1. 1 hit.
    PF03466. LysR_substrate. 1 hit.
    [Graphical view]
    PRINTSiPR00039. HTHLYSR.
    PROSITEiPS50931. HTH_LYSR. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    P55359-1 [UniParc]FASTAAdd to Basket

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    MRFKGLDLNL LVALDALMTE RKLTAAARSI NLSQPAMSAA ITRLRTYFRD    50
    ELFTMNGREL VPTPRAEALA PAVREALLHI HLSIISWDPF NPAQSDRSFR 100
    IILSDFMTLM FLERVVVRVA REAPAVSFEL LPFSDEPDEL LRRGDVDFLI 150
    LPEMFMSHTH PRAKLFDERF VCVSCPTNQK LPPQLSIDNY VSMGHVAAQF 200
    GKQRPSVEEW LLREHGLRRR VEVAVPGFTM IPSFLSGTDR IATLPLRLAM 250
    HFAKAIPLRI TELPQPIFPA FTEAVQWPAP HSSDPASLWM REIFLQEASR 300
    VEFQSETSAH ALSKADGAIR HP 322
    Length:322
    Mass (Da):36,460
    Last modified:November 1, 1997 - v1
    Checksum:i07D3BFA31983C233
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    U00090 Genomic DNA. Translation: AAB91609.1.
    RefSeqiNP_443771.1. NC_000914.2.

    Genome annotation databases

    EnsemblBacteriaiAAB91609; AAB91609; NGR_a00360.
    GeneIDi962176.
    KEGGirhi:NGR_a00360.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    U00090 Genomic DNA. Translation: AAB91609.1 .
    RefSeqi NP_443771.1. NC_000914.2.

    3D structure databases

    ProteinModelPortali P55359.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 394.NGR_a00360.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAB91609 ; AAB91609 ; NGR_a00360 .
    GeneIDi 962176.
    KEGGi rhi:NGR_a00360.

    Phylogenomic databases

    eggNOGi COG0583.
    HOGENOMi HOG000103695.
    KOi K14657.
    OMAi VGCPTNE.
    OrthoDBi EOG6N0HGT.

    Enzyme and pathway databases

    BioCyci SFRE394:GBYN-6087-MONOMER.

    Family and domain databases

    Gene3Di 1.10.10.10. 1 hit.
    InterProi IPR005119. LysR_subst-bd.
    IPR000847. Tscrpt_reg_HTH_LysR.
    IPR011991. WHTH_DNA-bd_dom.
    [Graphical view ]
    Pfami PF00126. HTH_1. 1 hit.
    PF03466. LysR_substrate. 1 hit.
    [Graphical view ]
    PRINTSi PR00039. HTHLYSR.
    PROSITEi PS50931. HTH_LYSR. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Molecular basis of symbiosis between Rhizobium and legumes."
      Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X.
      Nature 387:394-401(1997) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: NGR234.
    2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: NGR234.

    Entry informationi

    Entry nameiNODD1_RHISN
    AccessioniPrimary (citable) accession number: P55359
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: November 1, 1997
    Last sequence update: November 1, 1997
    Last modified: October 1, 2014
    This is version 74 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Plasmid, Reference proteome

    Documents

    1. Rhizobium plasmid pNGR234a
      Rhizobium plasmid pNGR234a: entries and gene names
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3