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Protein

50S ribosomal protein L12

Gene

rpl12

Organism
Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L12UniRule annotation
Gene namesi
Name:rpl12UniRule annotation
Ordered Locus Names:MJ0508
OrganismiMethanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii)
Taxonomic identifieri243232 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaMethanococciMethanococcalesMethanocaldococcaceaeMethanocaldococcus
Proteomesi
  • UP000000805 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 10210250S ribosomal protein L12PRO_0000157630Add
BLAST

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit. Homodimer, it forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Forms a heptameric L10(L12)2(L12)2(L12)2 complex, where L10 forms an elongated spine to which the L12 dimers bind in a sequential fashion.UniRule annotation

Protein-protein interaction databases

STRINGi243232.MJ_0508.

Structurei

3D structure databases

ProteinModelPortaliP54048.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L12P family.UniRule annotation

Phylogenomic databases

eggNOGiarCOG04287. Archaea.
COG2058. LUCA.
InParanoidiP54048.
KOiK02869.
OMAiEYIYAAM.

Family and domain databases

HAMAPiMF_01478. Ribosomal_L12_arch. 1 hit.
InterProiIPR027534. Ribosomal_L12.
IPR022295. Ribosomal_L12_arc.
[Graphical view]
TIGRFAMsiTIGR03685. ribo_P1_arch. 1 hit.

Sequencei

Sequence statusi: Complete.

P54048-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEYIYAALLL HSAGKEITED AIKAVLSAAG VEVDDARVKA LVAGLEGVDI
60 70 80 90 100
EEAIANAAMP VAAAPAAAAP AAAAEEKKEE EKKEEKKEED TAAVAGLAAL

FG
Length:102
Mass (Da):10,363
Last modified:October 1, 1996 - v1
Checksum:i35306FFDE967C52C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L77117 Genomic DNA. Translation: AAB98498.1.
PIRiD64363.

Genome annotation databases

EnsemblBacteriaiAAB98498; AAB98498; MJ_0508.
KEGGimja:MJ_0508.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L77117 Genomic DNA. Translation: AAB98498.1.
PIRiD64363.

3D structure databases

ProteinModelPortaliP54048.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi243232.MJ_0508.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAB98498; AAB98498; MJ_0508.
KEGGimja:MJ_0508.

Phylogenomic databases

eggNOGiarCOG04287. Archaea.
COG2058. LUCA.
InParanoidiP54048.
KOiK02869.
OMAiEYIYAAM.

Family and domain databases

HAMAPiMF_01478. Ribosomal_L12_arch. 1 hit.
InterProiIPR027534. Ribosomal_L12.
IPR022295. Ribosomal_L12_arc.
[Graphical view]
TIGRFAMsiTIGR03685. ribo_P1_arch. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiRL12_METJA
AccessioniPrimary (citable) accession number: P54048
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 1, 1996
Last sequence update: October 1, 1996
Last modified: September 7, 2016
This is version 81 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Methanococcus jannaschii
    Methanococcus jannaschii: entries and gene names
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.