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P53921

- YNM2_YEAST

UniProt

P53921 - YNM2_YEAST

Protein

Putative mitochondrial ribosomal protein YNL122C

Gene

YNL122C

Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 91 (01 Oct 2014)
      Sequence version 1 (01 Oct 1996)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: InterPro

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Enzyme and pathway databases

    BioCyciYEAST:G3O-33143-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Putative mitochondrial ribosomal protein YNL122C
    Gene namesi
    Ordered Locus Names:YNL122C
    ORF Names:N1901
    OrganismiSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
    Taxonomic identifieri559292 [NCBI]
    Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces
    ProteomesiUP000002311: Chromosome XIV

    Organism-specific databases

    CYGDiYNL122c.
    SGDiS000005066. YNL122C.

    Subcellular locationi

    Mitochondrion 2 Publications

    GO - Cellular componenti

    1. mitochondrion Source: SGD
    2. ribosome Source: UniProtKB-KW

    Keywords - Cellular componenti

    Mitochondrion

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini? – 115Putative mitochondrial ribosomal protein YNL122CPRO_0000203430
    Transit peptidei1 – ?MitochondrionSequence Analysis

    Expressioni

    Gene expression databases

    GenevestigatoriP53921.

    Interactioni

    Protein-protein interaction databases

    BioGridi35705. 42 interactions.
    DIPiDIP-2009N.
    IntActiP53921. 1 interaction.
    MINTiMINT-396727.
    STRINGi4932.YNL122C.

    Structurei

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    1VW4electron microscopy3.20Z1-115[»]
    ProteinModelPortaliP53921.
    SMRiP53921. Positions 56-111.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein L35P family.Curated

    Keywords - Domaini

    Transit peptide

    Phylogenomic databases

    eggNOGiCOG0291.
    HOGENOMiHOG000248549.
    OMAiADSTHMH.
    OrthoDBiEOG73Z36X.

    Family and domain databases

    InterProiIPR021137. Ribosomal_L35.
    [Graphical view]
    PfamiPF01632. Ribosomal_L35p. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    P53921-1 [UniParc]FASTAAdd to Basket

    « Hide

    MKISLHNKRQ RGDQNQNMSV FNVLKPLLKG SNSFKVKLNG FLFNNVSTIT    50
    IRTLMKTHKG TAKRWRRTGN TFKRGIAGRK HGNIGWSHRS LKALTGRKIA 100
    HPAYSKHLKR LLPYH 115
    Length:115
    Mass (Da):13,244
    Last modified:October 1, 1996 - v1
    Checksum:iB6C9DC84CE1EB016
    GO

    Natural variant

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Natural varianti11 – 111R → Q in strain: V1-09 and YJM339. 1 Publication
    Natural varianti31 – 311S → P in strain: YJM269, YJM270, YJM326 and YJM1129. 1 Publication

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    EF125216 Genomic DNA. Translation: ABN58536.1.
    EF125217 Genomic DNA. Translation: ABN58545.1.
    EF125218 Genomic DNA. Translation: ABN58554.1.
    EF125219 Genomic DNA. Translation: ABN58563.1.
    EF125220 Genomic DNA. Translation: ABN58572.1.
    EF125221 Genomic DNA. Translation: ABN58581.1.
    EF125222 Genomic DNA. Translation: ABN58590.1.
    EF125223 Genomic DNA. Translation: ABN58599.1.
    EF125224 Genomic DNA. Translation: ABN58608.1.
    EF125225 Genomic DNA. Translation: ABN58617.1.
    EF125226 Genomic DNA. Translation: ABN58626.1.
    EF125228 Genomic DNA. Translation: ABN58644.1.
    Z69382 Genomic DNA. Translation: CAA93385.1.
    Z71398 Genomic DNA. Translation: CAA96003.1.
    AY692589 Genomic DNA. Translation: AAT92608.1.
    BK006947 Genomic DNA. Translation: DAA10427.1.
    PIRiS63063.
    RefSeqiNP_014277.1. NM_001182960.1.

    Genome annotation databases

    EnsemblFungiiYNL122C; YNL122C; YNL122C.
    GeneIDi855601.
    KEGGisce:YNL122C.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    EF125216 Genomic DNA. Translation: ABN58536.1 .
    EF125217 Genomic DNA. Translation: ABN58545.1 .
    EF125218 Genomic DNA. Translation: ABN58554.1 .
    EF125219 Genomic DNA. Translation: ABN58563.1 .
    EF125220 Genomic DNA. Translation: ABN58572.1 .
    EF125221 Genomic DNA. Translation: ABN58581.1 .
    EF125222 Genomic DNA. Translation: ABN58590.1 .
    EF125223 Genomic DNA. Translation: ABN58599.1 .
    EF125224 Genomic DNA. Translation: ABN58608.1 .
    EF125225 Genomic DNA. Translation: ABN58617.1 .
    EF125226 Genomic DNA. Translation: ABN58626.1 .
    EF125228 Genomic DNA. Translation: ABN58644.1 .
    Z69382 Genomic DNA. Translation: CAA93385.1 .
    Z71398 Genomic DNA. Translation: CAA96003.1 .
    AY692589 Genomic DNA. Translation: AAT92608.1 .
    BK006947 Genomic DNA. Translation: DAA10427.1 .
    PIRi S63063.
    RefSeqi NP_014277.1. NM_001182960.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    1VW4 electron microscopy 3.20 Z 1-115 [» ]
    ProteinModelPortali P53921.
    SMRi P53921. Positions 56-111.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    BioGridi 35705. 42 interactions.
    DIPi DIP-2009N.
    IntActi P53921. 1 interaction.
    MINTi MINT-396727.
    STRINGi 4932.YNL122C.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblFungii YNL122C ; YNL122C ; YNL122C .
    GeneIDi 855601.
    KEGGi sce:YNL122C.

    Organism-specific databases

    CYGDi YNL122c.
    SGDi S000005066. YNL122C.

    Phylogenomic databases

    eggNOGi COG0291.
    HOGENOMi HOG000248549.
    OMAi ADSTHMH.
    OrthoDBi EOG73Z36X.

    Enzyme and pathway databases

    BioCyci YEAST:G3O-33143-MONOMER.

    Miscellaneous databases

    NextBioi 979765.

    Gene expression databases

    Genevestigatori P53921.

    Family and domain databases

    InterProi IPR021137. Ribosomal_L35.
    [Graphical view ]
    Pfami PF01632. Ribosomal_L35p. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Sequential elimination of major-effect contributors identifies additional quantitative trait loci conditioning high-temperature growth in yeast."
      Sinha H., David L., Pascon R.C., Clauder-Muenster S., Krishnakumar S., Nguyen M., Shi G., Dean J., Davis R.W., Oefner P.J., McCusker J.H., Steinmetz L.M.
      Genetics 180:1661-1670(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA], VARIANTS GLN-11 AND PRO-31.
      Strain: ATCC 200060 / W303, S103, SK1, V1-09, YJM 1129, YJM 269, YJM 270, YJM 320, YJM 326, YJM 339, YJM 627 and YJM230.
    2. "The DNA sequence of cosmid 14-13b from chromosome XIV of Saccharomyces cerevisiae reveals an unusually high number of overlapping open reading frames."
      de Antoni A., D'Angelo M., Dal Pero F., Sartorello F., Pandolfo D., Pallavicini A., Lanfranchi G., Valle G.
      Yeast 13:261-266(1997) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    3. "The nucleotide sequence of Saccharomyces cerevisiae chromosome XIV and its evolutionary implications."
      Philippsen P., Kleine K., Poehlmann R., Duesterhoeft A., Hamberg K., Hegemann J.H., Obermaier B., Urrestarazu L.A., Aert R., Albermann K., Altmann R., Andre B., Baladron V., Ballesta J.P.G., Becam A.-M., Beinhauer J.D., Boskovic J., Buitrago M.J.
      , Bussereau F., Coster F., Crouzet M., D'Angelo M., Dal Pero F., De Antoni A., del Rey F., Doignon F., Domdey H., Dubois E., Fiedler T.A., Fleig U., Floeth M., Fritz C., Gaillardin C., Garcia-Cantalejo J.M., Glansdorff N., Goffeau A., Gueldener U., Herbert C.J., Heumann K., Heuss-Neitzel D., Hilbert H., Hinni K., Iraqui Houssaini I., Jacquet M., Jimenez A., Jonniaux J.-L., Karpfinger-Hartl L., Lanfranchi G., Lepingle A., Levesque H., Lyck R., Maftahi M., Mallet L., Maurer C.T.C., Messenguy F., Mewes H.-W., Moestl D., Nasr F., Nicaud J.-M., Niedenthal R.K., Pandolfo D., Pierard A., Piravandi E., Planta R.J., Pohl T.M., Purnelle B., Rebischung C., Remacha M.A., Revuelta J.L., Rinke M., Saiz J.E., Sartorello F., Scherens B., Sen-Gupta M., Soler-Mira A., Urbanus J.H.M., Valle G., Van Dyck L., Verhasselt P., Vierendeels F., Vissers S., Voet M., Volckaert G., Wach A., Wambutt R., Wedler H., Zollner A., Hani J.
      Nature 387:93-98(1997) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 204508 / S288c.
    4. Cited for: GENOME REANNOTATION.
      Strain: ATCC 204508 / S288c.
    5. Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
      Strain: ATCC 204508 / S288c.
    6. Cited for: SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS].
    7. "Assessing systems properties of yeast mitochondria through an interaction map of the organelle."
      Perocchi F., Jensen L.J., Gagneur J., Ahting U., von Mering C., Bork P., Prokisch H., Steinmetz L.M.
      PLoS Genet. 2:E170-E170(2006) [PubMed] [Europe PMC] [Abstract]
      Cited for: SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS].

    Entry informationi

    Entry nameiYNM2_YEAST
    AccessioniPrimary (citable) accession number: P53921
    Secondary accession number(s): B0KZR4
    , B0KZU1, B0KZY6, D6W161
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: October 1, 1996
    Last sequence update: October 1, 1996
    Last modified: October 1, 2014
    This is version 91 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programFungal Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    3D-structure, Complete proteome, Reference proteome

    Documents

    1. PDB cross-references
      Index of Protein Data Bank (PDB) cross-references
    2. Ribosomal proteins
      Ribosomal proteins families and list of entries
    3. SIMILARITY comments
      Index of protein domains and families
    4. Yeast
      Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD
    5. Yeast chromosome XIV
      Yeast (Saccharomyces cerevisiae) chromosome XIV: entries and gene names

    External Data

    Dasty 3