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P54636

- VP2_LORDV

UniProt

P54636 - VP2_LORDV

Protein

Protein VP2

Gene

ORF3

Organism
Lordsdale virus (strain GII/Human/United Kingdom/Lordsdale/1993) (Human enteric calicivirus) (Hu/NV/LD/1993/UK)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 33 (01 Oct 2014)
      Sequence version 1 (01 Oct 1996)
      Previous versions | rss
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    Functioni

    Minor structural protein present in one or two copies per virion. Stabilizes capsid protein VP1 by protecting it from disassembly and degradation. May play a role in RNA genome packaging By similarity.By similarity

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Protein VP2
    Alternative name(s):
    Minor capsid protein
    Gene namesi
    ORF Names:ORF3
    OrganismiLordsdale virus (strain GII/Human/United Kingdom/Lordsdale/1993) (Human enteric calicivirus) (Hu/NV/LD/1993/UK)
    Taxonomic identifieri82658 [NCBI]
    Taxonomic lineageiVirusesssRNA positive-strand viruses, no DNA stageCaliciviridaeNorovirus
    Virus hostiHomo sapiens (Human) [TaxID: 9606]
    ProteomesiUP000007767: Genome

    Subcellular locationi

    Virion. Host cytoplasm By similarity

    GO - Cellular componenti

    1. host cell cytoplasm Source: UniProtKB-SubCell
    2. virion Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    Host cytoplasm, Virion

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 268268Protein VP2PRO_0000100130Add
    BLAST

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the norovirus VP2 family.Curated

    Family and domain databases

    InterProiIPR004278. RNA_pol/capsid.
    [Graphical view]
    PfamiPF03035. RNA_capsid. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    P54636-1 [UniParc]FASTAAdd to Basket

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    MAGAFFAGLA SDVLGSGLGS LINAGAGAIN QKVEFENNRK LQQASFQFSS    50
    TLQQASFQHD KEMLQAQIEA TQKLQQDLMK VKQAVLLEGG FSTADAARGA 100
    INAPMTKALD WSGTRYWAPD ARVTTYNAGH FSTPQSLGAL TGRTNSRVSA 150
    PARSSPSALS NAPTATSLHS NQTVSTRLGS SAGSGTGVSS LSSAARTRSW 200
    VEDQNRNLSP FMRGALNTSF VTPPSSRSSS QSTVSTVPKE ILDSWTGAFN 250
    TRRQPLFAHI RKRGESRV 268
    Length:268
    Mass (Da):28,458
    Last modified:October 1, 1996 - v1
    Checksum:iFE6F19E4D7D1587E
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    X86557 Genomic RNA. Translation: CAA60256.1.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    X86557 Genomic RNA. Translation: CAA60256.1 .

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Family and domain databases

    InterProi IPR004278. RNA_pol/capsid.
    [Graphical view ]
    Pfami PF03035. RNA_capsid. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Human enteric Caliciviridae: the complete genome sequence and expression of virus-like particles from a genetic group II small round structured virus."
      Dingle K.E., Lambden P.R., Caul E.O., Clarke I.N.
      J. Gen. Virol. 76:2349-2355(1995) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].

    Entry informationi

    Entry nameiVP2_LORDV
    AccessioniPrimary (citable) accession number: P54636
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: October 1, 1996
    Last sequence update: October 1, 1996
    Last modified: October 1, 2014
    This is version 33 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programViral Protein Annotation Program

    Miscellaneousi

    Miscellaneous

    Translated by a ribosomal termination-reinitiation process from the bicistronic mRNA coding for VP1 and VP2.

    Keywords - Technical termi

    Complete proteome

    Documents

    1. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3