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Protein

Ribosome assembly protein 1

Gene

RIA1

Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Status
Reviewed-Annotation score: Annotation score: 5 out of 5-Experimental evidence at protein leveli

Functioni

GTPase involved in the biogenesis of the 60S ribosomal subunit and translational activation of ribosomes. Together with SDO1, may trigger the GTP-dependent release of TIF6 from 60S pre-ribosomes in the cytoplasm, thereby activating ribosomes for translation competence by allowing 80S ribosome assembly and facilitating TIF6 recycling to the nucleus, where it is required for 60S rRNA processing and nuclear export. Inhibits GTPase activity of ribosome-bound EF-2.3 Publications

Catalytic activityi

GTP + H2O = GDP + phosphate.

Enzyme regulationi

GTPase activity is stimulated in the presence of 60S subunits.1 Publication

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi26 – 338GTPBy similarity
Nucleotide bindingi102 – 1065GTPBy similarity
Nucleotide bindingi156 – 1594GTPBy similarity

GO - Molecular functioni

  • GTPase activity Source: SGD
  • GTP binding Source: UniProtKB-KW

GO - Biological processi

  • mature ribosome assembly Source: SGD
  • metabolic process Source: GOC
Complete GO annotation...

Keywords - Molecular functioni

Hydrolase

Keywords - Biological processi

Ribosome biogenesis

Keywords - Ligandi

GTP-binding, Nucleotide-binding

Enzyme and pathway databases

BioCyciYEAST:G3O-33179-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Ribosome assembly protein 1 (EC:3.6.5.-)
Alternative name(s):
EF-2-like GTPase
Elongation factor-like 1
Gene namesi
Name:RIA1
Synonyms:EFL1
Ordered Locus Names:YNL163C
ORF Names:N1718
OrganismiSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Taxonomic identifieri559292 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces
ProteomesiUP000002311 Componenti: Chromosome XIV

Organism-specific databases

CYGDiYNL163c.
EuPathDBiFungiDB:YNL163C.
SGDiS000005107. RIA1.

Subcellular locationi

GO - Cellular componenti

  • cytoplasm Source: SGD
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 11101110Ribosome assembly protein 1PRO_0000091559Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei431 – 4311Phosphoserine1 Publication

Keywords - PTMi

Phosphoprotein

Proteomic databases

MaxQBiP53893.
PaxDbiP53893.
PeptideAtlasiP53893.

Interactioni

Protein-protein interaction databases

BioGridi35665. 219 interactions.
DIPiDIP-2553N.
IntActiP53893. 3 interactions.
MINTiMINT-424547.

Structurei

3D structure databases

ProteinModelPortaliP53893.
SMRiP53893. Positions 10-414, 584-1056.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini17 – 262246tr-type GPROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family.PROSITE-ProRule annotation
Contains 1 tr-type G (guanine nucleotide-binding) domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiCOG0480.
GeneTreeiENSGT00550000074806.
HOGENOMiHOG000231586.
InParanoidiP53893.
KOiK14536.
OMAiFAHLYAV.
OrthoDBiEOG7PVWXS.

Family and domain databases

Gene3Di3.30.230.10. 1 hit.
3.30.70.240. 1 hit.
3.40.50.300. 1 hit.
InterProiIPR009022. EFG_III-V.
IPR000640. EFG_V.
IPR027417. P-loop_NTPase.
IPR020568. Ribosomal_S5_D2-typ_fold.
IPR014721. Ribosomal_S5_D2-typ_fold_subgr.
IPR005225. Small_GTP-bd_dom.
IPR000795. TF_GTP-bd_dom.
IPR009000. Transl_B-barrel.
IPR004161. Transl_elong_EFTu/EF1A_2.
[Graphical view]
PfamiPF00679. EFG_C. 1 hit.
PF14492. EFG_II. 1 hit.
PF03144. GTP_EFTU_D2. 1 hit.
[Graphical view]
PRINTSiPR00315. ELONGATNFCT.
SMARTiSM00838. EFG_C. 1 hit.
[Graphical view]
SUPFAMiSSF50447. SSF50447. 3 hits.
SSF52540. SSF52540. 1 hit.
SSF54211. SSF54211. 2 hits.
SSF54980. SSF54980. 2 hits.
TIGRFAMsiTIGR00231. small_GTP. 1 hit.
PROSITEiPS51722. G_TR_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P53893-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPRVESETYK RLQNDPSCIR NICIVAHVDH GKTSLSDSLL ASNGIISQRL
60 70 80 90 100
AGKIRFLDAR PDEQLRGITM ESSAISLYFR VLRKQEGSDE PLVSEHLVNL
110 120 130 140 150
IDSPGHIDFS SEVSAASRLC DGAVVLVDVV EGVCSQTVTV LRQCWTEKLK
160 170 180 190 200
PILVLNKIDR LITELQLTPQ EAYIHLSKVI EQVNSVIGSF FANERQLDDL
210 220 230 240 250
FWREQLEKNE NAEYIEKDDS GIYFNPTDNN VIFASAIDGW GFNIGQLAKF
260 270 280 290 300
YEQKLGAKRE NLQKVLWGDF YMDPKTKKII NNKGLKGRSL KPLFTSLILE
310 320 330 340 350
NIWKIYQNII TSRDSEMVEK IAKTLNIKLL ARDLRSKDDK QLLRTIMGQW
360 370 380 390 400
LPVSTAVLLT VIEKLPSPLE SQTDRLNTIL VSESDTAAMD PRLLKAMKTC
410 420 430 440 450
DKEGPVSAYV SKMLSIPREE LPVESKRIAS SDELMERSRK AREEALNAAK
460 470 480 490 500
HAGMVENMAM MDLNDNSKNT SDLYKRAKDT VMTPEVGEQT KPKPSRNNDV
510 520 530 540 550
FCVVSEPSSA LDLEFEYEGE DDSDSQDNFG LDFVPTDIDP NDPLSSMFEY
560 570 580 590 600
EEEDPLLESI KQISEDVNDE VDDIFDEKEE CLVAFARIYS GTLRVGQEIS
610 620 630 640 650
VLGPKYDPKC PEEHIETAII THLYLFMGKE LVPLDVCPSG NIVGIRGLAG
660 670 680 690 700
KVLKSGTLIE KGVQGVNLAG VNFHFTPIVR VAVEPANPVE MSKLVRGLKL
710 720 730 740 750
LDQADPCVHT YVENTGEHIL CTAGELHLER CLKDLTERFA GIEITHSEPA
760 770 780 790 800
IPYRETFLSA SDMNPPQNSQ LGRGVHELLL SQYKITFRTF PLSGKVTDFL
810 820 830 840 850
SQHQNSIKNI LKTSTSSMDP VIESTGSSFL DKKSLLVAFE EVINQEEKSR
860 870 880 890 900
ELLSGFKVKL AGFGPSRVGC NILLSQDNLL GSLFEGTPAA FEYSDSIKNG
910 920 930 940 950
FQLAVSEGPL ANEPVQGMCV LVESVHKMSQ DEIESIEDPR YQQHIVDLSG
960 970 980 990 1000
RLITSTRDAI HEAFLDWSPR IMWAIYSCDI QTSVDVLGKV YAVILQRHGK
1010 1020 1030 1040 1050
IISEEMKEGT PFFQIEAHVP VVEAFGLSED IRKRTSGAAQ PQLVFSGFEC
1060 1070 1080 1090 1100
IDLDPFWVPT TEEELEELGD TADRENIARK HMNAIRRRKG LFIEEKVVEN
1110
AEKQRTLKKN
Length:1,110
Mass (Da):124,464
Last modified:October 1, 1996 - v1
Checksum:i6FFD6ACD53F4510C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X92517 Genomic DNA. Translation: CAA63276.1.
Z71439 Genomic DNA. Translation: CAA96050.1.
BK006947 Genomic DNA. Translation: DAA10385.1.
PIRiS60964.
RefSeqiNP_014236.1. NM_001183001.1.

Genome annotation databases

EnsemblFungiiYNL163C; YNL163C; YNL163C.
GeneIDi855558.
KEGGisce:YNL163C.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X92517 Genomic DNA. Translation: CAA63276.1.
Z71439 Genomic DNA. Translation: CAA96050.1.
BK006947 Genomic DNA. Translation: DAA10385.1.
PIRiS60964.
RefSeqiNP_014236.1. NM_001183001.1.

3D structure databases

ProteinModelPortaliP53893.
SMRiP53893. Positions 10-414, 584-1056.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi35665. 219 interactions.
DIPiDIP-2553N.
IntActiP53893. 3 interactions.
MINTiMINT-424547.

Proteomic databases

MaxQBiP53893.
PaxDbiP53893.
PeptideAtlasiP53893.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblFungiiYNL163C; YNL163C; YNL163C.
GeneIDi855558.
KEGGisce:YNL163C.

Organism-specific databases

CYGDiYNL163c.
EuPathDBiFungiDB:YNL163C.
SGDiS000005107. RIA1.

Phylogenomic databases

eggNOGiCOG0480.
GeneTreeiENSGT00550000074806.
HOGENOMiHOG000231586.
InParanoidiP53893.
KOiK14536.
OMAiFAHLYAV.
OrthoDBiEOG7PVWXS.

Enzyme and pathway databases

BioCyciYEAST:G3O-33179-MONOMER.

Miscellaneous databases

NextBioi979646.
PROiP53893.

Family and domain databases

Gene3Di3.30.230.10. 1 hit.
3.30.70.240. 1 hit.
3.40.50.300. 1 hit.
InterProiIPR009022. EFG_III-V.
IPR000640. EFG_V.
IPR027417. P-loop_NTPase.
IPR020568. Ribosomal_S5_D2-typ_fold.
IPR014721. Ribosomal_S5_D2-typ_fold_subgr.
IPR005225. Small_GTP-bd_dom.
IPR000795. TF_GTP-bd_dom.
IPR009000. Transl_B-barrel.
IPR004161. Transl_elong_EFTu/EF1A_2.
[Graphical view]
PfamiPF00679. EFG_C. 1 hit.
PF14492. EFG_II. 1 hit.
PF03144. GTP_EFTU_D2. 1 hit.
[Graphical view]
PRINTSiPR00315. ELONGATNFCT.
SMARTiSM00838. EFG_C. 1 hit.
[Graphical view]
SUPFAMiSSF50447. SSF50447. 3 hits.
SSF52540. SSF52540. 1 hit.
SSF54211. SSF54211. 2 hits.
SSF54980. SSF54980. 2 hits.
TIGRFAMsiTIGR00231. small_GTP. 1 hit.
PROSITEiPS51722. G_TR_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "The sequence of 36.8 kb from the left arm of chromosome XIV reveals 24 complete open reading frames: 18 correspond to new genes, one of which encodes a protein similar to the human myotonic dystrophy kinase."
    Nasr F., Becam A.-M., Herbert C.J.
    Yeast 12:169-175(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: ATCC 96604 / S288c / FY1679.
  2. "The nucleotide sequence of Saccharomyces cerevisiae chromosome XIV and its evolutionary implications."
    Philippsen P., Kleine K., Poehlmann R., Duesterhoeft A., Hamberg K., Hegemann J.H., Obermaier B., Urrestarazu L.A., Aert R., Albermann K., Altmann R., Andre B., Baladron V., Ballesta J.P.G., Becam A.-M., Beinhauer J.D., Boskovic J., Buitrago M.J.
    , Bussereau F., Coster F., Crouzet M., D'Angelo M., Dal Pero F., De Antoni A., del Rey F., Doignon F., Domdey H., Dubois E., Fiedler T.A., Fleig U., Floeth M., Fritz C., Gaillardin C., Garcia-Cantalejo J.M., Glansdorff N., Goffeau A., Gueldener U., Herbert C.J., Heumann K., Heuss-Neitzel D., Hilbert H., Hinni K., Iraqui Houssaini I., Jacquet M., Jimenez A., Jonniaux J.-L., Karpfinger-Hartl L., Lanfranchi G., Lepingle A., Levesque H., Lyck R., Maftahi M., Mallet L., Maurer C.T.C., Messenguy F., Mewes H.-W., Moestl D., Nasr F., Nicaud J.-M., Niedenthal R.K., Pandolfo D., Pierard A., Piravandi E., Planta R.J., Pohl T.M., Purnelle B., Rebischung C., Remacha M.A., Revuelta J.L., Rinke M., Saiz J.E., Sartorello F., Scherens B., Sen-Gupta M., Soler-Mira A., Urbanus J.H.M., Valle G., Van Dyck L., Verhasselt P., Vierendeels F., Vissers S., Voet M., Volckaert G., Wach A., Wambutt R., Wedler H., Zollner A., Hani J.
    Nature 387:93-98(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 204508 / S288c.
  3. Cited for: GENOME REANNOTATION.
    Strain: ATCC 204508 / S288c.
  4. "The nucle(ol)ar Tif6p and Efl1p are required for a late cytoplasmic step of ribosome synthesis."
    Senger B., Lafontaine D.L.J., Graindorge J.-S., Gadal O., Camasses A., Sanni A., Garnier J.-M., Breitenbach M., Hurt E., Fasiolo F.
    Mol. Cell 8:1363-1373(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: FUNCTION, SUBCELLULAR LOCATION, ENZYME REGULATION.
  5. "Ria1p (Ynl163c), a protein similar to elongation factors 2, is involved in the biogenesis of the 60S subunit of the ribosome in Saccharomyces cerevisiae."
    Becam A.-M., Nasr F., Racki W.J., Zagulski M., Herbert C.J.
    Mol. Genet. Genomics 266:454-462(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: FUNCTION, SUBCELLULAR LOCATION.
  6. Cited for: SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS].
  7. Cited for: LEVEL OF PROTEIN EXPRESSION [LARGE SCALE ANALYSIS].
  8. "Deletion of EFL1 results in heterogeneity of the 60 S GTPase-associated rRNA conformation."
    Graindorge J.-S., Rousselle J.-C., Senger B., Lenormand P., Namane A., Lacroute F., Fasiolo F.
    J. Mol. Biol. 352:355-369(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: FUNCTION.
  9. "A multidimensional chromatography technology for in-depth phosphoproteome analysis."
    Albuquerque C.P., Smolka M.B., Payne S.H., Bafna V., Eng J., Zhou H.
    Mol. Cell. Proteomics 7:1389-1396(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
  10. "Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution."
    Holt L.J., Tuch B.B., Villen J., Johnson A.D., Gygi S.P., Morgan D.O.
    Science 325:1682-1686(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-431, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].

Entry informationi

Entry nameiRIA1_YEAST
AccessioniPrimary (citable) accession number: P53893
Secondary accession number(s): D6W119
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 1, 1996
Last sequence update: October 1, 1996
Last modified: July 22, 2015
This is version 127 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Miscellaneous

Present with 7770 molecules/cell in log phase SD medium.1 Publication

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Yeast
    Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD
  3. Yeast chromosome XIV
    Yeast (Saccharomyces cerevisiae) chromosome XIV: entries and gene names

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.