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Protein

Conjugal transfer protein TrbB

Gene

trbB

Organism
Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium radiobacter)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi151 – 1588ATPSequence Analysis

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-KW

GO - Biological processi

  1. conjugation Source: UniProtKB-KW
  2. transport Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

Conjugation, Transport

Keywords - Ligandi

ATP-binding, Nucleotide-binding

Enzyme and pathway databases

BioCyciRETL1328306-WGS:GSTH-6590-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Conjugal transfer protein TrbB
Gene namesi
Name:trbB
Encoded oniPlasmid pTiA6NC0 Publication
OrganismiRhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium radiobacter)
Taxonomic identifieri358 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeRhizobium/Agrobacterium groupAgrobacteriumAgrobacterium tumefaciens complex

Subcellular locationi

Cytoplasm Curated

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 323323Conjugal transfer protein TrbBPRO_0000207300Add
BLAST

Structurei

3D structure databases

ProteinModelPortaliP54907.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the GSP E family.Curated

Family and domain databases

Gene3Di3.40.50.300. 1 hit.
InterProiIPR014149. Conjug-transfer_TrbB.
IPR027417. P-loop_NTPase.
IPR001482. T2SS_protein-E.
[Graphical view]
PfamiPF00437. T2SE. 1 hit.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 1 hit.
TIGRFAMsiTIGR02782. TrbB_P. 1 hit.
PROSITEiPS00662. T2SP_E. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P54907-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MTQLRSHPRL VRKLQDSLGD QLCVALDDAT VVEIMLNPDG RLFIERLGHG
60 70 80 90 100
VVAAGAMTPA AAEVVIGSVA HALQSEADDE RPIISGELPI GGHRFEGLLP
110 120 130 140 150
PIVSGPAFTI RRRASRLIPL DDYVTSKVMT EAQASAIRSA IDSRMNIVIS
160 170 180 190 200
GGTGSGKTTL ANAIIAEIVT AAPDDRLVIL EDTAEIQCAA ENAVSLHTSD
210 220 230 240 250
TVDMARLLKS TMRLRPDRII VGEVRDGAAL TLLKAWNTGH PGGVTTIHSN
260 270 280 290 300
TALSALRRLE QLTAEASQQL MQEVIGEAVD LIVSIERSGK GRRVREVIHI
310 320
EGYRNNHYQT EHYAQIEEDS HVA
Length:323
Mass (Da):34,844
Last modified:October 1, 1996 - v1
Checksum:i651755469B9BF86E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF242881 Genomic DNA. Translation: AAB95094.1.
RefSeqiNP_059760.1. NC_002377.1.
WP_010892448.1. NC_002377.1.

Genome annotation databases

GeneIDi1224279.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF242881 Genomic DNA. Translation: AAB95094.1.
RefSeqiNP_059760.1. NC_002377.1.
WP_010892448.1. NC_002377.1.

3D structure databases

ProteinModelPortaliP54907.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi1224279.

Enzyme and pathway databases

BioCyciRETL1328306-WGS:GSTH-6590-MONOMER.

Family and domain databases

Gene3Di3.40.50.300. 1 hit.
InterProiIPR014149. Conjug-transfer_TrbB.
IPR027417. P-loop_NTPase.
IPR001482. T2SS_protein-E.
[Graphical view]
PfamiPF00437. T2SE. 1 hit.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 1 hit.
TIGRFAMsiTIGR02782. TrbB_P. 1 hit.
PROSITEiPS00662. T2SP_E. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The conjugal transfer system of Agrobacterium tumefaciens octopine-type Ti plasmids is closely related to the transfer system of an IncP plasmid and distantly related to Ti plasmid vir genes."
    Alt-Morbe J., Stryker J.L., Fuqua C., Li P.L., Farrand S.K., Winans S.C.
    J. Bacteriol. 178:4248-4257(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].

Entry informationi

Entry nameiTRBB_RHIRD
AccessioniPrimary (citable) accession number: P54907
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 1, 1996
Last sequence update: October 1, 1996
Last modified: January 7, 2015
This is version 65 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Plasmid

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.