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P54145 (AMT1_CAEEL) Reviewed, UniProtKB/Swiss-Prot

Last modified December 14, 2011. Version 68. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Putative ammonium transporter 1
Gene names
Name:amt-1
ORF Names:C05E11.4
OrganismCaenorhabditis elegans
Taxonomic identifier6239 [NCBI]
Taxonomic lineageEukaryota › Metazoa › Nematoda › Chromadorea › Rhabditida › Rhabditoidea › Rhabditidae › Peloderinae › Caenorhabditis

Protein attributes

Sequence length534 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Function

Involved in the uptake of ammonia Probable.

Subcellular location

Membrane; Multi-pass membrane protein Probable.

Sequence similarities

Belongs to the ammonia transporter channel (TC 1.A.11.2) family. [View classification]

Ontologies

Keywords
   Biological processAmmonia transport
Transport
   Cellular componentMembrane
   DomainTransmembrane
Transmembrane helix
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Cellular componentintegral to membrane

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular functionammonium transmembrane transporter activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 534534Putative ammonium transporter 1
PRO_0000139751

Regions

Transmembrane31 – 5121Helical; Potential
Transmembrane69 – 8921Helical; Potential
Transmembrane115 – 13521Helical; Potential
Transmembrane139 – 15921Helical; Potential
Transmembrane184 – 20421Helical; Potential
Transmembrane223 – 24321Helical; Potential
Transmembrane263 – 28321Helical; Potential
Transmembrane291 – 31121Helical; Potential
Transmembrane318 – 33821Helical; Potential
Transmembrane346 – 36621Helical; Potential
Transmembrane401 – 42121Helical; Potential

Sequences

Sequence LengthMass (Da)Tools
P54145 [UniParc].

Last modified October 1, 1996. Version 1.
Checksum: C17CFE44E0DC3D05

FASTA53458,491
        10         20         30         40         50         60 
MTTPTNFTTE IDKLHAEITR LETGFYENVN SFFLCSMALI IFFMQCGFAY LEAGAVRSKN 

        70         80         90        100        110        120 
TTNILIKNLL DSCICIIGYW AIGWALAYGD SGEGVNLFVG HSQFFLSGFS DYPRFFFQYV 

       130        140        150        160        170        180 
FSATAATIVS GAVAERCEFI TYVTYCTVIS TFIYPVLTHW GWTENGWMAK GITSGIIDTK 

       190        200        210        220        230        240 
YDDFAGSGLV HLCGGSISFL AAWIMGPRIG KFPDDEDDES DEILGHSVPF TALGGFILMF 

       250        260        270        280        290        300 
GFLAFNGGSV ASISHAGDGH TVALAMINTI LSGAFAALIY LGVHYYQHGK WTLLLTINAC 

       310        320        330        340        350        360 
LSGMVAACAG CNKMEPWACI WVGLGAGLIY LAFSKLMIRL KIDDPLDAFA VHAGGGFWGL 

       370        380        390        400        410        420 
MSSSIISHGG VAYALADAVS GAKNSGDHLT QAFAQLGWQM ICALAIIAWS LGVMLPIFWI 

       430        440        450        460        470        480 
LKKTGKLRVS EEVEINGLDV FKHGEMAYPL RAYGHGWHDF ERANKIQAFS AKITVGEGKN 

       490        500        510        520        530 
TRIMKIHPEM SIEQLASVYD RSGNIIPMPK KSRTLFTNSA ERKMSQMMYD ENKM

« Hide

References

[1]"Genome sequence of the nematode C. elegans: a platform for investigating biology."
The C. elegans sequencing consortium
Science 282:2012-2018(1998) [PubMed: 9851916] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Bristol N2.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		FO080371 Genomic DNA. Translation: CCD63261.1.
PIRT15414.
RefSeqNP_508784.1. NM_076383.2.
UniGeneCel.11453.

3D structure databases

ProteinModelPortalP54145.
SMRP54145. Positions 27-449.
ModBaseSearch...

Protein-protein interaction databases

STRINGP54145.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaC05E11.4; C05E11.4; C05E11.4.
GeneID180729.
KEGGcel:C05E11.4.
NMPDRfig|6239.3.peg.23126.
UCSCC05E11.4. c. elegans.

Organism-specific databases

CTD180729.
WormBaseC05E11.4; CE06770; WBGene00000133; amt-1.

Phylogenomic databases

eggNOGmeNOG23354.
GeneTreeEMGT00050000009536.
HOGENOMHBG677626.
InParanoidP54145.
OMAIISHGGV.
PhylomeDBP54145.

Gene expression databases

ArrayExpressP54145.

Family and domain databases

InterProIPR001905. Ammonium_transpt.
IPR018047. Ammonium_transpt_CS.
IPR024041. NH4_transpt_AmtB-like.
[Graphical view]
Gene3DG3DSA:1.10.3430.10. G3DSA:1.10.3430.10. 1 hit.
PANTHERPTHR11730. Ammonium_transpt. 1 hit.
PfamPF00909. Ammonium_transp. 1 hit.
[Graphical view]
SUPFAMSSF111352. RH_like_transpt. 1 hit.
TIGRFAMsTIGR00836. Amt. 1 hit.
PROSITEPS01219. AMMONIUM_TRANSP. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio910672.

Entry information

Entry nameAMT1_CAEEL
AccessionPrimary (citable) accession number: P54145
Entry history
Integrated into UniProtKB/Swiss-Prot: October 1, 1996
Last sequence update: October 1, 1996
Last modified: December 14, 2011
This is version 68 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programCaenorhabditis annotation project

Relevant documents

Caenorhabditis elegans

Caenorhabditis elegans: entries, gene names and cross-references to WormPep

SIMILARITY comments

Index of protein domains and families

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