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Protein

50S ribosomal protein L10

Gene

rpl10

Organism
Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors.Curated

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L10UniRule annotation
Alternative name(s):
Acidic ribosomal protein P0 homologUniRule annotation
MjaL10
Gene namesi
Name:rpl10UniRule annotation
Synonyms:rplP0UniRule annotation
Ordered Locus Names:MJ0509
OrganismiMethanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii)
Taxonomic identifieri243232 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaMethanococciMethanococcalesMethanocaldococcaceaeMethanocaldococcus
ProteomesiUP000000805 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 33833850S ribosomal protein L10PRO_0000154793Add
BLAST

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit. Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Forms a heptameric L10(L12)2(L12)2(L12)2 complex, where L10 forms an elongated spine to which the L12 dimers bind in a sequential fashion (Probable).Curated

Protein-protein interaction databases

STRINGi243232.MJ0509.

Structurei

Secondary structure

1
338
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi11 – 2616Combined sources
Beta strandi27 – 348Combined sources
Helixi40 – 5011Combined sources
Turni51 – 533Combined sources
Beta strandi54 – 585Combined sources
Helixi61 – 7414Combined sources
Helixi78 – 869Combined sources
Beta strandi89 – 9810Combined sources
Helixi100 – 10910Combined sources
Beta strandi112 – 1143Combined sources
Beta strandi126 – 1283Combined sources
Beta strandi130 – 1323Combined sources
Helixi140 – 1467Combined sources
Beta strandi151 – 1544Combined sources
Beta strandi157 – 1604Combined sources
Beta strandi164 – 1674Combined sources
Helixi175 – 1839Combined sources
Beta strandi189 – 1924Combined sources
Beta strandi194 – 2007Combined sources
Beta strandi203 – 2053Combined sources
Helixi207 – 2137Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3JSYX-ray1.60A/B10-221[»]
ProteinModelPortaliP54049.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP54049.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L10P family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0244.
InParanoidiP54049.
KOiK02864.
OMAiNYVERGA.
PhylomeDBiP54049.

Family and domain databases

Gene3Di1.10.10.380. 2 hits.
HAMAPiMF_00280. Ribosomal_L10_arch.
InterProiIPR022909. 50S_L10_arch.
IPR013522. Ribosomal_L10_N_arc.
IPR001790. Ribosomal_L10P.
[Graphical view]
PfamiPF00466. Ribosomal_L10. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P54049-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
METKVKAHVA PWKIEEVKTL KGLIKSKPVV AIVDMMDVPA PQLQEIRDKI
60 70 80 90 100
RDKVKLRMSR NTLIIRALKE AAEELNNPKL AELANYVERG AAILVTDMNP
110 120 130 140 150
FKLYKLLEEN KSPAPVRGGQ IAPCDIKVEK GSTGMPPGPF LGELKSVGIP
160 170 180 190 200
AAIEKGKIAI KEDKVVVKKG EVVSPKLAAV LDRLGIKPIK VGLNILAVYE
210 220 230 240 250
DGIIYTPDVL KVDEEKLLAD IQAAYQNAFN LAFNTAYPAK EVLPFLIQKA
260 270 280 290 300
FINARALSVE TAFVTKETAG DILAKAQAQA LALASKLPDE ALDEDIKAKL
310 320 330
SSVEVSAAPA AEEEKEEEKK EEEKKEEDTG AAGLALLF
Length:338
Mass (Da):36,751
Last modified:July 15, 1998 - v2
Checksum:i63A6AFD357E3052D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L77117 Genomic DNA. Translation: AAB98499.1.
RefSeqiNP_247485.1. NC_000909.1.
WP_010870010.1. NC_000909.1.

Genome annotation databases

EnsemblBacteriaiAAB98499; AAB98499; MJ_0509.
GeneIDi1451371.
KEGGimja:MJ_0509.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L77117 Genomic DNA. Translation: AAB98499.1.
RefSeqiNP_247485.1. NC_000909.1.
WP_010870010.1. NC_000909.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3JSYX-ray1.60A/B10-221[»]
ProteinModelPortaliP54049.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi243232.MJ0509.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAB98499; AAB98499; MJ_0509.
GeneIDi1451371.
KEGGimja:MJ_0509.

Phylogenomic databases

eggNOGiCOG0244.
InParanoidiP54049.
KOiK02864.
OMAiNYVERGA.
PhylomeDBiP54049.

Miscellaneous databases

EvolutionaryTraceiP54049.

Family and domain databases

Gene3Di1.10.10.380. 2 hits.
HAMAPiMF_00280. Ribosomal_L10_arch.
InterProiIPR022909. 50S_L10_arch.
IPR013522. Ribosomal_L10_N_arc.
IPR001790. Ribosomal_L10P.
[Graphical view]
PfamiPF00466. Ribosomal_L10. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440.
  2. "Structure of a two-domain N-terminal fragment of ribosomal protein L10 from Methanococcus jannaschii reveals a specific piece of the archaeal ribosomal stalk."
    Kravchenko O., Mitroshin I., Nikonov S., Piendl W., Garber M.
    J. Mol. Biol. 399:214-220(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (1.6 ANGSTROMS) OF 10-221.

Entry informationi

Entry nameiRL10_METJA
AccessioniPrimary (citable) accession number: P54049
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 1, 1996
Last sequence update: July 15, 1998
Last modified: May 27, 2015
This is version 85 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Methanococcus jannaschii
    Methanococcus jannaschii: entries and gene names
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. Ribosomal proteins
    Ribosomal proteins families and list of entries
  4. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.