P54901 (CSIE_ECOLI) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
Stationary phase-inducible protein CsiE

Gene names

Name:	csiE
Ordered Locus Names:	b2535, JW5878

Organism

Escherichia coli (strain K12) [Reference proteome] [HAMAP]

Taxonomic identifier

83333 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Enterobacteriales › Enterobacteriaceae › Escherichia › Escherichia coli

Protein attributes

Sequence length	426 AA.
Sequence status	Complete.
Protein existence	Predicted

General annotation (Comments)

Sequence similarities	Contains 2 PRD domains.
Sequence caution	The sequence AAA98796.1 differs from that shown. Reason: Frameshift at position 391.

Ontologies

Keywords
Domain	Repeat
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	regulation of transcription, DNA-dependent Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 426	426	Stationary phase-inducible protein CsiE		PRO_0000079400
Regions
	Domain	120 – 225	106	PRD 1
	Domain	229 – 336	108	PRD 2
Experimental info
	Sequence conflict	342	1	I → L in AAA98796. Ref.1

Sequences

	Sequence		Length	Mass (Da)
	P54901 [UniParc]. Last modified April 27, 2001. Version 3. Checksum: 325523977A327D85	FASTA	426	49,040
	10 20 30 40 50 60 MMPTLAPPSV LSAPQRRCQI LLTLFQPGLT ATMATFSELN GVDDDIASLD ISETGREILR 70 80 90 100 110 120 YHQLTLTTGY DGSYRVEGTV LNQRLCLFHW LRRGFRLCPS FITSQFTPAL KSELKRRGIA 130 140 150 160 170 180 RNFYDDTNLQ ALVNLCSRRL QKRFESRDIH FLCLYLQYCL LQHHAGITPQ FNPLQRRWAE 190 200 210 220 230 240 SCLEFQVAQE IGRHWQRRAL QPVPPDEPLF MALLFSMLRV PDPLRDAHQR DRQLRQSIKR 250 260 270 280 290 300 LVNHFRELGN VRFYDEQGLC DQLYTHLAQA LNRSLFAIGI DNTLPEEFAR LYPRLVRTTR 310 320 330 340 350 360 AALAGFESEY GVHLSDEESG LVAVIFGAWL MQENDLHEKQ IILLTGNDSE REAQIEQQLR 370 380 390 400 410 420 ELTLLPLNIK HMSVKAFLQT GAPRGAALII APYTMPLPLF SPPLIYTDLT LTTHQQEQIR KMLESA

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Complete coding sequence of the csiE gene of Escherichia coli." Marschall C., Hengge-Aronis R. Submitted (MAY-1996) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA]. Strain: K12 / MC4100 / ATCC 35695 / DSM 6574.
[2]	"Construction of a contiguous 874-kb sequence of the Escherichia coli-K12 genome corresponding to 50.0-68.8 min on the linkage map and analysis of its sequence features." Yamamoto Y., Aiba H., Baba T., Hayashi K., Inada T., Isono K., Itoh T., Kimura S., Kitagawa M., Makino K., Miki T., Mitsuhashi N., Mizobuchi K., Mori H., Nakade S., Nakamura Y., Nashimoto H., Oshima T. , Oyama S., Saito N., Sampei G., Satoh Y., Sivasundaram S., Tagami H., Takahashi H., Takeda J., Takemoto K., Uehara K., Wada C., Yamagata S., Horiuchi T. DNA Res. 4:91-113(1997) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
[3]	"The complete genome sequence of Escherichia coli K-12." Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V., Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F., Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., Mau B., Shao Y. Science 277:1453-1474(1997) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: K12 / MG1655 / ATCC 47076.
[4]	"Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110." Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T. Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: K12 / W3110 / ATCC 27325 / DSM 5911.

Cross-references

Sequence databases
EMBL GenBank DDBJ	L77687 Genomic DNA. Translation: AAA98796.1. Frameshift. U00096 Genomic DNA. Translation: AAC75588.2. AP009048 Genomic DNA. Translation: BAA16429.2.
RefSeq	NP_417030.2. NC_000913.2. YP_490763.1. NC_007779.1.
3D structure databases
ProteinModelPortal	P54901.
ModBase	Search...
Protein-protein interaction databases
DIP	DIP-9332N.
STRING	511145.b2535.
Proteomic databases
PaxDb	P54901.
PRIDE	P54901.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AAC75588; AAC75588; b2535. BAA16429; BAA16429; BAA16429.
GeneID	12932392. 947009.
KEGG	ecj:Y75_p2488. eco:b2535.
PATRIC	32120467. VBIEscCol129921_2636.
Organism-specific databases
EchoBASE	EB3194.
EcoGene	EG13418. csiE.
Phylogenomic databases
eggNOG	COG3711.
HOGENOM	HOG000123491.
OMA	GIVNSNY.
ProtClustDB	PRK11564.
Enzyme and pathway databases
BioCyc	EcoCyc:G7329-MONOMER. ECOL316407:JW5878-MONOMER.
Gene expression databases
Genevestigator	P54901.
Family and domain databases
Gene3D	1.10.1790.10. 1 hit.
InterPro	IPR011608. PRD. [Graphical view]
Pfam	PF00874. PRD. 2 hits. [Graphical view]
SUPFAM	SSF63520. PRD. 1 hit.
PROSITE	PS51372. PRD_2. 2 hits. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

CSIE_ECOLI

Accession

Primary (citable) accession number: P54901
Secondary accession number(s): P76582, P77573

Entry history

Integrated into UniProtKB/Swiss-Prot:	October 1, 1996
Last sequence update:	April 27, 2001
Last modified:	May 1, 2013
This is version 84 of the entry and version 3 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program