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Protein

Uncharacterized protein YxeF

Gene

yxeF

Organism
Bacillus subtilis (strain 168)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciBSUB:BSU39570-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YxeF
Gene namesi
Name:yxeF
Ordered Locus Names:BSU39570
ORF Names:HS74F
OrganismiBacillus subtilis (strain 168)
Taxonomic identifieri224308 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
Proteomesi
  • UP000001570 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2323PROSITE-ProRule annotationAdd
BLAST
Chaini24 – 144121Uncharacterized protein YxeFPRO_0000013743Add
BLAST

Proteomic databases

PaxDbiP54945.
PRIDEiP54945.

Interactioni

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100021346.

Structurei

Secondary structure

1
144
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi36 – 394Combined sources
Beta strandi51 – 577Combined sources
Beta strandi59 – 6810Combined sources
Turni69 – 713Combined sources
Beta strandi72 – 754Combined sources
Beta strandi79 – 857Combined sources
Beta strandi88 – 9811Combined sources
Beta strandi104 – 1096Combined sources
Beta strandi115 – 1195Combined sources
Beta strandi122 – 1287Combined sources
Beta strandi133 – 1353Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2JOZNMR-A19-144[»]
ProteinModelPortaliP54945.
SMRiP54945. Positions 19-144.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP54945.

Family & Domainsi

Keywords - Domaini

Signal

Phylogenomic databases

HOGENOMiHOG000009219.
OMAiFYYGTWD.
OrthoDBiEOG64BQG2.

Family and domain databases

Gene3Di2.40.128.20. 1 hit.
InterProiIPR012674. Calycin.
IPR011038. Calycin-like.
IPR021664. DUF3255.
[Graphical view]
PfamiPF11631. DUF3255. 1 hit.
[Graphical view]
SUPFAMiSSF50814. SSF50814. 1 hit.
PROSITEiPS51257. PROKAR_LIPOPROTEIN. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P54945-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVIPLRNKYG ILFLIAVCIM VSGCQQQKEE TPFYYGTWDE GRAPGPTDGV
60 70 80 90 100
KSATVTFTED EVVETEVMEG RGEVQLPFMA YKVISQSTDG SIEIQYLGPY
110 120 130 140
YPLKSTLKRG ENGTLIWEQN GQRKTMTRIE SKTGREEKDE KSKS
Length:144
Mass (Da):16,271
Last modified:October 1, 1996 - v1
Checksum:iD6320F00C082B969
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D45912 Genomic DNA. Translation: BAA08322.1.
AL009126 Genomic DNA. Translation: CAB15993.1.
PIRiH70074.
RefSeqiNP_391836.1. NC_000964.3.
WP_003244165.1. NZ_JNCM01000034.1.

Genome annotation databases

EnsemblBacteriaiCAB15993; CAB15993; BSU39570.
GeneIDi937562.
KEGGibsu:BSU39570.
PATRICi18979978. VBIBacSub10457_4151.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D45912 Genomic DNA. Translation: BAA08322.1.
AL009126 Genomic DNA. Translation: CAB15993.1.
PIRiH70074.
RefSeqiNP_391836.1. NC_000964.3.
WP_003244165.1. NZ_JNCM01000034.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2JOZNMR-A19-144[»]
ProteinModelPortaliP54945.
SMRiP54945. Positions 19-144.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100021346.

Proteomic databases

PaxDbiP54945.
PRIDEiP54945.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAB15993; CAB15993; BSU39570.
GeneIDi937562.
KEGGibsu:BSU39570.
PATRICi18979978. VBIBacSub10457_4151.

Phylogenomic databases

HOGENOMiHOG000009219.
OMAiFYYGTWD.
OrthoDBiEOG64BQG2.

Enzyme and pathway databases

BioCyciBSUB:BSU39570-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP54945.

Family and domain databases

Gene3Di2.40.128.20. 1 hit.
InterProiIPR012674. Calycin.
IPR011038. Calycin-like.
IPR021664. DUF3255.
[Graphical view]
PfamiPF11631. DUF3255. 1 hit.
[Graphical view]
SUPFAMiSSF50814. SSF50814. 1 hit.
PROSITEiPS51257. PROKAR_LIPOPROTEIN. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Cloning and sequencing of a 23-kb region of the Bacillus subtilis genome between the iol and hut operons."
    Yoshida K., Fujimyra M., Yanai N., Fujita Y.
    DNA Res. 2:295-301(1995) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: 168 / BGSC1A1.
  2. "The complete genome sequence of the Gram-positive bacterium Bacillus subtilis."
    Kunst F., Ogasawara N., Moszer I., Albertini A.M., Alloni G., Azevedo V., Bertero M.G., Bessieres P., Bolotin A., Borchert S., Borriss R., Boursier L., Brans A., Braun M., Brignell S.C., Bron S., Brouillet S., Bruschi C.V.
    , Caldwell B., Capuano V., Carter N.M., Choi S.-K., Codani J.-J., Connerton I.F., Cummings N.J., Daniel R.A., Denizot F., Devine K.M., Duesterhoeft A., Ehrlich S.D., Emmerson P.T., Entian K.-D., Errington J., Fabret C., Ferrari E., Foulger D., Fritz C., Fujita M., Fujita Y., Fuma S., Galizzi A., Galleron N., Ghim S.-Y., Glaser P., Goffeau A., Golightly E.J., Grandi G., Guiseppi G., Guy B.J., Haga K., Haiech J., Harwood C.R., Henaut A., Hilbert H., Holsappel S., Hosono S., Hullo M.-F., Itaya M., Jones L.-M., Joris B., Karamata D., Kasahara Y., Klaerr-Blanchard M., Klein C., Kobayashi Y., Koetter P., Koningstein G., Krogh S., Kumano M., Kurita K., Lapidus A., Lardinois S., Lauber J., Lazarevic V., Lee S.-M., Levine A., Liu H., Masuda S., Mauel C., Medigue C., Medina N., Mellado R.P., Mizuno M., Moestl D., Nakai S., Noback M., Noone D., O'Reilly M., Ogawa K., Ogiwara A., Oudega B., Park S.-H., Parro V., Pohl T.M., Portetelle D., Porwollik S., Prescott A.M., Presecan E., Pujic P., Purnelle B., Rapoport G., Rey M., Reynolds S., Rieger M., Rivolta C., Rocha E., Roche B., Rose M., Sadaie Y., Sato T., Scanlan E., Schleich S., Schroeter R., Scoffone F., Sekiguchi J., Sekowska A., Seror S.J., Serror P., Shin B.-S., Soldo B., Sorokin A., Tacconi E., Takagi T., Takahashi H., Takemaru K., Takeuchi M., Tamakoshi A., Tanaka T., Terpstra P., Tognoni A., Tosato V., Uchiyama S., Vandenbol M., Vannier F., Vassarotti A., Viari A., Wambutt R., Wedler E., Wedler H., Weitzenegger T., Winters P., Wipat A., Yamamoto H., Yamane K., Yasumoto K., Yata K., Yoshida K., Yoshikawa H.-F., Zumstein E., Yoshikawa H., Danchin A.
    Nature 390:249-256(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 168.
  3. "Solution NMR structure of protein yxeF, northeast structural genomics consortium target SR500A."
    Northeast structural genomics consortium (NESG)
    Submitted (MAY-2007) to the PDB data bank
    Cited for: STRUCTURE BY NMR OF 19-144.

Entry informationi

Entry nameiYXEF_BACSU
AccessioniPrimary (citable) accession number: P54945
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 1, 1996
Last sequence update: October 1, 1996
Last modified: February 17, 2016
This is version 96 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Bacillus subtilis
    Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.