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Protein

UPF0603 protein YgcG

Gene

ygcG

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:G7444-MONOMER.
ECOL316407:JW5445-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0603 protein YgcG
Gene namesi
Name:ygcG
Ordered Locus Names:b2778, JW5445
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13035. ygcG.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei175 – 19521HelicalSequence analysisAdd
BLAST
Transmembranei206 – 22621HelicalSequence analysisAdd
BLAST
Transmembranei228 – 24821HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 1616Sequence analysisAdd
BLAST
Chaini17 – 290274UPF0603 protein YgcGPRO_0000169320Add
BLAST

Proteomic databases

PaxDbiP55140.
PRIDEiP55140.

Interactioni

Protein-protein interaction databases

BioGridi4262296. 8 interactions.
DIPiDIP-12123N.
IntActiP55140. 1 interaction.
MINTiMINT-1304861.
STRINGi511145.b2778.

Structurei

3D structure databases

ProteinModelPortaliP55140.
SMRiP55140. Positions 18-154.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi178 – 24366Phe-richAdd
BLAST
Compositional biasi264 – 28825Gly-richAdd
BLAST

Sequence similaritiesi

Belongs to the UPF0603 family.Curated

Keywords - Domaini

Signal, Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4105HA9. Bacteria.
COG1512. LUCA.
HOGENOMiHOG000009544.
InParanoidiP55140.
KOiK06872.
OMAiGWIMALF.
PhylomeDBiP55140.

Family and domain databases

InterProiIPR007621. TPM_dom.
[Graphical view]
PfamiPF04536. TPM_phosphatase. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P55140-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRYFILMFTF VCSFVAAQPT IVPQLQQQVT DLTSSLNSQE KKELTHKLES
60 70 80 90 100
IFNNTQVQIA VLIVPTTKDE TIEQYATRVF DNWRLGDAKR NDGILIVVAW
110 120 130 140 150
SDRTVRIQVG YGLEEKVTDA LAGDIIRSNM IPAFKQQKLA KGLELAINAL
160 170 180 190 200
NNQLTSQHQY PTNPSESESA SSSDHYYFAI FWVFAVMFFP FWFFHQGSNF
210 220 230 240 250
CRACKSGVCI SAIYLLDLFL FSDKIFSIAV FSFFFTFTIF MVFTCLCVLQ
260 270 280 290
KRASGRSYHS DNSGSAGGSD SGGFSGGGGS SGGGGASGRW
Length:290
Mass (Da):32,206
Last modified:December 4, 2007 - v2
Checksum:iC754BF10A6032BA6
GO

Sequence cautioni

The sequence AAA69288 differs from that shown. Reason: Erroneous initiation. Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U29580 Genomic DNA. Translation: AAA69288.1. Different initiation.
U00096 Genomic DNA. Translation: AAC75820.2.
AP009048 Genomic DNA. Translation: BAE76852.1.
PIRiF65059.
RefSeqiNP_417258.4. NC_000913.3.
WP_001268460.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC75820; AAC75820; b2778.
BAE76852; BAE76852; BAE76852.
GeneIDi945247.
KEGGiecj:JW5445.
eco:b2778.
PATRICi32120972. VBIEscCol129921_2878.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U29580 Genomic DNA. Translation: AAA69288.1. Different initiation.
U00096 Genomic DNA. Translation: AAC75820.2.
AP009048 Genomic DNA. Translation: BAE76852.1.
PIRiF65059.
RefSeqiNP_417258.4. NC_000913.3.
WP_001268460.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP55140.
SMRiP55140. Positions 18-154.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4262296. 8 interactions.
DIPiDIP-12123N.
IntActiP55140. 1 interaction.
MINTiMINT-1304861.
STRINGi511145.b2778.

Proteomic databases

PaxDbiP55140.
PRIDEiP55140.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC75820; AAC75820; b2778.
BAE76852; BAE76852; BAE76852.
GeneIDi945247.
KEGGiecj:JW5445.
eco:b2778.
PATRICi32120972. VBIEscCol129921_2878.

Organism-specific databases

EchoBASEiEB2850.
EcoGeneiEG13035. ygcG.

Phylogenomic databases

eggNOGiENOG4105HA9. Bacteria.
COG1512. LUCA.
HOGENOMiHOG000009544.
InParanoidiP55140.
KOiK06872.
OMAiGWIMALF.
PhylomeDBiP55140.

Enzyme and pathway databases

BioCyciEcoCyc:G7444-MONOMER.
ECOL316407:JW5445-MONOMER.

Miscellaneous databases

PROiP55140.

Family and domain databases

InterProiIPR007621. TPM_dom.
[Graphical view]
PfamiPF04536. TPM_phosphatase. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYGCG_ECOLI
AccessioniPrimary (citable) accession number: P55140
Secondary accession number(s): Q2MA54
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 1, 1996
Last sequence update: December 4, 2007
Last modified: September 7, 2016
This is version 117 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families
  3. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.