P55359 (NODD1_RHISN) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
Nodulation protein D 1

Gene names

Name:	nodD1
Ordered Locus Names:	NGR_a00360
ORF Names:	y4aL

Encoded on

Plasmid sym pNGR234a

Organism

Rhizobium sp. (strain NGR234) [Complete proteome] [HAMAP]

Taxonomic identifier

394 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Rhizobiaceae › Sinorhizobium/Ensifer group › Sinorhizobium

Protein attributes

Sequence length	322 AA.
Sequence status	Complete.
Protein existence	Predicted

General annotation (Comments)

Function	Regulates the expression of the nod abcFE genes which encode other nodulation proteins. NodD is also a negative regulator of its own expression. Binds flavonoids as inducers.
Sequence similarities	Contains 1 HTH lysR-type DNA-binding domain.

Ontologies

Keywords
Biological process	Nodulation Transcription Transcription regulation
Ligand	DNA-binding
Molecular function	Activator Repressor
Technical term	Complete proteome Plasmid
Gene Ontology (GO)
Biological process	nodulation Inferred from electronic annotation. Source: UniProtKB-KW transcription, DNA-dependent Inferred from electronic annotation. Source: UniProtKB-KW
Molecular function	DNA binding Inferred from electronic annotation. Source: UniProtKB-KW sequence-specific DNA binding transcription factor activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 322	322	Nodulation protein D 1		PRO_0000105721
Regions
	Domain	6 – 63	58	HTH lysR-type
	DNA binding	23 – 42	20	H-T-H motif By similarity

Sequences

	Sequence		Length	Mass (Da)
	P55359 [UniParc]. Last modified November 1, 1997. Version 1. Checksum: 07D3BFA31983C233	FASTA	322	36,460
	10 20 30 40 50 60 MRFKGLDLNL LVALDALMTE RKLTAAARSI NLSQPAMSAA ITRLRTYFRD ELFTMNGREL 70 80 90 100 110 120 VPTPRAEALA PAVREALLHI HLSIISWDPF NPAQSDRSFR IILSDFMTLM FLERVVVRVA 130 140 150 160 170 180 REAPAVSFEL LPFSDEPDEL LRRGDVDFLI LPEMFMSHTH PRAKLFDERF VCVSCPTNQK 190 200 210 220 230 240 LPPQLSIDNY VSMGHVAAQF GKQRPSVEEW LLREHGLRRR VEVAVPGFTM IPSFLSGTDR 250 260 270 280 290 300 IATLPLRLAM HFAKAIPLRI TELPQPIFPA FTEAVQWPAP HSSDPASLWM REIFLQEASR 310 320 VEFQSETSAH ALSKADGAIR HP

References

[1]

"Molecular basis of symbiosis between Rhizobium and legumes." Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X. Nature 387:394-401(1997) [PubMed: 9163424] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: NGR234.

[2]

"Rhizobium sp. strain NGR234 possesses a remarkable number of secretion systems." Schmeisser C., Liesegang H., Krysciak D., Bakkou N., Le Quere A., Wollherr A., Heinemeyer I., Morgenstern B., Pommerening-Roeser A., Flores M., Palacios R., Brenner S., Gottschalk G., Schmitz R.A., Broughton W.J., Perret X., Strittmatter A.W., Streit W.R. Appl. Environ. Microbiol. 75:4035-4045(2009) [PubMed: 19376903] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: NGR234.

Cross-references

Sequence databases
EMBL GenBank DDBJ	U00090 Genomic DNA. Translation: AAB91609.1.
RefSeq	NP_443771.1. NC_000914.2.
3D structure databases
ProteinModelPortal	P55359.
ModBase	Search...
Protein-protein interaction databases
STRING	P55359.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	962176.
GenomeReviews	Gene locus NGR_a00360 in contig U00090_GR.
KEGG	rhi:NGR_a00360.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG682110.
OMA	WPALHNT.
ProtClustDB	CLSK864448.
Family and domain databases
InterPro	IPR005119. LysR_subst-bd. IPR000847. Tscrpt_reg_HTH_LysR. IPR011991. WHTH_trsnscrt_rep_DNA-bd. [Graphical view]
Gene3D	G3DSA:1.10.10.10. Wing_hlx_DNA_bd. 1 hit.
KO	K14657.
Pfam	PF00126. HTH_1. 1 hit. PF03466. LysR_substrate. 1 hit. [Graphical view]
PRINTS	PR00039. HTHLYSR.
PROSITE	PS50931. HTH_LYSR. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

NODD1_RHISN

Accession

Primary (citable) accession number: P55359

Entry history

Integrated into UniProtKB/Swiss-Prot:	November 1, 1997
Last sequence update:	November 1, 1997
Last modified:	December 14, 2011
This is version 60 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program