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Protein

Uncharacterized hydrolase YxeP

Gene

yxeP

Organism
Bacillus subtilis (strain 168)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

Hydrolase

Enzyme and pathway databases

BioCyciBSUB:BSU39470-MONOMER.

Protein family/group databases

MEROPSiM20.015.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized hydrolase YxeP (EC:3.-.-.-)
Gene namesi
Name:yxeP
Ordered Locus Names:BSU39470
ORF Names:LP9H
OrganismiBacillus subtilis (strain 168)
Taxonomic identifieri224308 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
Proteomesi
  • UP000001570 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 380380Uncharacterized hydrolase YxePPRO_0000061962Add
BLAST

Proteomic databases

PaxDbiP54955.

Interactioni

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100021296.

Structurei

Secondary structure

1
380
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi4 – 1916Combined sources
Helixi28 – 4013Combined sources
Beta strandi55 – 606Combined sources
Beta strandi67 – 737Combined sources
Helixi100 – 11516Combined sources
Helixi118 – 1203Combined sources
Beta strandi122 – 13110Combined sources
Turni133 – 1364Combined sources
Helixi138 – 1447Combined sources
Turni145 – 1506Combined sources
Beta strandi151 – 16010Combined sources
Beta strandi167 – 1704Combined sources
Beta strandi172 – 1765Combined sources
Beta strandi179 – 1879Combined sources
Helixi202 – 21312Combined sources
Beta strandi228 – 2369Combined sources
Beta strandi240 – 2423Combined sources
Beta strandi245 – 25410Combined sources
Helixi258 – 27821Combined sources
Beta strandi282 – 29110Combined sources
Beta strandi294 – 2963Combined sources
Helixi298 – 3003Combined sources
Helixi301 – 31010Combined sources
Beta strandi314 – 3174Combined sources
Beta strandi321 – 3233Combined sources
Helixi327 – 3315Combined sources
Beta strandi336 – 3427Combined sources
Helixi360 – 37819Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1YSJX-ray2.40A/B1-380[»]
ProteinModelPortaliP54955.
SMRiP54955. Positions 2-379.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP54955.

Family & Domainsi

Sequence similaritiesi

Belongs to the peptidase M20 family.Curated

Phylogenomic databases

eggNOGiENOG4105CH2. Bacteria.
COG1473. LUCA.
HOGENOMiHOG000241404.
InParanoidiP54955.
KOiK01436.
OMAiGLHNAPE.
OrthoDBiEOG6B09WM.
PhylomeDBiP54955.

Family and domain databases

Gene3Di3.30.70.360. 1 hit.
InterProiIPR017439. Amidohydrolase.
IPR002933. Peptidase_M20.
IPR011650. Peptidase_M20_dimer.
[Graphical view]
PfamiPF07687. M20_dimer. 1 hit.
PF01546. Peptidase_M20. 1 hit.
[Graphical view]
PIRSFiPIRSF005962. Pept_M20D_amidohydro. 1 hit.
SUPFAMiSSF55031. SSF55031. 1 hit.
TIGRFAMsiTIGR01891. amidohydrolases. 1 hit.

Sequencei

Sequence statusi: Complete.

P54955-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MADKAFHTRL INMRRDLHEH PELSFQEVET TKKIRRWLEE EQIEILDVPQ
60 70 80 90 100
LKTGVIAEIK GREDGPVIAI RADIDALPIQ EQTNLPFASK VDGTMHACGH
110 120 130 140 150
DFHTASIIGT AMLLNQRRAE LKGTVRFIFQ PAEEIAAGAR KVLEAGVLNG
160 170 180 190 200
VSAIFGMHNK PDLPVGTIGV KEGPLMASVD RFEIVIKGKG GHAGIPNNSI
210 220 230 240 250
DPIAAAGQII SGLQSVVSRN ISSLQNAVVS ITRVQAGTSW NVIPDQAEME
260 270 280 290 300
GTVRTFQKEA RQAVPEHMRR VAEGIAAGYG AQAEFKWFPY LPSVQNDGTF
310 320 330 340 350
LNAASEAAAR LGYQTVHAEQ SPGGEDFALY QEKIPGFFVW MGTNGTEEWH
360 370 380
HPAFTLDEEA LTVASQYFAE LAVIVLETIK
Length:380
Mass (Da):41,552
Last modified:July 28, 2009 - v2
Checksum:iF36EAC6EF01AAFD3
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti54 – 541G → A in BAA08332 (PubMed:8867804).Curated
Sequence conflicti194 – 1941G → S in BAA08332 (PubMed:8867804).Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D45912 Genomic DNA. Translation: BAA08332.1.
AL009126 Genomic DNA. Translation: CAB15983.2.
PIRiB70076.
RefSeqiNP_391826.2. NC_000964.3.
WP_003243840.1. NZ_JNCM01000034.1.

Genome annotation databases

EnsemblBacteriaiCAB15983; CAB15983; BSU39470.
GeneIDi937572.
KEGGibsu:BSU39470.
PATRICi18979958. VBIBacSub10457_4141.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D45912 Genomic DNA. Translation: BAA08332.1.
AL009126 Genomic DNA. Translation: CAB15983.2.
PIRiB70076.
RefSeqiNP_391826.2. NC_000964.3.
WP_003243840.1. NZ_JNCM01000034.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1YSJX-ray2.40A/B1-380[»]
ProteinModelPortaliP54955.
SMRiP54955. Positions 2-379.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100021296.

Protein family/group databases

MEROPSiM20.015.

Proteomic databases

PaxDbiP54955.

Protocols and materials databases

DNASUi937572.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAB15983; CAB15983; BSU39470.
GeneIDi937572.
KEGGibsu:BSU39470.
PATRICi18979958. VBIBacSub10457_4141.

Phylogenomic databases

eggNOGiENOG4105CH2. Bacteria.
COG1473. LUCA.
HOGENOMiHOG000241404.
InParanoidiP54955.
KOiK01436.
OMAiGLHNAPE.
OrthoDBiEOG6B09WM.
PhylomeDBiP54955.

Enzyme and pathway databases

BioCyciBSUB:BSU39470-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP54955.

Family and domain databases

Gene3Di3.30.70.360. 1 hit.
InterProiIPR017439. Amidohydrolase.
IPR002933. Peptidase_M20.
IPR011650. Peptidase_M20_dimer.
[Graphical view]
PfamiPF07687. M20_dimer. 1 hit.
PF01546. Peptidase_M20. 1 hit.
[Graphical view]
PIRSFiPIRSF005962. Pept_M20D_amidohydro. 1 hit.
SUPFAMiSSF55031. SSF55031. 1 hit.
TIGRFAMsiTIGR01891. amidohydrolases. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Cloning and sequencing of a 23-kb region of the Bacillus subtilis genome between the iol and hut operons."
    Yoshida K., Fujimyra M., Yanai N., Fujita Y.
    DNA Res. 2:295-301(1995) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: 168 / BGSC1A1.
  2. "The complete genome sequence of the Gram-positive bacterium Bacillus subtilis."
    Kunst F., Ogasawara N., Moszer I., Albertini A.M., Alloni G., Azevedo V., Bertero M.G., Bessieres P., Bolotin A., Borchert S., Borriss R., Boursier L., Brans A., Braun M., Brignell S.C., Bron S., Brouillet S., Bruschi C.V.
    , Caldwell B., Capuano V., Carter N.M., Choi S.-K., Codani J.-J., Connerton I.F., Cummings N.J., Daniel R.A., Denizot F., Devine K.M., Duesterhoeft A., Ehrlich S.D., Emmerson P.T., Entian K.-D., Errington J., Fabret C., Ferrari E., Foulger D., Fritz C., Fujita M., Fujita Y., Fuma S., Galizzi A., Galleron N., Ghim S.-Y., Glaser P., Goffeau A., Golightly E.J., Grandi G., Guiseppi G., Guy B.J., Haga K., Haiech J., Harwood C.R., Henaut A., Hilbert H., Holsappel S., Hosono S., Hullo M.-F., Itaya M., Jones L.-M., Joris B., Karamata D., Kasahara Y., Klaerr-Blanchard M., Klein C., Kobayashi Y., Koetter P., Koningstein G., Krogh S., Kumano M., Kurita K., Lapidus A., Lardinois S., Lauber J., Lazarevic V., Lee S.-M., Levine A., Liu H., Masuda S., Mauel C., Medigue C., Medina N., Mellado R.P., Mizuno M., Moestl D., Nakai S., Noback M., Noone D., O'Reilly M., Ogawa K., Ogiwara A., Oudega B., Park S.-H., Parro V., Pohl T.M., Portetelle D., Porwollik S., Prescott A.M., Presecan E., Pujic P., Purnelle B., Rapoport G., Rey M., Reynolds S., Rieger M., Rivolta C., Rocha E., Roche B., Rose M., Sadaie Y., Sato T., Scanlan E., Schleich S., Schroeter R., Scoffone F., Sekiguchi J., Sekowska A., Seror S.J., Serror P., Shin B.-S., Soldo B., Sorokin A., Tacconi E., Takagi T., Takahashi H., Takemaru K., Takeuchi M., Tamakoshi A., Tanaka T., Terpstra P., Tognoni A., Tosato V., Uchiyama S., Vandenbol M., Vannier F., Vassarotti A., Viari A., Wambutt R., Wedler E., Wedler H., Weitzenegger T., Winters P., Wipat A., Yamamoto H., Yamane K., Yasumoto K., Yata K., Yoshida K., Yoshikawa H.-F., Zumstein E., Yoshikawa H., Danchin A.
    Nature 390:249-256(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 168.
  3. "From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later."
    Barbe V., Cruveiller S., Kunst F., Lenoble P., Meurice G., Sekowska A., Vallenet D., Wang T., Moszer I., Medigue C., Danchin A.
    Microbiology 155:1758-1775(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: SEQUENCE REVISION TO 54 AND 194.

Entry informationi

Entry nameiYXEP_BACSU
AccessioniPrimary (citable) accession number: P54955
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 1, 1996
Last sequence update: July 28, 2009
Last modified: February 17, 2016
This is version 113 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Bacillus subtilis
    Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. Peptidase families
    Classification of peptidase families and list of entries
  4. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.