Skip Header

You are using a version of Internet Explorer that may not display all features of this website. Please upgrade to a modern browser.
Contribute Send feedback
Read comments (?) or add your own

P54469 (YQFD_BACSU) Reviewed, UniProtKB/Swiss-Prot

Last modified July 9, 2014. Version 80. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Uncharacterized protein YqfD
Gene names
Name:yqfD
Ordered Locus Names:BSU25350
OrganismBacillus subtilis (strain 168) [Reference proteome] [HAMAP]
Taxonomic identifier224308 [NCBI]
Taxonomic lineageBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus

Protein attributes

Sequence length398 AA.
Sequence statusComplete.
Protein existencePredicted

General annotation (Comments)

Subcellular location

Cell membrane; Single-pass membrane protein Potential.

Sequence similarities

To B.megaterium SpoIV.

Ontologies

Keywords
   Biological processSporulation
   Cellular componentCell membrane
Membrane
   DomainTransmembrane
Transmembrane helix
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological_processsporulation resulting in formation of a cellular spore

Inferred from electronic annotation. Source: UniProtKB-KW

   Cellular_componentintegral component of membrane

Inferred from electronic annotation. Source: UniProtKB-KW

plasma membrane

Inferred from electronic annotation. Source: UniProtKB-SubCell

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 398398Uncharacterized protein YqfD
PRO_0000049796

Regions

Transmembrane88 – 10821Helical; Potential

Experimental info

Sequence conflict311R → K in BAA12476. Ref.1
Sequence conflict2041F → S in BAA12476. Ref.1

Sequences

Sequence LengthMass (Da)Tools
P54469 [UniParc].

Last modified July 7, 2009. Version 2.
Checksum: 36329427C8EEED10

FASTA39845,815
        10         20         30         40         50         60 
MKNKWLSFFS GKVQLELTGR GIERLLNECT RQGIPVFHVK KKKEAVSLYI QLQDVHAFRR 

        70         80         90        100        110        120 
VRSKFKCKAR FINRKGFPFL LLKSKLNIGF TIGFAIFFIL LFLLSNMVWK IDVTGAKPET 

       130        140        150        160        170        180 
EHQMRQHLNE IGVKKGRLQF LMMSPEKIQK SLTNGIDNIT WVGVDLKGTT IHMKVVEKNE 

       190        200        210        220        230        240 
PEKEKYVSPR NIVAKKKATI TRMFVQKGQP MAAIHDHVEK GQLLVSGLIG SEDHQQEVAS 

       250        260        270        280        290        300 
KAEIYGETWY RSEVTVPLET LFNVYTGKVR TKHKLSFGSL AIPIWGMTFK KEELKHPKTE 

       310        320        330        340        350        360 
QEKHSLHFLG FKLPVSYVKE QTRESEEALR KYTKEEAVQE GIKLGKQDVE DKIGENGEVK 

       370        380        390 
SEKVLHQTVE NGKVKLIILY QVIEDIVQTT PIVRETEE 

« Hide

References

« Hide 'large scale' references
[1]"Systematic sequencing of the 283 kb 210 degrees-232 degrees region of the Bacillus subtilis genome containing the skin element and many sporulation genes."
Mizuno M., Masuda S., Takemaru K., Hosono S., Sato T., Takeuchi M., Kobayashi Y.
Microbiology 142:3103-3111(1996) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
Strain: 168 / JH642.
[2]"The complete genome sequence of the Gram-positive bacterium Bacillus subtilis."
Kunst F., Ogasawara N., Moszer I., Albertini A.M., Alloni G., Azevedo V., Bertero M.G., Bessieres P., Bolotin A., Borchert S., Borriss R., Boursier L., Brans A., Braun M., Brignell S.C., Bron S., Brouillet S., Bruschi C.V. expand/collapse author list , Caldwell B., Capuano V., Carter N.M., Choi S.-K., Codani J.-J., Connerton I.F., Cummings N.J., Daniel R.A., Denizot F., Devine K.M., Duesterhoeft A., Ehrlich S.D., Emmerson P.T., Entian K.-D., Errington J., Fabret C., Ferrari E., Foulger D., Fritz C., Fujita M., Fujita Y., Fuma S., Galizzi A., Galleron N., Ghim S.-Y., Glaser P., Goffeau A., Golightly E.J., Grandi G., Guiseppi G., Guy B.J., Haga K., Haiech J., Harwood C.R., Henaut A., Hilbert H., Holsappel S., Hosono S., Hullo M.-F., Itaya M., Jones L.-M., Joris B., Karamata D., Kasahara Y., Klaerr-Blanchard M., Klein C., Kobayashi Y., Koetter P., Koningstein G., Krogh S., Kumano M., Kurita K., Lapidus A., Lardinois S., Lauber J., Lazarevic V., Lee S.-M., Levine A., Liu H., Masuda S., Mauel C., Medigue C., Medina N., Mellado R.P., Mizuno M., Moestl D., Nakai S., Noback M., Noone D., O'Reilly M., Ogawa K., Ogiwara A., Oudega B., Park S.-H., Parro V., Pohl T.M., Portetelle D., Porwollik S., Prescott A.M., Presecan E., Pujic P., Purnelle B., Rapoport G., Rey M., Reynolds S., Rieger M., Rivolta C., Rocha E., Roche B., Rose M., Sadaie Y., Sato T., Scanlan E., Schleich S., Schroeter R., Scoffone F., Sekiguchi J., Sekowska A., Seror S.J., Serror P., Shin B.-S., Soldo B., Sorokin A., Tacconi E., Takagi T., Takahashi H., Takemaru K., Takeuchi M., Tamakoshi A., Tanaka T., Terpstra P., Tognoni A., Tosato V., Uchiyama S., Vandenbol M., Vannier F., Vassarotti A., Viari A., Wambutt R., Wedler E., Wedler H., Weitzenegger T., Winters P., Wipat A., Yamamoto H., Yamane K., Yasumoto K., Yata K., Yoshida K., Yoshikawa H.-F., Zumstein E., Yoshikawa H., Danchin A.
Nature 390:249-256(1997) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 168.
[3]"From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later."
Barbe V., Cruveiller S., Kunst F., Lenoble P., Meurice G., Sekowska A., Vallenet D., Wang T., Moszer I., Medigue C., Danchin A.
Microbiology 155:1758-1775(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: SEQUENCE REVISION TO 31 AND 204.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
D84432 Genomic DNA. Translation: BAA12476.1.
AL009126 Genomic DNA. Translation: CAB14477.2.
PIRD69953.
RefSeqNP_390413.2. NC_000964.3.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING224308.BSU25350.

Proteomic databases

PaxDbP54469.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCAB14477; CAB14477; BSU25350.
GeneID937867.
KEGGbsu:BSU25350.
PATRIC18976908. VBIBacSub10457_2643.

Organism-specific databases

GenoListBSU25350.

Phylogenomic databases

eggNOGNOG07111.
HOGENOMHOG000097016.
KOK06438.
OrthoDBEOG6X9MJS.
PhylomeDBP54469.

Enzyme and pathway databases

BioCycBSUB:BSU25350-MONOMER.

Family and domain databases

InterProIPR010690. YqfD.
[Graphical view]
PfamPF06898. YqfD. 1 hit.
[Graphical view]
PIRSFPIRSF029895. SpoIV. 1 hit.
TIGRFAMsTIGR02876. spore_yqfD. 1 hit.
ProtoNetSearch...

Entry information

Entry nameYQFD_BACSU
AccessionPrimary (citable) accession number: P54469
Entry history
Integrated into UniProtKB/Swiss-Prot: October 1, 1996
Last sequence update: July 7, 2009
Last modified: July 9, 2014
This is version 80 of the entry and version 2 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

Bacillus subtilis

Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList