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Protein

Phage-like element PBSX protein XkdH

Gene

xkdH

Organism
Bacillus subtilis (strain 168)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciBSUB:BSU12620-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Phage-like element PBSX protein XkdH
Gene namesi
Name:xkdH
Ordered Locus Names:BSU12620
OrganismiBacillus subtilis (strain 168)
Taxonomic identifieri224308 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
Proteomesi
  • UP000001570 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000660221 – 118Phage-like element PBSX protein XkdHAdd BLAST118

Proteomic databases

PaxDbiP54328
PRIDEiP54328

Interactioni

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100006986

Structurei

Secondary structure

1118
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi9 – 14Combined sources6
Beta strandi17 – 19Combined sources3
Turni25 – 27Combined sources3
Beta strandi36 – 38Combined sources3
Beta strandi44 – 61Combined sources18
Turni62 – 65Combined sources4
Beta strandi66 – 77Combined sources12
Beta strandi87 – 90Combined sources4
Beta strandi93 – 97Combined sources5
Beta strandi102 – 104Combined sources3
Beta strandi107 – 114Combined sources8
Helixi115 – 117Combined sources3

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3F3BX-ray2.50A1-118[»]
ProteinModelPortaliP54328
SMRiP54328
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP54328

Family & Domainsi

Sequence similaritiesi

To B.subtilis YqbH.Curated

Phylogenomic databases

HOGENOMiHOG000011119
OMAiVHFPLSA

Family and domain databases

Gene3Di2.40.10.370, 1 hit
InterProiView protein in InterPro
IPR024556 DUF3599
IPR038667 XkdH-like_sf
PfamiView protein in Pfam
PF12206 DUF3599, 1 hit
ProDomiView protein in ProDom or Entries sharing at least one domain
PD031312 PD031312, 1 hit

Sequencei

Sequence statusi: Complete.

P54328-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSYRQMLIHR CDIYHEAAQA PSAGRFGIPA DRLQPVISYP DTPDEQDVPC
60 70 80 90 100
YFTEKTQQLI QEEPDQTVYH SFLVHFPLSA DIRVNDKIIW ENHKYILKLP
110
KRIRHHHWEV VAVRDESL
Length:118
Mass (Da):13,979
Last modified:October 1, 1996 - v1
Checksum:i0CBBD08F92817A6D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z70177 Genomic DNA Translation: CAA94063.1
AL009126 Genomic DNA Translation: CAB13119.1
PIRiH69731
RefSeqiNP_389144.1, NC_000964.3
WP_009967053.1, NZ_JNCM01000035.1

Genome annotation databases

EnsemblBacteriaiCAB13119; CAB13119; BSU12620
GeneIDi936470
KEGGibsu:BSU12620
PATRICifig|224308.179.peg.1367

Similar proteinsi

Entry informationi

Entry nameiXKDH_BACSU
AccessioniPrimary (citable) accession number: P54328
Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 1, 1996
Last sequence update: October 1, 1996
Last modified: May 23, 2018
This is version 87 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Bacillus subtilis
    Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references

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