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P53921

- YNM2_YEAST

UniProt

P53921 - YNM2_YEAST

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Protein

Putative mitochondrial ribosomal protein YNL122C

Gene

YNL122C

Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  1. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

BioCyciYEAST:G3O-33143-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Putative mitochondrial ribosomal protein YNL122C
Gene namesi
Ordered Locus Names:YNL122C
ORF Names:N1901
OrganismiSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Taxonomic identifieri559292 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces
ProteomesiUP000002311: Chromosome XIV

Organism-specific databases

CYGDiYNL122c.
SGDiS000005066. YNL122C.

Subcellular locationi

Mitochondrion 2 Publications

GO - Cellular componenti

  1. mitochondrion Source: SGD
  2. ribosome Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Mitochondrion

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini? – 115Putative mitochondrial ribosomal protein YNL122CPRO_0000203430
Transit peptidei1 – ?MitochondrionSequence Analysis

Expressioni

Gene expression databases

GenevestigatoriP53921.

Interactioni

Protein-protein interaction databases

BioGridi35705. 42 interactions.
DIPiDIP-2009N.
IntActiP53921. 1 interaction.
MINTiMINT-396727.
STRINGi4932.YNL122C.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1VW4electron microscopy3.20Z1-115[»]
ProteinModelPortaliP53921.
SMRiP53921. Positions 54-115.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L35P family.Curated

Keywords - Domaini

Transit peptide

Phylogenomic databases

eggNOGiCOG0291.
HOGENOMiHOG000248549.
InParanoidiP53921.
OMAiADSTHMH.
OrthoDBiEOG73Z36X.

Family and domain databases

InterProiIPR021137. Ribosomal_L35.
[Graphical view]
PfamiPF01632. Ribosomal_L35p. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P53921-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MKISLHNKRQ RGDQNQNMSV FNVLKPLLKG SNSFKVKLNG FLFNNVSTIT
60 70 80 90 100
IRTLMKTHKG TAKRWRRTGN TFKRGIAGRK HGNIGWSHRS LKALTGRKIA
110
HPAYSKHLKR LLPYH
Length:115
Mass (Da):13,244
Last modified:October 1, 1996 - v1
Checksum:iB6C9DC84CE1EB016
GO

Natural variant

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Natural varianti11 – 111R → Q in strain: V1-09 and YJM339. 1 Publication
Natural varianti31 – 311S → P in strain: YJM269, YJM270, YJM326 and YJM1129. 1 Publication

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
EF125216 Genomic DNA. Translation: ABN58536.1.
EF125217 Genomic DNA. Translation: ABN58545.1.
EF125218 Genomic DNA. Translation: ABN58554.1.
EF125219 Genomic DNA. Translation: ABN58563.1.
EF125220 Genomic DNA. Translation: ABN58572.1.
EF125221 Genomic DNA. Translation: ABN58581.1.
EF125222 Genomic DNA. Translation: ABN58590.1.
EF125223 Genomic DNA. Translation: ABN58599.1.
EF125224 Genomic DNA. Translation: ABN58608.1.
EF125225 Genomic DNA. Translation: ABN58617.1.
EF125226 Genomic DNA. Translation: ABN58626.1.
EF125228 Genomic DNA. Translation: ABN58644.1.
Z69382 Genomic DNA. Translation: CAA93385.1.
Z71398 Genomic DNA. Translation: CAA96003.1.
AY692589 Genomic DNA. Translation: AAT92608.1.
BK006947 Genomic DNA. Translation: DAA10427.1.
PIRiS63063.
RefSeqiNP_014277.1. NM_001182960.1.

Genome annotation databases

EnsemblFungiiYNL122C; YNL122C; YNL122C.
GeneIDi855601.
KEGGisce:YNL122C.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
EF125216 Genomic DNA. Translation: ABN58536.1 .
EF125217 Genomic DNA. Translation: ABN58545.1 .
EF125218 Genomic DNA. Translation: ABN58554.1 .
EF125219 Genomic DNA. Translation: ABN58563.1 .
EF125220 Genomic DNA. Translation: ABN58572.1 .
EF125221 Genomic DNA. Translation: ABN58581.1 .
EF125222 Genomic DNA. Translation: ABN58590.1 .
EF125223 Genomic DNA. Translation: ABN58599.1 .
EF125224 Genomic DNA. Translation: ABN58608.1 .
EF125225 Genomic DNA. Translation: ABN58617.1 .
EF125226 Genomic DNA. Translation: ABN58626.1 .
EF125228 Genomic DNA. Translation: ABN58644.1 .
Z69382 Genomic DNA. Translation: CAA93385.1 .
Z71398 Genomic DNA. Translation: CAA96003.1 .
AY692589 Genomic DNA. Translation: AAT92608.1 .
BK006947 Genomic DNA. Translation: DAA10427.1 .
PIRi S63063.
RefSeqi NP_014277.1. NM_001182960.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
1VW4 electron microscopy 3.20 Z 1-115 [» ]
ProteinModelPortali P53921.
SMRi P53921. Positions 54-115.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

BioGridi 35705. 42 interactions.
DIPi DIP-2009N.
IntActi P53921. 1 interaction.
MINTi MINT-396727.
STRINGi 4932.YNL122C.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblFungii YNL122C ; YNL122C ; YNL122C .
GeneIDi 855601.
KEGGi sce:YNL122C.

Organism-specific databases

CYGDi YNL122c.
SGDi S000005066. YNL122C.

Phylogenomic databases

eggNOGi COG0291.
HOGENOMi HOG000248549.
InParanoidi P53921.
OMAi ADSTHMH.
OrthoDBi EOG73Z36X.

Enzyme and pathway databases

BioCyci YEAST:G3O-33143-MONOMER.

Miscellaneous databases

NextBioi 979765.

Gene expression databases

Genevestigatori P53921.

Family and domain databases

InterProi IPR021137. Ribosomal_L35.
[Graphical view ]
Pfami PF01632. Ribosomal_L35p. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Sequential elimination of major-effect contributors identifies additional quantitative trait loci conditioning high-temperature growth in yeast."
    Sinha H., David L., Pascon R.C., Clauder-Muenster S., Krishnakumar S., Nguyen M., Shi G., Dean J., Davis R.W., Oefner P.J., McCusker J.H., Steinmetz L.M.
    Genetics 180:1661-1670(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA], VARIANTS GLN-11 AND PRO-31.
    Strain: ATCC 200060 / W303, S103, SK1, V1-09, YJM 1129, YJM 269, YJM 270, YJM 320, YJM 326, YJM 339, YJM 627 and YJM230.
  2. "The DNA sequence of cosmid 14-13b from chromosome XIV of Saccharomyces cerevisiae reveals an unusually high number of overlapping open reading frames."
    de Antoni A., D'Angelo M., Dal Pero F., Sartorello F., Pandolfo D., Pallavicini A., Lanfranchi G., Valle G.
    Yeast 13:261-266(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  3. "The nucleotide sequence of Saccharomyces cerevisiae chromosome XIV and its evolutionary implications."
    Philippsen P., Kleine K., Poehlmann R., Duesterhoeft A., Hamberg K., Hegemann J.H., Obermaier B., Urrestarazu L.A., Aert R., Albermann K., Altmann R., Andre B., Baladron V., Ballesta J.P.G., Becam A.-M., Beinhauer J.D., Boskovic J., Buitrago M.J.
    , Bussereau F., Coster F., Crouzet M., D'Angelo M., Dal Pero F., De Antoni A., del Rey F., Doignon F., Domdey H., Dubois E., Fiedler T.A., Fleig U., Floeth M., Fritz C., Gaillardin C., Garcia-Cantalejo J.M., Glansdorff N., Goffeau A., Gueldener U., Herbert C.J., Heumann K., Heuss-Neitzel D., Hilbert H., Hinni K., Iraqui Houssaini I., Jacquet M., Jimenez A., Jonniaux J.-L., Karpfinger-Hartl L., Lanfranchi G., Lepingle A., Levesque H., Lyck R., Maftahi M., Mallet L., Maurer C.T.C., Messenguy F., Mewes H.-W., Moestl D., Nasr F., Nicaud J.-M., Niedenthal R.K., Pandolfo D., Pierard A., Piravandi E., Planta R.J., Pohl T.M., Purnelle B., Rebischung C., Remacha M.A., Revuelta J.L., Rinke M., Saiz J.E., Sartorello F., Scherens B., Sen-Gupta M., Soler-Mira A., Urbanus J.H.M., Valle G., Van Dyck L., Verhasselt P., Vierendeels F., Vissers S., Voet M., Volckaert G., Wach A., Wambutt R., Wedler H., Zollner A., Hani J.
    Nature 387:93-98(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 204508 / S288c.
  4. Cited for: GENOME REANNOTATION.
    Strain: ATCC 204508 / S288c.
  5. Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: ATCC 204508 / S288c.
  6. Cited for: SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS].
  7. "Assessing systems properties of yeast mitochondria through an interaction map of the organelle."
    Perocchi F., Jensen L.J., Gagneur J., Ahting U., von Mering C., Bork P., Prokisch H., Steinmetz L.M.
    PLoS Genet. 2:E170-E170(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS].

Entry informationi

Entry nameiYNM2_YEAST
AccessioniPrimary (citable) accession number: P53921
Secondary accession number(s): B0KZR4
, B0KZU1, B0KZY6, D6W161
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 1, 1996
Last sequence update: October 1, 1996
Last modified: October 29, 2014
This is version 92 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families
  4. Yeast
    Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD
  5. Yeast chromosome XIV
    Yeast (Saccharomyces cerevisiae) chromosome XIV: entries and gene names

External Data

Dasty 3