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Protein

Putative mitochondrial ribosomal protein YNL122C

Gene

YNL122C

Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  • structural constituent of ribosome Source: SGD

GO - Biological processi

  • mitochondrial translation Source: SGD
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

BioCyciYEAST:G3O-33143-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Putative mitochondrial ribosomal protein YNL122C
Gene namesi
Ordered Locus Names:YNL122C
ORF Names:N1901
OrganismiSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Taxonomic identifieri559292 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces
Proteomesi
  • UP000002311 Componenti: Chromosome XIV

Organism-specific databases

EuPathDBiFungiDB:YNL122C.
SGDiS000005066. YNL122C.

Subcellular locationi

GO - Cellular componenti

  • mitochondrial large ribosomal subunit Source: SGD
  • mitochondrion Source: SGD
Complete GO annotation...

Keywords - Cellular componenti

Mitochondrion

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_0000203430? – 115Putative mitochondrial ribosomal protein YNL122C
Transit peptidei1 – ?MitochondrionSequence analysis

Proteomic databases

PRIDEiP53921.

Interactioni

Protein-protein interaction databases

BioGridi35705. 43 interactors.
DIPiDIP-2009N.
IntActiP53921. 1 interactor.
MINTiMINT-396727.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3J6Belectron microscopy3.20Z1-115[»]
ProteinModelPortaliP53921.
SMRiP53921.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L35P family.Curated

Keywords - Domaini

Transit peptide

Phylogenomic databases

HOGENOMiHOG000248549.
InParanoidiP53921.
OrthoDBiEOG092C5Q5V.

Family and domain databases

InterProiIPR021137. Ribosomal_L35.
[Graphical view]
PfamiPF01632. Ribosomal_L35p. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P53921-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKISLHNKRQ RGDQNQNMSV FNVLKPLLKG SNSFKVKLNG FLFNNVSTIT
60 70 80 90 100
IRTLMKTHKG TAKRWRRTGN TFKRGIAGRK HGNIGWSHRS LKALTGRKIA
110
HPAYSKHLKR LLPYH
Length:115
Mass (Da):13,244
Last modified:October 1, 1996 - v1
Checksum:iB6C9DC84CE1EB016
GO

Natural variant

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Natural varianti11R → Q in strain: V1-09 and YJM339. 1 Publication1
Natural varianti31S → P in strain: YJM269, YJM270, YJM326 and YJM1129. 1 Publication1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
EF125216 Genomic DNA. Translation: ABN58536.1.
EF125217 Genomic DNA. Translation: ABN58545.1.
EF125218 Genomic DNA. Translation: ABN58554.1.
EF125219 Genomic DNA. Translation: ABN58563.1.
EF125220 Genomic DNA. Translation: ABN58572.1.
EF125221 Genomic DNA. Translation: ABN58581.1.
EF125222 Genomic DNA. Translation: ABN58590.1.
EF125223 Genomic DNA. Translation: ABN58599.1.
EF125224 Genomic DNA. Translation: ABN58608.1.
EF125225 Genomic DNA. Translation: ABN58617.1.
EF125226 Genomic DNA. Translation: ABN58626.1.
EF125228 Genomic DNA. Translation: ABN58644.1.
Z69382 Genomic DNA. Translation: CAA93385.1.
Z71398 Genomic DNA. Translation: CAA96003.1.
AY692589 Genomic DNA. Translation: AAT92608.1.
BK006947 Genomic DNA. Translation: DAA10427.1.
PIRiS63063.
RefSeqiNP_014277.1. NM_001182960.1.

Genome annotation databases

EnsemblFungiiYNL122C; YNL122C; YNL122C.
GeneIDi855601.
KEGGisce:YNL122C.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
EF125216 Genomic DNA. Translation: ABN58536.1.
EF125217 Genomic DNA. Translation: ABN58545.1.
EF125218 Genomic DNA. Translation: ABN58554.1.
EF125219 Genomic DNA. Translation: ABN58563.1.
EF125220 Genomic DNA. Translation: ABN58572.1.
EF125221 Genomic DNA. Translation: ABN58581.1.
EF125222 Genomic DNA. Translation: ABN58590.1.
EF125223 Genomic DNA. Translation: ABN58599.1.
EF125224 Genomic DNA. Translation: ABN58608.1.
EF125225 Genomic DNA. Translation: ABN58617.1.
EF125226 Genomic DNA. Translation: ABN58626.1.
EF125228 Genomic DNA. Translation: ABN58644.1.
Z69382 Genomic DNA. Translation: CAA93385.1.
Z71398 Genomic DNA. Translation: CAA96003.1.
AY692589 Genomic DNA. Translation: AAT92608.1.
BK006947 Genomic DNA. Translation: DAA10427.1.
PIRiS63063.
RefSeqiNP_014277.1. NM_001182960.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3J6Belectron microscopy3.20Z1-115[»]
ProteinModelPortaliP53921.
SMRiP53921.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi35705. 43 interactors.
DIPiDIP-2009N.
IntActiP53921. 1 interactor.
MINTiMINT-396727.

Proteomic databases

PRIDEiP53921.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblFungiiYNL122C; YNL122C; YNL122C.
GeneIDi855601.
KEGGisce:YNL122C.

Organism-specific databases

EuPathDBiFungiDB:YNL122C.
SGDiS000005066. YNL122C.

Phylogenomic databases

HOGENOMiHOG000248549.
InParanoidiP53921.
OrthoDBiEOG092C5Q5V.

Enzyme and pathway databases

BioCyciYEAST:G3O-33143-MONOMER.

Miscellaneous databases

PROiP53921.

Family and domain databases

InterProiIPR021137. Ribosomal_L35.
[Graphical view]
PfamiPF01632. Ribosomal_L35p. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYNM2_YEAST
AccessioniPrimary (citable) accession number: P53921
Secondary accession number(s): B0KZR4
, B0KZU1, B0KZY6, D6W161
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 1, 1996
Last sequence update: October 1, 1996
Last modified: November 2, 2016
This is version 107 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families
  4. Yeast
    Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD
  5. Yeast chromosome XIV
    Yeast (Saccharomyces cerevisiae) chromosome XIV: entries and gene names

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.