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Protein

Phage-like element PBSX protein XkdW

Gene

xkdW

Organism
Bacillus subtilis (strain 168)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciBSUB:BSU12760-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Phage-like element PBSX protein XkdW
Gene namesi
Name:xkdW
Ordered Locus Names:BSU12760
OrganismiBacillus subtilis (strain 168)
Taxonomic identifieri224308 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
Proteomesi
  • UP000001570 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 109109Phage-like element PBSX protein XkdWPRO_0000066035Add
BLAST

Proteomic databases

PaxDbiP54342.

Interactioni

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100007076.

Structurei

Secondary structure

1
109
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi3 – 108Combined sources
Turni17 – 193Combined sources
Beta strandi20 – 245Combined sources
Beta strandi29 – 346Combined sources
Beta strandi36 – 383Combined sources
Helixi43 – 5513Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2HG7NMR-A1-102[»]
ProteinModelPortaliP54342.
SMRiP54342. Positions 1-60.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP54342.

Family & Domainsi

Sequence similaritiesi

To B.subtilis YqcC.Curated

Phylogenomic databases

HOGENOMiHOG000011108.
OMAiAWWEESK.

Family and domain databases

Gene3Di3.30.56.60. 1 hit.
InterProiIPR019094. Phage_SP-beta_YorD.
[Graphical view]
PfamiPF09636. XkdW. 1 hit.
[Graphical view]
SUPFAMiSSF159865. SSF159865. 1 hit.

Sequencei

Sequence statusi: Complete.

P54342-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MILYDAIMYK YPNAVSRKDF ELRNDGNGSY IEKWNLRAPL PTQAELETWW
60 70 80 90 100
EELQKNPPYE PPDQVELLAQ ELSQEKLARK QLEELNKTLG NELSDIKLSL

LSLKGDYAE
Length:109
Mass (Da):12,728
Last modified:October 1, 1996 - v1
Checksum:iFAE2A42440F06337
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z70177 Genomic DNA. Translation: CAA94044.1.
AL009126 Genomic DNA. Translation: CAB13133.1.
PIRiF69733.
RefSeqiNP_389159.1. NC_000964.3.
WP_003232660.1. NZ_JNCM01000035.1.

Genome annotation databases

EnsemblBacteriaiCAB13133; CAB13133; BSU12760.
GeneIDi936237.
KEGGibsu:BSU12760.
PATRICi18974303. VBIBacSub10457_1344.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z70177 Genomic DNA. Translation: CAA94044.1.
AL009126 Genomic DNA. Translation: CAB13133.1.
PIRiF69733.
RefSeqiNP_389159.1. NC_000964.3.
WP_003232660.1. NZ_JNCM01000035.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2HG7NMR-A1-102[»]
ProteinModelPortaliP54342.
SMRiP54342. Positions 1-60.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100007076.

Proteomic databases

PaxDbiP54342.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAB13133; CAB13133; BSU12760.
GeneIDi936237.
KEGGibsu:BSU12760.
PATRICi18974303. VBIBacSub10457_1344.

Phylogenomic databases

HOGENOMiHOG000011108.
OMAiAWWEESK.

Enzyme and pathway databases

BioCyciBSUB:BSU12760-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP54342.

Family and domain databases

Gene3Di3.30.56.60. 1 hit.
InterProiIPR019094. Phage_SP-beta_YorD.
[Graphical view]
PfamiPF09636. XkdW. 1 hit.
[Graphical view]
SUPFAMiSSF159865. SSF159865. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiXKDW_BACSU
AccessioniPrimary (citable) accession number: P54342
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 1, 1996
Last sequence update: October 1, 1996
Last modified: September 7, 2016
This is version 87 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Bacillus subtilis
    Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.