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P55215

- CASP2_RAT

UniProt

P55215 - CASP2_RAT

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Protein
Caspase-2
Gene
Casp2, Ich1
Organism
Rattus norvegicus (Rat)
Status
Reviewed - Annotation score: 5 out of 5 - Experimental evidence at transcript leveli

Functioni

Involved in the activation cascade of caspases responsible for apoptosis execution. Might function by either activating some proteins required for cell death or inactivating proteins necessary for cell survival By similarity.

Catalytic activityi

Strict requirement for an Asp residue at P1, with 316-asp being essential for proteolytic activity and has a preferred cleavage sequence of Val-Asp-Val-Ala-Asp-|-.

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei277 – 2771 By similarity
Active sitei320 – 3201 By similarity

GO - Molecular functioni

  1. cysteine-type endopeptidase activity Source: RefGenome
  2. cysteine-type endopeptidase activity involved in apoptotic process Source: Ensembl

GO - Biological processi

  1. DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest Source: Ensembl
  2. aging Source: RGD
  3. apoptotic process Source: RGD
  4. brain development Source: RGD
  5. cellular response to mechanical stimulus Source: Ensembl
  6. ectopic germ cell programmed cell death Source: Ensembl
  7. extrinsic apoptotic signaling pathway in absence of ligand Source: RefGenome
  8. intrinsic apoptotic signaling pathway in response to DNA damage Source: RefGenome
  9. luteolysis Source: RGD
  10. neural retina development Source: RGD
  11. positive regulation of apoptotic signaling pathway Source: Ensembl
  12. positive regulation of neuron apoptotic process Source: RGD
  13. programmed cell death Source: RGD
  14. protein processing Source: Ensembl
  15. proteolysis Source: RGD
Complete GO annotation...

Keywords - Molecular functioni

Hydrolase, Protease, Thiol protease

Keywords - Biological processi

Apoptosis

Enzyme and pathway databases

BRENDAi3.4.22.55. 5301.

Protein family/group databases

MEROPSiC14.006.

Names & Taxonomyi

Protein namesi
Recommended name:
Caspase-2 (EC:3.4.22.55)
Short name:
CASP-2
Alternative name(s):
Protease ICH-1
Cleaved into the following 3 chains:
Gene namesi
Name:Casp2
Synonyms:Ich1
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
ProteomesiUP000002494: Chromosome 4

Organism-specific databases

RGDi69274. Casp2.

Subcellular locationi

GO - Cellular componenti

  1. membrane Source: RGD
  2. mitochondrion Source: RGD
  3. nucleus Source: Ensembl
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Initiator methioninei1 – 11Removed By similarity
Propeptidei2 – 169168
PRO_0000043403Add
BLAST
Chaini170 – 325156Caspase-2 subunit p18 By similarity
PRO_0000044573Add
BLAST
Propeptidei326 – 3338
PRO_0000044574
Chaini334 – 452119Caspase-2 subunit p13 By similarity
PRO_0000004551Add
BLAST
Chaini348 – 452105Caspase-2 subunit p12 By similarity
PRO_0000004552Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei2 – 21N-acetylalanine By similarity
Modified residuei340 – 3401Phosphoserine By similarity

Post-translational modificationi

The mature protease can process its own propeptide, but not that of other caspases By similarity.

Keywords - PTMi

Acetylation, Phosphoprotein, Zymogen

Proteomic databases

PaxDbiP55215.

PTM databases

PhosphoSiteiP55215.

Expressioni

Gene expression databases

ArrayExpressiP55215.
GenevestigatoriP55215.

Interactioni

Subunit structurei

Heterotetramer that consists of two anti-parallel arranged heterodimers, each one formed by a p18 subunit and a p12 subunit. Interacts with LRDD By similarity.

Protein-protein interaction databases

DIPiDIP-48602N.
STRINGi10116.ENSRNOP00000022672.

Structurei

3D structure databases

ProteinModelPortaliP55215.
SMRiP55215. Positions 173-333, 355-452.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini32 – 12190CARD
Add
BLAST

Sequence similaritiesi

Belongs to the peptidase C14A family.
Contains 1 CARD domain.

Phylogenomic databases

eggNOGiNOG305976.
GeneTreeiENSGT00700000104134.
HOGENOMiHOG000290714.
HOVERGENiHBG103962.
InParanoidiP55215.
KOiK02186.
OMAiPCLQVKP.
OrthoDBiEOG7TTQ7K.
PhylomeDBiP55215.
TreeFamiTF102023.

Family and domain databases

Gene3Di1.10.533.10. 1 hit.
3.40.50.1460. 1 hit.
InterProiIPR001315. CARD.
IPR029030. Caspase-like_dom.
IPR017350. Caspase_ICE-type.
IPR011029. DEATH-like_dom.
IPR011600. Pept_C14_caspase.
IPR001309. Pept_C14_ICE_p20.
IPR016129. Pept_C14_ICE_p20_AS.
IPR002138. Pept_C14_p10.
IPR015917. Pept_C14A_p45_core.
[Graphical view]
PfamiPF00619. CARD. 1 hit.
PF00656. Peptidase_C14. 1 hit.
[Graphical view]
PIRSFiPIRSF038001. Caspase_ICE. 1 hit.
PRINTSiPR00376. IL1BCENZYME.
SMARTiSM00114. CARD. 1 hit.
SM00115. CASc. 1 hit.
[Graphical view]
SUPFAMiSSF47986. SSF47986. 1 hit.
PROSITEiPS50209. CARD. 1 hit.
PS01122. CASPASE_CYS. 1 hit.
PS01121. CASPASE_HIS. 1 hit.
PS50207. CASPASE_P10. 1 hit.
PS50208. CASPASE_P20. 1 hit.
[Graphical view]

Sequences (2)i

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

This entry describes 2 isoformsi produced by alternative splicing. Align

Isoform 1 (identifier: P55215-1) [UniParc]FASTAAdd to Basket

Also known as: caspase-2L

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

MAASSGRSQS SLHRKGLMAA DRRSRILAVC GMHPDHQETL KKNRVVLAKQ    50
LLLSELLEHL LEKDIITLEM RELIQAKGGS FSQNVELLNL LPKRGPQAFD 100
AFCEALRETR QGHLEDLLLT TLSDIQHILP PLSCDYDSSL PFSVCESCPP 150
HKQSRLSTDT MEHSLDNGDG PPCLQVKPCT PEFYQAHYQL AYRLQSQPRG 200
LALVMSNVHF TGEKDLEFRS GGDVDHTTLV TLFKLLGYNV HVLYDQTAQE 250
MQEKLQNFAQ LPAHRVTDSC IVALLSHGVE GGIYGVDGKL LQLQEVFRLF 300
DNANCPSLQN KPKMFFIQAC RGDETDRGVD QQDGKNHAQS PGCEESDAGK 350
EELMKMRLPT RSDMICGYAC LKGNAAMRNT KRGSWYIEAL TQVFSERACD 400
MHVADMLVKV NALIKEREGY APGTEFHRCK EMSEYCSTLC QQLYLFPGYP 450
PT 452
Length:452
Mass (Da):50,728
Last modified:December 6, 2005 - v3
Checksum:i03F9D096BB741CE3
GO
Isoform 2 (identifier: P55215-2) [UniParc]FASTAAdd to Basket

Also known as: caspase-2S

The sequence of this isoform differs from the canonical sequence as follows:
     323-343: DETDRGVDQQDGKNHAQSPGC → GAIGSLGPLLLFTAATASLAL
     344-452: Missing.

Show »
Length:343
Mass (Da):38,004
Checksum:i0292D6130C63F641
GO

Sequence cautioni

The sequence AAB82567.1 differs from that shown. Reason: Frameshift at positions 137 and 189.

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei323 – 34321DETDR…QSPGC → GAIGSLGPLLLFTAATASLA L in isoform 2.
VSP_016555Add
BLAST
Alternative sequencei344 – 452109Missing in isoform 2.
VSP_016556Add
BLAST

Sequence conflict

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti145 – 1451C → Y in AAB82567. 1 Publication
Sequence conflicti166 – 1661D → H in AAB82567. 1 Publication
Sequence conflicti177 – 1771K → E in AAB82567. 1 Publication
Sequence conflicti197 – 1971Q → R in AAB82567. 1 Publication
Sequence conflicti340 – 3401S → P in AAC52260. 1 Publication
Sequence conflicti348 – 3492AG → TV in AAC52260. 1 Publication
Sequence conflicti367 – 3671G → V in AAC52260. 1 Publication
Sequence conflicti373 – 3731G → D in AAC52260. 1 Publication
Sequence conflicti376 – 3772AM → PI in AAC52260. 1 Publication

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
U77933 mRNA. Translation: AAB96379.1.
AF136231 mRNA. Translation: AAD33684.1.
AF136232 mRNA. Translation: AAD33685.1.
AF025671 mRNA. Translation: AAB82567.1. Frameshift.
U34684 mRNA. Translation: AAC52260.1.
PIRiI67436.
JC6507.
RefSeqiNP_071967.2. NM_022522.2. [P55215-1]
UniGeneiRn.1438.

Genome annotation databases

EnsembliENSRNOT00000022672; ENSRNOP00000022672; ENSRNOG00000016707. [P55215-1]
GeneIDi64314.
KEGGirno:64314.
UCSCiRGD:69274. rat. [P55215-1]

Keywords - Coding sequence diversityi

Alternative splicing

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
U77933 mRNA. Translation: AAB96379.1 .
AF136231 mRNA. Translation: AAD33684.1 .
AF136232 mRNA. Translation: AAD33685.1 .
AF025671 mRNA. Translation: AAB82567.1 . Frameshift.
U34684 mRNA. Translation: AAC52260.1 .
PIRi I67436.
JC6507.
RefSeqi NP_071967.2. NM_022522.2. [P55215-1 ]
UniGenei Rn.1438.

3D structure databases

ProteinModelPortali P55215.
SMRi P55215. Positions 173-333, 355-452.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

DIPi DIP-48602N.
STRINGi 10116.ENSRNOP00000022672.

Protein family/group databases

MEROPSi C14.006.

PTM databases

PhosphoSitei P55215.

Proteomic databases

PaxDbi P55215.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSRNOT00000022672 ; ENSRNOP00000022672 ; ENSRNOG00000016707 . [P55215-1 ]
GeneIDi 64314.
KEGGi rno:64314.
UCSCi RGD:69274. rat. [P55215-1 ]

Organism-specific databases

CTDi 835.
RGDi 69274. Casp2.

Phylogenomic databases

eggNOGi NOG305976.
GeneTreei ENSGT00700000104134.
HOGENOMi HOG000290714.
HOVERGENi HBG103962.
InParanoidi P55215.
KOi K02186.
OMAi PCLQVKP.
OrthoDBi EOG7TTQ7K.
PhylomeDBi P55215.
TreeFami TF102023.

Enzyme and pathway databases

BRENDAi 3.4.22.55. 5301.

Miscellaneous databases

NextBioi 612988.
PROi P55215.

Gene expression databases

ArrayExpressi P55215.
Genevestigatori P55215.

Family and domain databases

Gene3Di 1.10.533.10. 1 hit.
3.40.50.1460. 1 hit.
InterProi IPR001315. CARD.
IPR029030. Caspase-like_dom.
IPR017350. Caspase_ICE-type.
IPR011029. DEATH-like_dom.
IPR011600. Pept_C14_caspase.
IPR001309. Pept_C14_ICE_p20.
IPR016129. Pept_C14_ICE_p20_AS.
IPR002138. Pept_C14_p10.
IPR015917. Pept_C14A_p45_core.
[Graphical view ]
Pfami PF00619. CARD. 1 hit.
PF00656. Peptidase_C14. 1 hit.
[Graphical view ]
PIRSFi PIRSF038001. Caspase_ICE. 1 hit.
PRINTSi PR00376. IL1BCENZYME.
SMARTi SM00114. CARD. 1 hit.
SM00115. CASc. 1 hit.
[Graphical view ]
SUPFAMi SSF47986. SSF47986. 1 hit.
PROSITEi PS50209. CARD. 1 hit.
PS01122. CASPASE_CYS. 1 hit.
PS01121. CASPASE_HIS. 1 hit.
PS50207. CASPASE_P10. 1 hit.
PS50208. CASPASE_P20. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Cloning and expression of the cDNA encoding rat caspase-2."
    Sato N., Milligan C.E., Uchiyama Y., Oppenheim R.W.
    Gene 202:127-132(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1).
  2. "Two caspase-2 transcripts are expressed in rat hippocampus after global cerebral ischemia."
    Jin K., Nagayama T., Mao X., Kawaguchi K., Hickey R.W., Greenberg D.A., Simon R.P., Graham S.H.
    J. Neurochem. 81:25-35(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS 1 AND 2).
    Strain: Sprague-Dawley.
    Tissue: Brain.
  3. "Identification of gene family of caspases in rat kidney and altered expression in ischemia-reperfusion injury."
    Kaushal G.P., Singh A.B., Shah S.V.
    Am. J. Physiol. 274:F587-F595(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 67-324.
    Strain: Sprague-Dawley.
    Tissue: Kidney cortex.
  4. "Interleukin-1 beta-converting enzyme-related proteases (IRPs) and mammalian cell death: dissociation of IRP-induced oligonucleosomal endonuclease activity from morphological apoptosis in granulosa cells of the ovarian follicle."
    Flaws J.A., Kugu K., Trbovich A.M., Desanti A., Tilly K.I., Hirshfield A.N., Tilly J.L.
    Endocrinology 136:5042-5053(1995) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 198-379.
    Tissue: Ovary.

Entry informationi

Entry nameiCASP2_RAT
AccessioniPrimary (citable) accession number: P55215
Secondary accession number(s): O35398, O55194, Q9WUI6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 1, 1996
Last sequence update: December 6, 2005
Last modified: September 3, 2014
This is version 127 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Peptidase families
    Classification of peptidase families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi