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Protein

Phage-like element PBSX protein XkdW

Gene

xkdW

Organism
Bacillus subtilis (strain 168)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciBSUB:BSU12760-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Phage-like element PBSX protein XkdW
Gene namesi
Name:xkdW
Ordered Locus Names:BSU12760
OrganismiBacillus subtilis (strain 168)
Taxonomic identifieri224308 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
Proteomesi
  • UP000001570 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 109109Phage-like element PBSX protein XkdWPRO_0000066035Add
BLAST

Proteomic databases

PaxDbiP54342.

Interactioni

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100007076.

Structurei

Secondary structure

1
109
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi3 – 108Combined sources
Turni17 – 193Combined sources
Beta strandi20 – 245Combined sources
Beta strandi29 – 346Combined sources
Beta strandi36 – 383Combined sources
Helixi43 – 5513Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2HG7NMR-A1-102[»]
ProteinModelPortaliP54342.
SMRiP54342. Positions 1-60.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP54342.

Family & Domainsi

Sequence similaritiesi

To B.subtilis YqcC.Curated

Phylogenomic databases

HOGENOMiHOG000011108.
OMAiAWWEESK.
OrthoDBiEOG6P33C6.

Family and domain databases

Gene3Di3.30.56.60. 1 hit.
InterProiIPR019094. Phage_SP-beta_YorD.
[Graphical view]
PfamiPF09636. XkdW. 1 hit.
[Graphical view]
SUPFAMiSSF159865. SSF159865. 1 hit.

Sequencei

Sequence statusi: Complete.

P54342-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MILYDAIMYK YPNAVSRKDF ELRNDGNGSY IEKWNLRAPL PTQAELETWW
60 70 80 90 100
EELQKNPPYE PPDQVELLAQ ELSQEKLARK QLEELNKTLG NELSDIKLSL

LSLKGDYAE
Length:109
Mass (Da):12,728
Last modified:October 1, 1996 - v1
Checksum:iFAE2A42440F06337
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z70177 Genomic DNA. Translation: CAA94044.1.
AL009126 Genomic DNA. Translation: CAB13133.1.
PIRiF69733.
RefSeqiNP_389159.1. NC_000964.3.
WP_003232660.1. NZ_JNCM01000035.1.

Genome annotation databases

EnsemblBacteriaiCAB13133; CAB13133; BSU12760.
GeneIDi936237.
KEGGibsu:BSU12760.
PATRICi18974303. VBIBacSub10457_1344.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z70177 Genomic DNA. Translation: CAA94044.1.
AL009126 Genomic DNA. Translation: CAB13133.1.
PIRiF69733.
RefSeqiNP_389159.1. NC_000964.3.
WP_003232660.1. NZ_JNCM01000035.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2HG7NMR-A1-102[»]
ProteinModelPortaliP54342.
SMRiP54342. Positions 1-60.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100007076.

Proteomic databases

PaxDbiP54342.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAB13133; CAB13133; BSU12760.
GeneIDi936237.
KEGGibsu:BSU12760.
PATRICi18974303. VBIBacSub10457_1344.

Phylogenomic databases

HOGENOMiHOG000011108.
OMAiAWWEESK.
OrthoDBiEOG6P33C6.

Enzyme and pathway databases

BioCyciBSUB:BSU12760-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP54342.

Family and domain databases

Gene3Di3.30.56.60. 1 hit.
InterProiIPR019094. Phage_SP-beta_YorD.
[Graphical view]
PfamiPF09636. XkdW. 1 hit.
[Graphical view]
SUPFAMiSSF159865. SSF159865. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Krogh S., O'Reilly M., Nolan N., Devine K.M.
    Submitted (MAR-1996) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: 168.
  2. "The complete genome sequence of the Gram-positive bacterium Bacillus subtilis."
    Kunst F., Ogasawara N., Moszer I., Albertini A.M., Alloni G., Azevedo V., Bertero M.G., Bessieres P., Bolotin A., Borchert S., Borriss R., Boursier L., Brans A., Braun M., Brignell S.C., Bron S., Brouillet S., Bruschi C.V.
    , Caldwell B., Capuano V., Carter N.M., Choi S.-K., Codani J.-J., Connerton I.F., Cummings N.J., Daniel R.A., Denizot F., Devine K.M., Duesterhoeft A., Ehrlich S.D., Emmerson P.T., Entian K.-D., Errington J., Fabret C., Ferrari E., Foulger D., Fritz C., Fujita M., Fujita Y., Fuma S., Galizzi A., Galleron N., Ghim S.-Y., Glaser P., Goffeau A., Golightly E.J., Grandi G., Guiseppi G., Guy B.J., Haga K., Haiech J., Harwood C.R., Henaut A., Hilbert H., Holsappel S., Hosono S., Hullo M.-F., Itaya M., Jones L.-M., Joris B., Karamata D., Kasahara Y., Klaerr-Blanchard M., Klein C., Kobayashi Y., Koetter P., Koningstein G., Krogh S., Kumano M., Kurita K., Lapidus A., Lardinois S., Lauber J., Lazarevic V., Lee S.-M., Levine A., Liu H., Masuda S., Mauel C., Medigue C., Medina N., Mellado R.P., Mizuno M., Moestl D., Nakai S., Noback M., Noone D., O'Reilly M., Ogawa K., Ogiwara A., Oudega B., Park S.-H., Parro V., Pohl T.M., Portetelle D., Porwollik S., Prescott A.M., Presecan E., Pujic P., Purnelle B., Rapoport G., Rey M., Reynolds S., Rieger M., Rivolta C., Rocha E., Roche B., Rose M., Sadaie Y., Sato T., Scanlan E., Schleich S., Schroeter R., Scoffone F., Sekiguchi J., Sekowska A., Seror S.J., Serror P., Shin B.-S., Soldo B., Sorokin A., Tacconi E., Takagi T., Takahashi H., Takemaru K., Takeuchi M., Tamakoshi A., Tanaka T., Terpstra P., Tognoni A., Tosato V., Uchiyama S., Vandenbol M., Vannier F., Vassarotti A., Viari A., Wambutt R., Wedler E., Wedler H., Weitzenegger T., Winters P., Wipat A., Yamamoto H., Yamane K., Yasumoto K., Yata K., Yoshida K., Yoshikawa H.-F., Zumstein E., Yoshikawa H., Danchin A.
    Nature 390:249-256(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 168.

Entry informationi

Entry nameiXKDW_BACSU
AccessioniPrimary (citable) accession number: P54342
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 1, 1996
Last sequence update: October 1, 1996
Last modified: February 17, 2016
This is version 86 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Bacillus subtilis
    Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.