Skip Header

You are using a version of Internet Explorer that may not display all features of this website. Please upgrade to a modern browser.
Contribute Send feedback
Read comments (?) or add your own

P55351 (Y4AD_RHISN) Reviewed, UniProtKB/Swiss-Prot

Last modified May 14, 2014. Version 68. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Uncharacterized protein y4aD
Gene names
Ordered Locus Names:NGR_a00430
ORF Names:y4aD
Encoded onPlasmid sym pNGR234a
OrganismRhizobium sp. (strain NGR234) [Complete proteome] [HAMAP]
Taxonomic identifier394 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium

Protein attributes

Sequence length292 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Probably part of the operon y4aABCD involved in the synthesis of an isoprenoid compound.

Sequence similarities

Belongs to the phytoene/squalene synthase family.

Ontologies

Keywords
   Biological processIsoprene biosynthesis
   Technical termComplete proteome
Plasmid
Gene Ontology (GO)
   Biological_processisoprenoid biosynthetic process

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular_functiontransferase activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 292292Uncharacterized protein y4aD
PRO_0000200798

Sequences

Sequence LengthMass (Da)Tools
P55351 [UniParc].

Last modified November 1, 1997. Version 1.
Checksum: 1055E5E7F3614379

FASTA29232,540
        10         20         30         40         50         60 
MTSGSGPRSD AMHREKNFPV ASWIIHPRHR ALILAFYRFV RMADDIADHA TLAPDEKLLY 

        70         80         90        100        110        120 
LDLLEAELLG KGETRAEAVH LRTALDRRGM PPRHALDLLT AFRMDVTKQR YENWDEVIDY 

       130        140        150        160        170        180 
CRYSAMPVGR FVLDVHGESA ATWPASDVLC AGLQVCNHLQ DCGKDFLNLN RVYIPRDALS 

       190        200        210        220        230        240 
ASGASIEELG AAKSSLQMLQ CLRSLAAKAE VLLNGGGALV SQVKDFRLRF EVSVILSFAD 

       250        260        270        280        290 
KIVSMLKMRD PLRERVHLSP LELLLHGVGA MANEAARRAF GRGTRFKTTV DV 

« Hide

References

[1]"Molecular basis of symbiosis between Rhizobium and legumes."
Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X.
Nature 387:394-401(1997) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NGR234.
[2]"Rhizobium sp. strain NGR234 possesses a remarkable number of secretion systems."
Schmeisser C., Liesegang H., Krysciak D., Bakkou N., Le Quere A., Wollherr A., Heinemeyer I., Morgenstern B., Pommerening-Roeser A., Flores M., Palacios R., Brenner S., Gottschalk G., Schmitz R.A., Broughton W.J., Perret X., Strittmatter A.W., Streit W.R.
Appl. Environ. Microbiol. 75:4035-4045(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NGR234.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
U00090 Genomic DNA. Translation: AAB91602.1.
RefSeqNP_443764.1. NC_000914.2.

3D structure databases

ProteinModelPortalP55351.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING394.NGR_a00430.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAB91602; AAB91602; NGR_a00430.
GeneID962253.
KEGGrhi:NGR_a00430.
PATRIC32300809. VBIRhiSp122450_0040.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1562.
HOGENOMHOG000003801.
OMAYENWDEV.
OrthoDBEOG63FW00.

Enzyme and pathway databases

BioCycSFRE394:GBYN-6094-MONOMER.

Family and domain databases

Gene3D1.10.600.10. 1 hit.
InterProIPR002060. Squ/phyt_synthse.
IPR017827. Squalene_synthase_HpnC.
IPR008949. Terpenoid_synth.
[Graphical view]
PfamPF00494. SQS_PSY. 1 hit.
[Graphical view]
SUPFAMSSF48576. SSF48576. 1 hit.
TIGRFAMsTIGR03464. HpnC. 1 hit.
ProtoNetSearch...

Entry information

Entry nameY4AD_RHISN
AccessionPrimary (citable) accession number: P55351
Entry history
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: May 14, 2014
This is version 68 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Rhizobium plasmid pNGR234a

Rhizobium plasmid pNGR234a: entries and gene names