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P54469

- YQFD_BACSU

UniProt

P54469 - YQFD_BACSU

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Protein

Uncharacterized protein YqfD

Gene

yqfD

Organism
Bacillus subtilis (strain 168)
Status
Reviewed - Annotation score: 2 out of 5- Protein predictedi

Functioni

GO - Biological processi

  1. sporulation resulting in formation of a cellular spore Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

Sporulation

Enzyme and pathway databases

BioCyciBSUB:BSU25350-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YqfD
Gene namesi
Name:yqfD
Ordered Locus Names:BSU25350
OrganismiBacillus subtilis (strain 168)
Taxonomic identifieri224308 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
ProteomesiUP000001570: Chromosome

Organism-specific databases

GenoListiBSU25350.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei88 – 10821HelicalSequence AnalysisAdd
BLAST

GO - Cellular componenti

  1. integral component of membrane Source: UniProtKB-KW
  2. plasma membrane Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 398398Uncharacterized protein YqfDPRO_0000049796Add
BLAST

Proteomic databases

PaxDbiP54469.

Interactioni

Protein-protein interaction databases

STRINGi224308.BSU25350.

Family & Domainsi

Sequence similaritiesi

To B.megaterium SpoIV.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiNOG07111.
HOGENOMiHOG000097016.
KOiK06438.
OrthoDBiEOG6X9MJS.
PhylomeDBiP54469.

Family and domain databases

InterProiIPR010690. YqfD.
[Graphical view]
PfamiPF06898. YqfD. 1 hit.
[Graphical view]
PIRSFiPIRSF029895. SpoIV. 1 hit.
TIGRFAMsiTIGR02876. spore_yqfD. 1 hit.

Sequencei

Sequence statusi: Complete.

P54469-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MKNKWLSFFS GKVQLELTGR GIERLLNECT RQGIPVFHVK KKKEAVSLYI
60 70 80 90 100
QLQDVHAFRR VRSKFKCKAR FINRKGFPFL LLKSKLNIGF TIGFAIFFIL
110 120 130 140 150
LFLLSNMVWK IDVTGAKPET EHQMRQHLNE IGVKKGRLQF LMMSPEKIQK
160 170 180 190 200
SLTNGIDNIT WVGVDLKGTT IHMKVVEKNE PEKEKYVSPR NIVAKKKATI
210 220 230 240 250
TRMFVQKGQP MAAIHDHVEK GQLLVSGLIG SEDHQQEVAS KAEIYGETWY
260 270 280 290 300
RSEVTVPLET LFNVYTGKVR TKHKLSFGSL AIPIWGMTFK KEELKHPKTE
310 320 330 340 350
QEKHSLHFLG FKLPVSYVKE QTRESEEALR KYTKEEAVQE GIKLGKQDVE
360 370 380 390
DKIGENGEVK SEKVLHQTVE NGKVKLIILY QVIEDIVQTT PIVRETEE
Length:398
Mass (Da):45,815
Last modified:July 7, 2009 - v2
Checksum:i36329427C8EEED10
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti31 – 311R → K in BAA12476. (PubMed:8969508)Curated
Sequence conflicti204 – 2041F → S in BAA12476. (PubMed:8969508)Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D84432 Genomic DNA. Translation: BAA12476.1.
AL009126 Genomic DNA. Translation: CAB14477.2.
PIRiD69953.
RefSeqiNP_390413.2. NC_000964.3.

Genome annotation databases

EnsemblBacteriaiCAB14477; CAB14477; BSU25350.
GeneIDi937867.
KEGGibsu:BSU25350.
PATRICi18976908. VBIBacSub10457_2643.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D84432 Genomic DNA. Translation: BAA12476.1 .
AL009126 Genomic DNA. Translation: CAB14477.2 .
PIRi D69953.
RefSeqi NP_390413.2. NC_000964.3.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 224308.BSU25350.

Proteomic databases

PaxDbi P54469.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai CAB14477 ; CAB14477 ; BSU25350 .
GeneIDi 937867.
KEGGi bsu:BSU25350.
PATRICi 18976908. VBIBacSub10457_2643.

Organism-specific databases

GenoListi BSU25350.

Phylogenomic databases

eggNOGi NOG07111.
HOGENOMi HOG000097016.
KOi K06438.
OrthoDBi EOG6X9MJS.
PhylomeDBi P54469.

Enzyme and pathway databases

BioCyci BSUB:BSU25350-MONOMER.

Family and domain databases

InterProi IPR010690. YqfD.
[Graphical view ]
Pfami PF06898. YqfD. 1 hit.
[Graphical view ]
PIRSFi PIRSF029895. SpoIV. 1 hit.
TIGRFAMsi TIGR02876. spore_yqfD. 1 hit.
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Systematic sequencing of the 283 kb 210 degrees-232 degrees region of the Bacillus subtilis genome containing the skin element and many sporulation genes."
    Mizuno M., Masuda S., Takemaru K., Hosono S., Sato T., Takeuchi M., Kobayashi Y.
    Microbiology 142:3103-3111(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: 168 / JH642.
  2. "The complete genome sequence of the Gram-positive bacterium Bacillus subtilis."
    Kunst F., Ogasawara N., Moszer I., Albertini A.M., Alloni G., Azevedo V., Bertero M.G., Bessieres P., Bolotin A., Borchert S., Borriss R., Boursier L., Brans A., Braun M., Brignell S.C., Bron S., Brouillet S., Bruschi C.V.
    , Caldwell B., Capuano V., Carter N.M., Choi S.-K., Codani J.-J., Connerton I.F., Cummings N.J., Daniel R.A., Denizot F., Devine K.M., Duesterhoeft A., Ehrlich S.D., Emmerson P.T., Entian K.-D., Errington J., Fabret C., Ferrari E., Foulger D., Fritz C., Fujita M., Fujita Y., Fuma S., Galizzi A., Galleron N., Ghim S.-Y., Glaser P., Goffeau A., Golightly E.J., Grandi G., Guiseppi G., Guy B.J., Haga K., Haiech J., Harwood C.R., Henaut A., Hilbert H., Holsappel S., Hosono S., Hullo M.-F., Itaya M., Jones L.-M., Joris B., Karamata D., Kasahara Y., Klaerr-Blanchard M., Klein C., Kobayashi Y., Koetter P., Koningstein G., Krogh S., Kumano M., Kurita K., Lapidus A., Lardinois S., Lauber J., Lazarevic V., Lee S.-M., Levine A., Liu H., Masuda S., Mauel C., Medigue C., Medina N., Mellado R.P., Mizuno M., Moestl D., Nakai S., Noback M., Noone D., O'Reilly M., Ogawa K., Ogiwara A., Oudega B., Park S.-H., Parro V., Pohl T.M., Portetelle D., Porwollik S., Prescott A.M., Presecan E., Pujic P., Purnelle B., Rapoport G., Rey M., Reynolds S., Rieger M., Rivolta C., Rocha E., Roche B., Rose M., Sadaie Y., Sato T., Scanlan E., Schleich S., Schroeter R., Scoffone F., Sekiguchi J., Sekowska A., Seror S.J., Serror P., Shin B.-S., Soldo B., Sorokin A., Tacconi E., Takagi T., Takahashi H., Takemaru K., Takeuchi M., Tamakoshi A., Tanaka T., Terpstra P., Tognoni A., Tosato V., Uchiyama S., Vandenbol M., Vannier F., Vassarotti A., Viari A., Wambutt R., Wedler E., Wedler H., Weitzenegger T., Winters P., Wipat A., Yamamoto H., Yamane K., Yasumoto K., Yata K., Yoshida K., Yoshikawa H.-F., Zumstein E., Yoshikawa H., Danchin A.
    Nature 390:249-256(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 168.
  3. "From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later."
    Barbe V., Cruveiller S., Kunst F., Lenoble P., Meurice G., Sekowska A., Vallenet D., Wang T., Moszer I., Medigue C., Danchin A.
    Microbiology 155:1758-1775(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: SEQUENCE REVISION TO 31 AND 204.

Entry informationi

Entry nameiYQFD_BACSU
AccessioniPrimary (citable) accession number: P54469
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 1, 1996
Last sequence update: July 7, 2009
Last modified: October 29, 2014
This is version 82 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Bacillus subtilis
    Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList

External Data

Dasty 3