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P54396 (YPMB_BACSU) Reviewed, UniProtKB/Swiss-Prot

Last modified January 25, 2012. Version 71. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
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to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Uncharacterized protein ypmB
Gene names
Name:ypmB
Ordered Locus Names:BSU22380
OrganismBacillus subtilis
Taxonomic identifier1423 [NCBI]
Taxonomic lineageBacteria › Firmicutes › Bacillales › Bacillaceae › Bacillus

Protein attributes

Sequence length161 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Subcellular location

Membrane; Single-pass membrane protein Potential.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 161161Uncharacterized protein ypmB
PRO_0000049710

Regions

Transmembrane6 – 2621Helical; Potential

Secondary structure

1 .................... 161
Helix Strand Turn

Details...

Sequences

Sequence LengthMass (Da)Tools
P54396 [UniParc].

Last modified October 1, 1996. Version 1.
Checksum: 014004D60DDDAC9F

FASTA16117,896
        10         20         30         40         50         60 
MRKKALIFTV IFGIIFLAVL LVSASIYKSA MAQKEEGHEA AAAEAKKETD LAHVDQVETF 

        70         80         90        100        110        120 
VGKEKYYVVK GTDKKGTALY VWVPADKKAK ILSKEAKEGI SEDKAAKIIK DEGLVSKQKE 

       130        140        150        160 
VHLAREGNVL LWEVTYLDKE GQYSLSYVDF TTGKILKNIT P

« Hide

References

« Hide 'large scale' references
[1]"Sequence analysis of the Bacillus subtilis chromosome region between the serA and kdg loci cloned in a yeast artificial chromosome."
Sorokin A.V., Azevedo V., Zumstein E., Galleron N., Ehrlich S.D., Serror P.
Microbiology 142:2005-2016(1996) [PubMed: 8760912] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
Strain: 168 / Marburg / ATCC 6051 / DSM 10 / JCM 1465 / NBRC 13719 / NCIMB 3610 / VKM B-501.
[2]"The complete genome sequence of the Gram-positive bacterium Bacillus subtilis."
Kunst F., Ogasawara N., Moszer I., Albertini A.M., Alloni G., Azevedo V., Bertero M.G., Bessieres P., Bolotin A., Borchert S., Borriss R., Boursier L., Brans A., Braun M., Brignell S.C., Bron S., Brouillet S., Bruschi C.V. expand/collapse author list , Caldwell B., Capuano V., Carter N.M., Choi S.-K., Codani J.-J., Connerton I.F., Cummings N.J., Daniel R.A., Denizot F., Devine K.M., Duesterhoeft A., Ehrlich S.D., Emmerson P.T., Entian K.-D., Errington J., Fabret C., Ferrari E., Foulger D., Fritz C., Fujita M., Fujita Y., Fuma S., Galizzi A., Galleron N., Ghim S.-Y., Glaser P., Goffeau A., Golightly E.J., Grandi G., Guiseppi G., Guy B.J., Haga K., Haiech J., Harwood C.R., Henaut A., Hilbert H., Holsappel S., Hosono S., Hullo M.-F., Itaya M., Jones L.-M., Joris B., Karamata D., Kasahara Y., Klaerr-Blanchard M., Klein C., Kobayashi Y., Koetter P., Koningstein G., Krogh S., Kumano M., Kurita K., Lapidus A., Lardinois S., Lauber J., Lazarevic V., Lee S.-M., Levine A., Liu H., Masuda S., Mauel C., Medigue C., Medina N., Mellado R.P., Mizuno M., Moestl D., Nakai S., Noback M., Noone D., O'Reilly M., Ogawa K., Ogiwara A., Oudega B., Park S.-H., Parro V., Pohl T.M., Portetelle D., Porwollik S., Prescott A.M., Presecan E., Pujic P., Purnelle B., Rapoport G., Rey M., Reynolds S., Rieger M., Rivolta C., Rocha E., Roche B., Rose M., Sadaie Y., Sato T., Scanlan E., Schleich S., Schroeter R., Scoffone F., Sekiguchi J., Sekowska A., Seror S.J., Serror P., Shin B.-S., Soldo B., Sorokin A., Tacconi E., Takagi T., Takahashi H., Takemaru K., Takeuchi M., Tamakoshi A., Tanaka T., Terpstra P., Tognoni A., Tosato V., Uchiyama S., Vandenbol M., Vannier F., Vassarotti A., Viari A., Wambutt R., Wedler E., Wedler H., Weitzenegger T., Winters P., Wipat A., Yamamoto H., Yamane K., Yasumoto K., Yata K., Yoshida K., Yoshikawa H.-F., Zumstein E., Yoshikawa H., Danchin A.
Nature 390:249-256(1997) [PubMed: 9384377] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 168.
[3]"X-ray crystal structure of ypmB protein from Bacillus subtilis."
Midwest center for structural genomics (MCSG)
Submitted (MAY-2006) to the PDB data bank
Cited for: X-RAY CRYSTALLOGRAPHY (1.74 ANGSTROMS) OF 29-161.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		L47709 Genomic DNA. Translation: AAB38453.1.
AL009126 Genomic DNA. Translation: CAB14154.1.
PIRF69938.
RefSeqNP_390119.1. NC_000964.3.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
2GU3X-ray1.74A29-161[»]
ProteinModelPortalP54396.
SMRP54396. Positions 49-161.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaEBBACT00000001499; EBBACP00000001499; EBBACG00000001497.
GeneID939035.
GenomeReviewsGene locus BSU22380 in contig AL009126_GR.
KEGGbsu:BSU22380.
NMPDRfig|224308.1.peg.2242.
PATRIC18976285. VBIBacSub10457_2333.

Organism-specific databases

GenoListBSU22380.

Phylogenomic databases

GeneTreeEBGT00050000002419.
HOGENOMHBG532907.
OMALWEVTYL.
ProtClustDBCLSK887494.

Enzyme and pathway databases

BioCycBSUB:BSU22380-MONOMER.

Family and domain databases

InterProIPR015801. Cu_amine_oxidase_N2/3.
IPR005075. Pept_M4_propep_PepSY.
[Graphical view]
Gene3DG3DSA:3.10.450.40. CuNH_oxidase. 2 hits.
PfamPF03413. PepSY. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameYPMB_BACSU
AccessionPrimary (citable) accession number: P54396
Entry history
Integrated into UniProtKB/Swiss-Prot: October 1, 1996
Last sequence update: October 1, 1996
Last modified: January 25, 2012
This is version 71 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

Bacillus subtilis

Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList

PDB cross-references

Index of Protein Data Bank (PDB) cross-references

to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·Documents