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P54907 (TRBB_RHIRD) Reviewed, UniProtKB/Swiss-Prot

Last modified April 16, 2014. Version 59. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Conjugal transfer protein TrbB
Gene names
Name:trbB
Encoded onPlasmid pTiA6NC
OrganismRhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium radiobacter)
Taxonomic identifier358 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeRhizobium/Agrobacterium groupAgrobacteriumAgrobacterium tumefaciens complex

Protein attributes

Sequence length323 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Subcellular location

Cytoplasm Probable.

Sequence similarities

Belongs to the GSP E family.

Ontologies

Keywords
   Biological processConjugation
Transport
   Cellular componentCytoplasm
   LigandATP-binding
Nucleotide-binding
   Technical termPlasmid
Gene Ontology (GO)
   Biological_processconjugation

Inferred from electronic annotation. Source: UniProtKB-KW

transport

Inferred from electronic annotation. Source: UniProtKB-KW

   Cellular_componentcytoplasm

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular_functionATP binding

Inferred from electronic annotation. Source: UniProtKB-KW

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 323323Conjugal transfer protein TrbB
PRO_0000207300

Regions

Nucleotide binding151 – 1588ATP Potential

Sequences

Sequence LengthMass (Da)Tools
P54907 [UniParc].

Last modified October 1, 1996. Version 1.
Checksum: 651755469B9BF86E

FASTA32334,844
        10         20         30         40         50         60 
MTQLRSHPRL VRKLQDSLGD QLCVALDDAT VVEIMLNPDG RLFIERLGHG VVAAGAMTPA 

        70         80         90        100        110        120 
AAEVVIGSVA HALQSEADDE RPIISGELPI GGHRFEGLLP PIVSGPAFTI RRRASRLIPL 

       130        140        150        160        170        180 
DDYVTSKVMT EAQASAIRSA IDSRMNIVIS GGTGSGKTTL ANAIIAEIVT AAPDDRLVIL 

       190        200        210        220        230        240 
EDTAEIQCAA ENAVSLHTSD TVDMARLLKS TMRLRPDRII VGEVRDGAAL TLLKAWNTGH 

       250        260        270        280        290        300 
PGGVTTIHSN TALSALRRLE QLTAEASQQL MQEVIGEAVD LIVSIERSGK GRRVREVIHI 

       310        320 
EGYRNNHYQT EHYAQIEEDS HVA 

« Hide

References

[1]"The conjugal transfer system of Agrobacterium tumefaciens octopine-type Ti plasmids is closely related to the transfer system of an IncP plasmid and distantly related to Ti plasmid vir genes."
Alt-Morbe J., Stryker J.L., Fuqua C., Li P.L., Farrand S.K., Winans S.C.
J. Bacteriol. 178:4248-4257(1996) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AF242881 Genomic DNA. Translation: AAB95094.1.
RefSeqNP_059760.1. NC_002377.1.

3D structure databases

ProteinModelPortalP54907.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID1224279.

Phylogenomic databases

ProtClustDBPRK13833.

Family and domain databases

Gene3D3.40.50.300. 1 hit.
InterProIPR014149. Conjug-transfer_TrbB.
IPR027417. P-loop_NTPase.
IPR001482. T2SS_protein-E.
[Graphical view]
PfamPF00437. T2SE. 1 hit.
[Graphical view]
SUPFAMSSF52540. SSF52540. 1 hit.
TIGRFAMsTIGR02782. TrbB_P. 1 hit.
PROSITEPS00662. T2SP_E. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameTRBB_RHIRD
AccessionPrimary (citable) accession number: P54907
Entry history
Integrated into UniProtKB/Swiss-Prot: October 1, 1996
Last sequence update: October 1, 1996
Last modified: April 16, 2014
This is version 59 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families