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Reviewed, UniProtKB/Swiss-Prot P54750 (PDE1A_HUMAN)

Last modified November 3, 2009. Version 101. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (4) | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Alternative products · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents

Names and origin

Protein namesRecommended name:
    Calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A
      Short name=Cam-PDE 1A
    EC=3.1.4.17
Alternative name(s):
    61 kDa Cam-PDE
      Short name=hCam-1
Gene names
Name: PDE1A
OrganismHomo sapiens (Human) [Complete proteome]
Taxonomic identifier9606 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo

Protein attributes

Sequence length535 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceEvidence at transcript level.

General annotation (Comments)

Function

Has a higher affinity for cGMP than for cAMP.

Catalytic activity

Nucleoside 3',5'-cyclic phosphate + H2O = nucleoside 5'-phosphate.

Enzyme regulation

Type I PDE are activated by the binding of calmodulin in the presence of Ca2+.

Subunit structure

Homodimer By similarity.

Tissue specificity

Several tissues, including brain, kidney, testes and heart.

Sequence similarities

Belongs to the cyclic nucleotide phosphodiesterase family.

Ontologies

Keywords
   Coding sequence diversityAlternative splicing
   LigandCalmodulin-binding
cAMP
cGMP
   Molecular functionHydrolase
   Technical term3D-structure
Complete proteome
Gene Ontology (GO)
   Biological processsignal transduction

Inferred from electronic annotation. Source: InterPro

   Cellular componentcytosol

Inferred from Experiment. Source: Reactome

   Molecular functioncalmodulin binding

Inferred from electronic annotation. Source: UniProtKB-KW

calmodulin-dependent cyclic-nucleotide phosphodiesterase activity Ref.1

Traceable author statement. Source: ProtInc

Complete GO annotation...

Alternative products

This entry describes 9 isoforms produced by alternative splicing. [Align] [Select]
Isoform 1 (identifier: P54750-1)

Also known as: PDE1A3; PDE1A6;

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.
Isoform 2 (identifier: P54750-2)

Also known as: PDE1A4; PDE1A5;

The sequence of this isoform differs from the canonical sequence as follows:
     1-34: MGSSATEIEELENTTFKYLTGEQTEKMWQRLKGI → MDDHVTIRKKHLQRPIFR
Isoform 3 (identifier: P54750-3)

Also known as: PDE1A10;

The sequence of this isoform differs from the canonical sequence as follows:
     1-72: MGSSATEIEE...LEAVYIDETR → MGKKINKLFC...IRKKVKNHIE
Isoform 4 (identifier: P54750-4)

Also known as: PDE1A5;

The sequence of this isoform differs from the canonical sequence as follows:
     522-535: EARTSSQKCEFIHQ → GESDLHKNSEDLVNAEEKHDETHS
Isoform 5 (identifier: P54750-5)

Also known as: PDE1A9;

The sequence of this isoform differs from the canonical sequence as follows:
     522-535: EARTSSQKCEFIHQ → GSVVYEALLPSLSVFTSPLRVWITSSRFLLL
Isoform 6 (identifier: P54750-6)

Also known as: PDE1A1;

The sequence of this isoform differs from the canonical sequence as follows:
     1-34: MGSSATEIEELENTTFKYLTGEQTEKMWQRLKGI → MDDHVTIRKKHLQRPIFR
     522-535: EARTSSQKCEFIHQ → GESDLHKNSEDLVNAEEKHDETHS
Isoform 7 (identifier: P54750-7)

Also known as: PDE1A8;

The sequence of this isoform differs from the canonical sequence as follows:
     1-34: MGSSATEIEELENTTFKYLTGEQTEKMWQRLKGI → MDDHVTIRKKHLQRPIFR
     522-535: EARTSSQKCEFIHQ → GSVVYEALLPSLSVFTSPLRVWITSSRFLLL
Isoform 8 (identifier: P54750-8)

Also known as: PDE1A11;

The sequence of this isoform differs from the canonical sequence as follows:
     1-72: MGSSATEIEE...LEAVYIDETR → MGKKINKLFC...IRKKVKNHIE
     522-535: EARTSSQKCEFIHQ → GESDLHKNSEDLVNAEEKHDETHS
Isoform 9 (identifier: P54750-9)

Also known as: PDE1A12;

The sequence of this isoform differs from the canonical sequence as follows:
     1-72: MGSSATEIEE...LEAVYIDETR → MGKKINKLFC...IRKKVKNHIE
     522-535: EARTSSQKCEFIHQ → GSVVYEALLPSLSVFTSPLRVWITSSRFLLL

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Initiator methionine11Removed By similarity
Chain2 – 535534Calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A
PRO_0000198785

Regions

Region24 – 4421Calmodulin-binding By similarity
Region193 – 515323Catalytic By similarity

Natural variations

Alternative sequence1 – 7272MGSSA…IDETR → MGKKINKLFCFNFLVQCFRG KSKPSKCQIRKKVKNHIE in isoform 3, isoform 8 and isoform 9.
VSP_004548
Alternative sequence1 – 3434MGSSA…RLKGI → MDDHVTIRKKHLQRPIFR in isoform 2, isoform 6 and isoform 7.
VSP_004547
Alternative sequence522 – 53514EARTS…EFIHQ → GESDLHKNSEDLVNAEEKHD ETHS in isoform 4, isoform 6 and isoform 8.
VSP_004549
Alternative sequence522 – 53514EARTS…EFIHQ → GSVVYEALLPSLSVFTSPLR VWITSSRFLLL in isoform 5, isoform 7 and isoform 9.
VSP_004550

Secondary structure

................................................. 535
Helix Strand Turn

Details...

Sequences

Sequence LengthMass (Da)Tools
Isoform 1 (PDE1A3) (PDE1A6) [UniParc].

Last modified January 23, 2007. Version 2.
Checksum: B1878145160BB3D7

FASTA53561,252
        10         20         30         40         50         60 
MGSSATEIEE LENTTFKYLT GEQTEKMWQR LKGILRCLVK QLERGDVNVV DLKKNIEYAA 

        70         80         90        100        110        120 
SVLEAVYIDE TRRLLDTEDE LSDIQTDSVP SEVRDWLAST FTRKMGMTKK KPEEKPKFRS 

       130        140        150        160        170        180 
IVHAVQAGIF VERMYRKTYH MVGLAYPAAV IVTLKDVDKW SFDVFALNEA SGEHSLKFMI 

       190        200        210        220        230        240 
YELFTRYDLI NRFKIPVSCL ITFAEALEVG YSKYKNPYHN LIHAADVTQT VHYIMLHTGI 

       250        260        270        280        290        300 
MHWLTELEIL AMVFAAAIHD YEHTGTTNNF HIQTRSDVAI LYNDRSVLEN HHVSAAYRLM 

       310        320        330        340        350        360 
QEEEMNILIN LSKDDWRDLR NLVIEMVLST DMSGHFQQIK NIRNSLQQPE GIDRAKTMSL 

       370        380        390        400        410        420 
ILHAADISHP AKSWKLHYRW TMALMEEFFL QGDKEAELGL PFSPLCDRKS TMVAQSQIGF 

       430        440        450        460        470        480 
IDFIVEPTFS LLTDSTEKIV IPLIEEASKA ETSSYVASSS TTIVGLHIAD ALRRSNTKGS 

       490        500        510        520        530 
MSDGSYSPDY SLAAVDLKSF KNNLVDIIQQ NKERWKELAA QEARTSSQKC EFIHQ 

« Hide

Isoform 2 (PDE1A4) (PDE1A5).

Checksum: 51F86B0EF08C01CE
Show »

FASTA51959,592
Isoform 3 (PDE1A10).

Checksum: 74C082300051D62C
Show »

FASTA50157,483
Isoform 4 (PDE1A5).

Checksum: BE2A280A504FDB9E
Show »

FASTA54562,309
Isoform 5 (PDE1A9).

Checksum: 0956259BB3F5E938
Show »

FASTA55263,040
Isoform 6 (PDE1A1).

Checksum: 39CF97424CCC0CE2
Show »

FASTA52960,649
Isoform 7 (PDE1A8).

Checksum: 8CDAD40B298EB3FF
Show »

FASTA53661,380
Isoform 8 (PDE1A11).

Checksum: 415D4C1242D9B547
Show »

FASTA51158,540
Isoform 9 (PDE1A12).

Checksum: 4C1AF30315076AF7
Show »

FASTA51859,271

References

« Hide 'large scale' references
[1]"Isolation and characterization of cDNAs corresponding to two human calcium, calmodulin-regulated, 3',5'-cyclic nucleotide phosphodiesterases."
Loughney K., Martins T.J., Harris E.A.S., Sadhu K., Hicks J.B., Sonnenburg W.K., Beavo J.A., Ferguson K.
J. Biol. Chem. 271:796-806(1996) [PubMed: 8557689] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1).
[2]"Human Ca2+/calmodulin-dependent phosphodiesterase PDE1A: novel splice variants, their specific expression, genomic organization, and chromosomal localization."
Michibata H., Yanaka N., Kanoh Y., Okumura K., Omori K.
Biochim. Biophys. Acta 1517:278-287(2001) [PubMed: 11342109] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE (ISOFORMS 1; 2; 3; 4; 5; 6; 7; 8 AND 9).
Tissue: Heart.
[3]"Isolation and differential tissue distribution of two human cDNAs encoding PDE1 splice variants."
Fidock M.D., Miller M., Lanfear J.
Cell. Signal. 14:53-60(2002) [PubMed: 11747989] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 2).
Tissue: Brain.
[4]"The full-ORF clone resource of the German cDNA consortium."
Bechtel S., Rosenfelder H., Duda A., Schmidt C.P., Ernst U., Wellenreuther R., Mehrle A., Schuster C., Bahr A., Bloecker H., Heubner D., Hoerlein A., Michel G., Wedler H., Koehrer K., Ottenwaelder B., Poustka A., Wiemann S., Schupp I.
BMC Genomics 8:399-399(2007) [PubMed: 17974005] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
Tissue: Uterus.
[5]"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
The MGC Project Team
Genome Res. 14:2121-2127(2004) [PubMed: 15489334] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 3 AND 4).
Tissue: Brain.
+Additional computationally mapped references.

Cross-references

Sequence databases

U40370 mRNA. Translation: AAC50436.1.
AB038224 Genomic DNA. Translation: BAB20049.1.
AB038224 Genomic DNA. Translation: BAB20050.1.
AB038224 Genomic DNA. Translation: BAB20051.1.
AB038224 Genomic DNA. Translation: BAB20052.1.
AB038224 Genomic DNA. Translation: BAB20053.1.
AB038224 Genomic DNA. Translation: BAB20054.1.
AB038224 Genomic DNA. Translation: BAB20055.1.
AB038224 Genomic DNA. Translation: BAB20056.1.
AB038224 Genomic DNA. Translation: BAB20057.1.
AJ401610 mRNA. Translation: CAC82208.1.
AL110263 mRNA. Translation: CAB53703.1.
BC022480 mRNA. Translation: AAH22480.1.
IPIIPI00008282.
IPI00171816.
IPI00221139.
IPI00221140.
IPI00335536.
IPI00377231.
IPI00395021.
IPI00395024.
IPI00399272.
PIRT14783.
RefSeqNP_001003683.1.
NP_005010.2.
UniGeneHs.191046
Hs.680373

3D structure databases

EntryMethodResolution (Å)ChainPositionsPDBsum
1LXQmodel-A154-432[»]
SMRP54750. Positions 142-471.
ModBaseSearch...

Protein-protein interaction databases

STRINGP54750.

PTM databases

PhosphoSiteP54750.

Proteomic databases

PRIDEP54750.

Genome annotation databases

EnsemblENST00000331935; ENSP00000331574; ENSG00000115252; Homo sapiens. [Genome view]
ENST00000346717; ENSP00000329112; ENSG00000115252; Homo sapiens. [Genome view]
ENST00000351439; ENSP00000309269; ENSG00000115252; Homo sapiens. [Genome view]
ENST00000358139; ENSP00000350858; ENSG00000115252; Homo sapiens. [Genome view]
ENST00000409365; ENSP00000386767; ENSG00000115252; Homo sapiens. [Genome view]
ENST00000410103; ENSP00000387037; ENSG00000115252; Homo sapiens. [Genome view]
ENST00000435564; ENSP00000410309; ENSG00000115252; Homo sapiens. [Genome view]
ENST00000456212; ENSP00000408874; ENSG00000115252; Homo sapiens. [Genome view]
GeneID5136.
KEGGhsa:5136.
UCSCuc002uoq.1. human.
uc002uor.1. human.
uc002uos.1. human.

Organism-specific databases

CTD5136.
GeneCardsGC02M182715.
H-InvDBHIX0002648.
HGNCHGNC:8774. PDE1A.
HPAHPA022151.
MIM171890. gene.
PharmGKBPA33122.
GenAtlasSearch...

Phylogenomic databases

HOVERGENP54750.
OMALENTTFK.

Enzyme and pathway databases

BRENDA3.1.4.17. 247.
ReactomeREACT_11061. Signalling by NGF.
REACT_14797. Signaling by GPCR.
REACT_15295. Opioid Signalling.

Gene expression databases

ArrayExpressP54750.
BgeeP54750.
GenevestigatorP54750.
GermOnlineENSG00000115252. Homo sapiens.

Family and domain databases

InterProIPR003607. Met-dep_phosphohydro_HD.
IPR002073. PDEase.
IPR013706. PDEase_N.
[Graphical view]
PfamPF00233. PDEase_I. 1 hit.
PF08499. PDEase_I_N. 1 hit.
[Graphical view]
PRINTSPR00387. PDIESTERASE1.
SMARTSM00471. HDc. 1 hit.
[Graphical view]
PROSITEPS00126. PDEASE_I. 1 hit.
[Graphical view]
ProtoNetSearch...

Other Resources

NextBio19802.
SOURCESearch...

Entry information

Entry namePDE1A_HUMAN
AccessionPrimary (citable) accession number: P54750
Secondary accession number(s): Q86VZ0 expand/collapse secondary AC list , Q9C0K8, Q9C0K9, Q9C0L0, Q9C0L1, Q9C0L2, Q9C0L3, Q9C0L4, Q9UFX3
Entry history
Integrated into UniProtKB/Swiss-Prot: October 1, 1996
Last sequence update: January 23, 2007
Last modified: November 3, 2009
This is version 101 of the entry and version 2 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation projectHPI (Human Proteome Initiative)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Relevant documents

Human chromosome 2

Human chromosome 2: entries, gene names and cross-references to MIM

MIM cross-references

Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot

PDB cross-references

Index of Protein Data Bank (PDB) cross-references

SIMILARITY comments

Index of protein domains and families

Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Alternative products · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents