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P53667

- LIMK1_HUMAN

UniProt

P53667 - LIMK1_HUMAN

Protein

LIM domain kinase 1

Gene

LIMK1

Organism
Homo sapiens (Human)
Status
Reviewed - Annotation score: 5 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 160 (01 Oct 2014)
      Sequence version 3 (07 Mar 2006)
      Previous versions | rss
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    Functioni

    Serine/threonine-protein kinase that plays an essential role in the regulation of actin filament dynamics. Acts downstream of several Rho family GTPase signal transduction pathways. Activated by upstream kinases including ROCK1, PAK1 and PAK4, which phosphorylate LIMK1 on a threonine residue located in its activation loop. LIMK1 subsequently phosphorylates and inactivates the actin binding/depolymerizing factors cofilin-1/CFL1, cofilin-2/CFL2 and destrin/DSTN, thereby preventing the cleavage of filamentous actin (F-actin), and stabilizing the actin cytoskeleton. In this way LIMK1 regulates several actin-dependent biological processes including cell motility, cell cycle progression, and differentiation. Phosphorylates TPPP on serine residues, thereby promoting microtubule disassembly. Stimulates axonal outgrowth and may be involved in brain development. Isoform 3 has a dominant negative effect on actin cytoskeletal changes. Required for atypical chemokine receptor ACKR2-induced phosphorylation of cofilin (CFL1).8 Publications

    Catalytic activityi

    ATP + a protein = ADP + a phosphoprotein.

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Binding sitei368 – 3681ATPPROSITE-ProRule annotation
    Active sitei460 – 4601By similarity

    Regions

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Nucleotide bindingi345 – 3539ATPPROSITE-ProRule annotation

    GO - Molecular functioni

    1. ATP binding Source: UniProtKB-KW
    2. heat shock protein binding Source: BHF-UCL
    3. protein binding Source: UniProtKB
    4. protein kinase activity Source: ProtInc
    5. protein serine/threonine kinase activity Source: Reactome
    6. zinc ion binding Source: InterPro

    GO - Biological processi

    1. actin cytoskeleton organization Source: ProtInc
    2. axon guidance Source: Reactome
    3. Fc-gamma receptor signaling pathway involved in phagocytosis Source: Reactome
    4. innate immune response Source: Reactome
    5. negative regulation of ubiquitin-protein transferase activity Source: BHF-UCL
    6. nervous system development Source: ProtInc
    7. positive regulation of actin filament bundle assembly Source: BHF-UCL
    8. positive regulation of axon extension Source: UniProtKB
    9. protein phosphorylation Source: UniProtKB
    10. Rho protein signal transduction Source: ProtInc
    11. signal transduction Source: ProtInc

    Keywords - Molecular functioni

    Kinase, Serine/threonine-protein kinase, Transferase

    Keywords - Ligandi

    ATP-binding, Metal-binding, Nucleotide-binding, Zinc

    Enzyme and pathway databases

    BRENDAi2.7.11.1. 2681.
    ReactomeiREACT_160086. Regulation of actin dynamics for phagocytic cup formation.
    REACT_19236. Sema3A PAK dependent Axon repulsion.
    REACT_19277. Sema4D induced cell migration and growth-cone collapse.
    SignaLinkiP53667.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    LIM domain kinase 1 (EC:2.7.11.1)
    Short name:
    LIMK-1
    Gene namesi
    Name:LIMK1
    Synonyms:LIMK
    OrganismiHomo sapiens (Human)
    Taxonomic identifieri9606 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
    ProteomesiUP000005640: Chromosome 7

    Organism-specific databases

    HGNCiHGNC:6613. LIMK1.

    Subcellular locationi

    Cytoplasm. Nucleus
    Note: Predominantly found in the cytoplasm.

    GO - Cellular componenti

    1. cytoplasm Source: BHF-UCL
    2. cytosol Source: Reactome
    3. focal adhesion Source: Ensembl
    4. neuron projection Source: UniProtKB
    5. nucleus Source: HPA

    Keywords - Cellular componenti

    Cytoplasm, Nucleus

    Pathology & Biotechi

    Involvement in diseasei

    LIMK1 is located in the Williams-Beuren syndrome (WBS) critical region. WBS results from a hemizygous deletion of several genes on chromosome 7q11.23, thought to arise as a consequence of unequal crossing over between highly homologous low-copy repeat sequences flanking the deleted region.

    Mutagenesis

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Mutagenesisi84 – 841C → S: Enhances actin aggregation. 1 Publication
    Mutagenesisi177 – 1782GL → EA: Enhances actin aggregation.
    Mutagenesisi460 – 4601D → N: Abrogates kinase activity. 1 Publication
    Mutagenesisi496 – 50611Missing: Reduces actin aggregation. Add
    BLAST
    Mutagenesisi503 – 5053RKK → GAA: Abolishes kinase activity.
    Mutagenesisi508 – 5081T → A: Abolishes activation by ROCK1. 2 Publications
    Mutagenesisi508 – 5081T → EE: Enhances kinase activity. 2 Publications
    Mutagenesisi508 – 5081T → V or E: Reduces kinase activity. 2 Publications

    Keywords - Diseasei

    Williams-Beuren syndrome

    Organism-specific databases

    Orphaneti904. Williams syndrome.
    PharmGKBiPA30386.

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 647647LIM domain kinase 1PRO_0000075803Add
    BLAST

    Amino acid modifications

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Modified residuei210 – 2101Phosphoserine2 Publications
    Modified residuei229 – 2291Phosphothreonine2 Publications
    Modified residuei302 – 3021Phosphoserine1 Publication
    Modified residuei307 – 3071Phosphoserine1 Publication
    Modified residuei310 – 3101Phosphoserine3 Publications
    Modified residuei323 – 3231Phosphoserine; by MAPKAPK21 Publication
    Modified residuei337 – 3371Phosphoserine1 Publication
    Modified residuei508 – 5081Phosphothreonine; by ROCK1 and PAK14 Publications

    Post-translational modificationi

    Autophosphorylated By similarity. Phosphorylated on Thr-508 by ROCK1 and PAK1, resulting in activation. Phosphorylated by PAK4 which increases the ability of LIMK1 to phosphorylate cofilin. Phosphorylated at Ser-323 by MAPKAPK2 during activation of VEGFA-induced signaling, which results in activation of LIMK1 and promotion of actin reorganization, cell migration, and tubule formation of endothelial cells. Dephosphorylated and inactivated by SSH1. Phosphorylated by CDC42BP.By similarity10 Publications
    Ubiquitinated. 'Lys-48'-linked polyubiquitination by RNF6 leads to proteasomal degradation through the 26S proteasome, modulating LIMK1 levels in the growth cone and its effect on axonal outgrowth. Also polyubiquitinated by RLIM By similarity.By similarity

    Keywords - PTMi

    Phosphoprotein, Ubl conjugation

    Proteomic databases

    MaxQBiP53667.
    PaxDbiP53667.
    PRIDEiP53667.

    PTM databases

    PhosphoSiteiP53667.

    Expressioni

    Tissue specificityi

    Highest expression in both adult and fetal nervous system. Detected ubiquitously throughout the different regions of adult brain, with highest levels in the cerebral cortex. Expressed to a lesser extent in heart and skeletal muscle.

    Gene expression databases

    ArrayExpressiP53667.
    BgeeiP53667.
    CleanExiHS_LIMK1.
    GenevestigatoriP53667.

    Organism-specific databases

    HPAiHPA028064.
    HPA028516.

    Interactioni

    Subunit structurei

    Interacts (via LIM domain) with the cytoplasmic domain of NRG1 By similarity. Interacts with NISCH By similarity. Interacts with RLIM and RNF6 By similarity. Self-associates to form homodimers. Interacts with HSP90AA1; this interaction promotes LIMK1 dimerization and subsequent transphosphorylation. Interacts with CDN1C. Interacts with SSH1. Interacts with ROCK1.By similarity5 Publications

    Binary interactionsi

    WithEntry#Exp.IntActNotes
    Arrb1P290662EBI-444403,EBI-4303019From a different organism.
    Arrb2P290672EBI-444403,EBI-1636616From a different organism.
    LATS1O958355EBI-444403,EBI-444209
    MMP14P502814EBI-444403,EBI-992788
    PAK1Q131535EBI-444403,EBI-1307
    PAK2Q131772EBI-444403,EBI-1045887
    SSH1Q8WYL57EBI-444403,EBI-1222387

    Protein-protein interaction databases

    BioGridi110172. 24 interactions.
    DIPiDIP-31605N.
    IntActiP53667. 16 interactions.
    MINTiMINT-2833166.
    STRINGi9606.ENSP00000336740.

    Structurei

    Secondary structure

    1
    647
    Legend: HelixTurnBeta strand
    Show more details
    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Beta strandi332 – 3343
    Helixi336 – 3383
    Beta strandi339 – 3468
    Beta strandi349 – 35810
    Turni359 – 3613
    Beta strandi364 – 3718
    Helixi375 – 38814
    Beta strandi399 – 4057
    Beta strandi408 – 4147
    Helixi421 – 4277
    Helixi434 – 45320
    Beta strandi465 – 4684
    Beta strandi474 – 4763
    Helixi513 – 5153
    Helixi518 – 5214
    Helixi529 – 54416
    Turni550 – 5523
    Beta strandi559 – 5613
    Helixi563 – 5697
    Helixi579 – 5868
    Helixi591 – 5933
    Helixi597 – 61317
    Helixi618 – 63417

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    3S95X-ray1.65A/B330-637[»]
    ProteinModelPortaliP53667.
    SMRiP53667. Positions 22-145, 158-258, 330-637.
    ModBaseiSearch...
    MobiDBiSearch...

    Miscellaneous databases

    EvolutionaryTraceiP53667.

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Domaini25 – 7551LIM zinc-binding 1PROSITE-ProRule annotationAdd
    BLAST
    Domaini84 – 13754LIM zinc-binding 2PROSITE-ProRule annotationAdd
    BLAST
    Domaini165 – 25894PDZPROSITE-ProRule annotationAdd
    BLAST
    Domaini339 – 604266Protein kinasePROSITE-ProRule annotationAdd
    BLAST

    Sequence similaritiesi

    Contains 2 LIM zinc-binding domains.PROSITE-ProRule annotation
    Contains 1 PDZ (DHR) domain.PROSITE-ProRule annotation
    Contains 1 protein kinase domain.PROSITE-ProRule annotation

    Keywords - Domaini

    LIM domain, Repeat

    Phylogenomic databases

    eggNOGiCOG0515.
    HOGENOMiHOG000013121.
    HOVERGENiHBG052328.
    InParanoidiP53667.
    KOiK05743.
    PhylomeDBiP53667.
    TreeFamiTF318014.

    Family and domain databases

    Gene3Di2.10.110.10. 2 hits.
    2.30.42.10. 1 hit.
    InterProiIPR011009. Kinase-like_dom.
    IPR001478. PDZ.
    IPR000719. Prot_kinase_dom.
    IPR017441. Protein_kinase_ATP_BS.
    IPR001245. Ser-Thr/Tyr_kinase_cat_dom.
    IPR001781. Znf_LIM.
    [Graphical view]
    PfamiPF00412. LIM. 2 hits.
    PF00595. PDZ. 1 hit.
    PF07714. Pkinase_Tyr. 1 hit.
    [Graphical view]
    PRINTSiPR00109. TYRKINASE.
    SMARTiSM00132. LIM. 2 hits.
    SM00228. PDZ. 1 hit.
    [Graphical view]
    SUPFAMiSSF50156. SSF50156. 1 hit.
    SSF56112. SSF56112. 1 hit.
    PROSITEiPS00478. LIM_DOMAIN_1. 2 hits.
    PS50023. LIM_DOMAIN_2. 2 hits.
    PS50106. PDZ. 1 hit.
    PS00107. PROTEIN_KINASE_ATP. 1 hit.
    PS50011. PROTEIN_KINASE_DOM. 1 hit.
    [Graphical view]

    Sequences (4)i

    Sequence statusi: Complete.

    This entry describes 4 isoformsi produced by alternative splicing. Align

    Isoform 1 (identifier: P53667-1) [UniParc]FASTAAdd to Basket

    This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

    « Hide

    MRLTLLCCTW REERMGEEGS ELPVCASCGQ RIYDGQYLQA LNADWHADCF    50
    RCCDCSASLS HQYYEKDGQL FCKKDYWARY GESCHGCSEQ ITKGLVMVAG 100
    ELKYHPECFI CLTCGTFIGD GDTYTLVEHS KLYCGHCYYQ TVVTPVIEQI 150
    LPDSPGSHLP HTVTLVSIPA SSHGKRGLSV SIDPPHGPPG CGTEHSHTVR 200
    VQGVDPGCMS PDVKNSIHVG DRILEINGTP IRNVPLDEID LLIQETSRLL 250
    QLTLEHDPHD TLGHGLGPET SPLSSPAYTP SGEAGSSARQ KPVLRSCSID 300
    RSPGAGSLGS PASQRKDLGR SESLRVVCRP HRIFRPSDLI HGEVLGKGCF 350
    GQAIKVTHRE TGEVMVMKEL IRFDEETQRT FLKEVKVMRC LEHPNVLKFI 400
    GVLYKDKRLN FITEYIKGGT LRGIIKSMDS QYPWSQRVSF AKDIASGMAY 450
    LHSMNIIHRD LNSHNCLVRE NKNVVVADFG LARLMVDEKT QPEGLRSLKK 500
    PDRKKRYTVV GNPYWMAPEM INGRSYDEKV DVFSFGIVLC EIIGRVNADP 550
    DYLPRTMDFG LNVRGFLDRY CPPNCPPSFF PITVRCCDLD PEKRPSFVKL 600
    EHWLETLRMH LAGHLPLGPQ LEQLDRGFWE TYRRGESGLP AHPEVPD 647
    Length:647
    Mass (Da):72,585
    Last modified:March 7, 2006 - v3
    Checksum:i9838BEFBE7006447
    GO
    Isoform 2 (identifier: P53667-2) [UniParc]FASTAAdd to Basket

    The sequence of this isoform differs from the canonical sequence as follows:
         1-14: Missing.

    Show »
    Length:633
    Mass (Da):70,793
    Checksum:iEAF0A3B93916D9FA
    GO
    Isoform 3 (identifier: P53667-3) [UniParc]FASTAAdd to Basket

    The sequence of this isoform differs from the canonical sequence as follows:
         294-305: LRSCSIDRSPGA → FARTWVALSPSA
         306-647: Missing.

    Note: May be produced at very low levels due to a premature stop codon in the mRNA, leading to nonsense-mediated mRNA decay.

    Show »
    Length:305
    Mass (Da):33,373
    Checksum:i65FEF49849CCA142
    GO
    Isoform 4 (identifier: P53667-4) [UniParc]FASTAAdd to Basket

    The sequence of this isoform differs from the canonical sequence as follows:
         1-51: MRLTLLCCTWREERMGEEGSELPVCASCGQRIYDGQYLQALNADWHADCFR → MLLASAPRRRRFLQRAK

    Note: No experimental confirmation available.

    Show »
    Length:613
    Mass (Da):68,729
    Checksum:iA78F41C1313E9CEE
    GO

    Natural variant

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Natural varianti190 – 1901G → A.1 Publication
    Corresponds to variant rs35827364 [ dbSNP | Ensembl ].
    VAR_042246
    Natural varianti247 – 2471S → N.1 Publication
    Corresponds to variant rs55661242 [ dbSNP | Ensembl ].
    VAR_042247
    Natural varianti422 – 4221R → Q.1 Publication
    Corresponds to variant rs55679316 [ dbSNP | Ensembl ].
    VAR_042248
    Natural varianti580 – 5801F → Y.2 Publications
    Corresponds to variant rs178412 [ dbSNP | Ensembl ].
    VAR_050148

    Alternative sequence

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Alternative sequencei1 – 5151MRLTL…ADCFR → MLLASAPRRRRFLQRAK in isoform 4. 1 PublicationVSP_043331Add
    BLAST
    Alternative sequencei1 – 1414Missing in isoform 2. CuratedVSP_003125Add
    BLAST
    Alternative sequencei294 – 30512LRSCS…RSPGA → FARTWVALSPSA in isoform 3. 1 PublicationVSP_003126Add
    BLAST
    Alternative sequencei306 – 647342Missing in isoform 3. 1 PublicationVSP_003127Add
    BLAST

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    D26309 mRNA. Translation: BAA05371.1.
    U62293 Genomic DNA. Translation: AAB17545.1.
    U62293 Genomic DNA. Translation: AAB17546.1.
    U63721 Genomic DNA. Translation: AAC13885.1.
    U63721 Genomic DNA. Translation: AAC13886.1.
    AF134379 mRNA. Translation: AAD25742.1.
    AK300382 mRNA. Translation: BAH13274.1.
    AC005056 Genomic DNA. No translation available.
    AC005057 Genomic DNA. Translation: AAS07438.1.
    CH471200 Genomic DNA. Translation: EAW69620.1.
    CH471200 Genomic DNA. Translation: EAW69621.1.
    CH471200 Genomic DNA. Translation: EAW69622.1.
    CH471200 Genomic DNA. Translation: EAW69623.1.
    CCDSiCCDS5563.1. [P53667-1]
    CCDS56491.1. [P53667-4]
    PIRiJP0078.
    RefSeqiNP_001191355.1. NM_001204426.1. [P53667-4]
    NP_002305.1. NM_002314.3. [P53667-1]
    UniGeneiHs.647035.

    Genome annotation databases

    EnsembliENST00000336180; ENSP00000336740; ENSG00000106683. [P53667-1]
    ENST00000435201; ENSP00000414606; ENSG00000106683. [P53667-3]
    ENST00000538333; ENSP00000444452; ENSG00000106683. [P53667-4]
    GeneIDi3984.
    KEGGihsa:3984.
    UCSCiuc003uaa.2. human. [P53667-1]
    uc003uab.3. human. [P53667-4]

    Polymorphism databases

    DMDMi90185240.

    Keywords - Coding sequence diversityi

    Alternative splicing, Polymorphism

    Cross-referencesi

    Web resourcesi

    Atlas of Genetics and Cytogenetics in Oncology and Haematology

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    D26309 mRNA. Translation: BAA05371.1 .
    U62293 Genomic DNA. Translation: AAB17545.1 .
    U62293 Genomic DNA. Translation: AAB17546.1 .
    U63721 Genomic DNA. Translation: AAC13885.1 .
    U63721 Genomic DNA. Translation: AAC13886.1 .
    AF134379 mRNA. Translation: AAD25742.1 .
    AK300382 mRNA. Translation: BAH13274.1 .
    AC005056 Genomic DNA. No translation available.
    AC005057 Genomic DNA. Translation: AAS07438.1 .
    CH471200 Genomic DNA. Translation: EAW69620.1 .
    CH471200 Genomic DNA. Translation: EAW69621.1 .
    CH471200 Genomic DNA. Translation: EAW69622.1 .
    CH471200 Genomic DNA. Translation: EAW69623.1 .
    CCDSi CCDS5563.1. [P53667-1 ]
    CCDS56491.1. [P53667-4 ]
    PIRi JP0078.
    RefSeqi NP_001191355.1. NM_001204426.1. [P53667-4 ]
    NP_002305.1. NM_002314.3. [P53667-1 ]
    UniGenei Hs.647035.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    3S95 X-ray 1.65 A/B 330-637 [» ]
    ProteinModelPortali P53667.
    SMRi P53667. Positions 22-145, 158-258, 330-637.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    BioGridi 110172. 24 interactions.
    DIPi DIP-31605N.
    IntActi P53667. 16 interactions.
    MINTi MINT-2833166.
    STRINGi 9606.ENSP00000336740.

    Chemistry

    BindingDBi P53667.
    ChEMBLi CHEMBL3836.
    GuidetoPHARMACOLOGYi 2054.

    PTM databases

    PhosphoSitei P53667.

    Polymorphism databases

    DMDMi 90185240.

    Proteomic databases

    MaxQBi P53667.
    PaxDbi P53667.
    PRIDEi P53667.

    Protocols and materials databases

    DNASUi 3984.
    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENST00000336180 ; ENSP00000336740 ; ENSG00000106683 . [P53667-1 ]
    ENST00000435201 ; ENSP00000414606 ; ENSG00000106683 . [P53667-3 ]
    ENST00000538333 ; ENSP00000444452 ; ENSG00000106683 . [P53667-4 ]
    GeneIDi 3984.
    KEGGi hsa:3984.
    UCSCi uc003uaa.2. human. [P53667-1 ]
    uc003uab.3. human. [P53667-4 ]

    Organism-specific databases

    CTDi 3984.
    GeneCardsi GC07P073497.
    HGNCi HGNC:6613. LIMK1.
    HPAi HPA028064.
    HPA028516.
    MIMi 601329. gene.
    neXtProti NX_P53667.
    Orphaneti 904. Williams syndrome.
    PharmGKBi PA30386.
    GenAtlasi Search...

    Phylogenomic databases

    eggNOGi COG0515.
    HOGENOMi HOG000013121.
    HOVERGENi HBG052328.
    InParanoidi P53667.
    KOi K05743.
    PhylomeDBi P53667.
    TreeFami TF318014.

    Enzyme and pathway databases

    BRENDAi 2.7.11.1. 2681.
    Reactomei REACT_160086. Regulation of actin dynamics for phagocytic cup formation.
    REACT_19236. Sema3A PAK dependent Axon repulsion.
    REACT_19277. Sema4D induced cell migration and growth-cone collapse.
    SignaLinki P53667.

    Miscellaneous databases

    EvolutionaryTracei P53667.
    GeneWikii LIMK1.
    GenomeRNAii 3984.
    NextBioi 15626.
    PROi P53667.
    SOURCEi Search...

    Gene expression databases

    ArrayExpressi P53667.
    Bgeei P53667.
    CleanExi HS_LIMK1.
    Genevestigatori P53667.

    Family and domain databases

    Gene3Di 2.10.110.10. 2 hits.
    2.30.42.10. 1 hit.
    InterProi IPR011009. Kinase-like_dom.
    IPR001478. PDZ.
    IPR000719. Prot_kinase_dom.
    IPR017441. Protein_kinase_ATP_BS.
    IPR001245. Ser-Thr/Tyr_kinase_cat_dom.
    IPR001781. Znf_LIM.
    [Graphical view ]
    Pfami PF00412. LIM. 2 hits.
    PF00595. PDZ. 1 hit.
    PF07714. Pkinase_Tyr. 1 hit.
    [Graphical view ]
    PRINTSi PR00109. TYRKINASE.
    SMARTi SM00132. LIM. 2 hits.
    SM00228. PDZ. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50156. SSF50156. 1 hit.
    SSF56112. SSF56112. 1 hit.
    PROSITEi PS00478. LIM_DOMAIN_1. 2 hits.
    PS50023. LIM_DOMAIN_2. 2 hits.
    PS50106. PDZ. 1 hit.
    PS00107. PROTEIN_KINASE_ATP. 1 hit.
    PS50011. PROTEIN_KINASE_DOM. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Identification of a human cDNA encoding a novel protein kinase with two repeats of the LIM/double zinc finger motif."
      Mizuno K., Okano I., Ohashi K., Nunoue K., Kuma K., Miyata T., Nakamura T.
      Oncogene 9:1605-1612(1994) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1).
    2. Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] (ISOFORMS 1 AND 2), VARIANT TYR-580.
      Tissue: Hippocampus and Placenta.
    3. "Identification of genes from a 500-kb region at 7q11.23 that is commonly deleted in Williams syndrome patients."
      Osborne L.R., Martindale D.W., Scherer S.W., Shi X.-M., Huizenga J., Heng H.H.Q., Costa T., Pober B., Lew L., Brinkman J., Rommens J., Koop B.F., Tsui L.-C.
      Genomics 36:328-336(1996) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA], VARIANT TYR-580, GENE DELETION IN WILLIAMS-BEUREN SYNDROME.
    4. "Structural features of LIM kinase that control effects on the actin cytoskeleton."
      Edwards D.C., Gill G.N.
      J. Biol. Chem. 274:11352-11361(1999) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 3), FUNCTION, SELF-ASSOCIATION, SUBCELLULAR LOCATION, MUTAGENESIS OF CYS-84; 177-GLY-LEU-178; ASP-460; 496-ARG--ARG-506; 503-ARG--GLY-505 AND THR-508.
      Tissue: Epidermal carcinoma.
    5. "Complete sequencing and characterization of 21,243 full-length human cDNAs."
      Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S.
      , Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.
      Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 4).
      Tissue: Placenta.
    6. "The DNA sequence of human chromosome 7."
      Hillier L.W., Fulton R.S., Fulton L.A., Graves T.A., Pepin K.H., Wagner-McPherson C., Layman D., Maas J., Jaeger S., Walker R., Wylie K., Sekhon M., Becker M.C., O'Laughlin M.D., Schaller M.E., Fewell G.A., Delehaunty K.D., Miner T.L.
      , Nash W.E., Cordes M., Du H., Sun H., Edwards J., Bradshaw-Cordum H., Ali J., Andrews S., Isak A., Vanbrunt A., Nguyen C., Du F., Lamar B., Courtney L., Kalicki J., Ozersky P., Bielicki L., Scott K., Holmes A., Harkins R., Harris A., Strong C.M., Hou S., Tomlinson C., Dauphin-Kohlberg S., Kozlowicz-Reilly A., Leonard S., Rohlfing T., Rock S.M., Tin-Wollam A.-M., Abbott A., Minx P., Maupin R., Strowmatt C., Latreille P., Miller N., Johnson D., Murray J., Woessner J.P., Wendl M.C., Yang S.-P., Schultz B.R., Wallis J.W., Spieth J., Bieri T.A., Nelson J.O., Berkowicz N., Wohldmann P.E., Cook L.L., Hickenbotham M.T., Eldred J., Williams D., Bedell J.A., Mardis E.R., Clifton S.W., Chissoe S.L., Marra M.A., Raymond C., Haugen E., Gillett W., Zhou Y., James R., Phelps K., Iadanoto S., Bubb K., Simms E., Levy R., Clendenning J., Kaul R., Kent W.J., Furey T.S., Baertsch R.A., Brent M.R., Keibler E., Flicek P., Bork P., Suyama M., Bailey J.A., Portnoy M.E., Torrents D., Chinwalla A.T., Gish W.R., Eddy S.R., McPherson J.D., Olson M.V., Eichler E.E., Green E.D., Waterston R.H., Wilson R.K.
      Nature 424:157-164(2003) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    7. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    8. "Activation of LIM-kinase by Pak1 couples Rac/Cdc42 GTPase signalling to actin cytoskeletal dynamics."
      Edwards D.C., Sanders L.C., Bokoch G.M., Gill G.N.
      Nat. Cell Biol. 1:253-259(1999) [PubMed] [Europe PMC] [Abstract]
      Cited for: PHOSPHORYLATION AT THR-508 BY PAK1.
    9. "Signaling from Rho to the actin cytoskeleton through protein kinases ROCK and LIM-kinase."
      Maekawa M., Ishizaki T., Boku S., Watanabe N., Fujita A., Iwamatsu A., Obinata T., Ohashi K., Mizuno K., Narumiya S.
      Science 285:895-898(1999) [PubMed] [Europe PMC] [Abstract]
      Cited for: FUNCTION, INTERACTION WITH ROCK1.
    10. "Rho-associated kinase ROCK activates LIM-kinase 1 by phosphorylation at threonine 508 within the activation loop."
      Ohashi K., Nagata K., Maekawa M., Ishizaki T., Narumiya S., Mizuno K.
      J. Biol. Chem. 275:3577-3582(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: PHOSPHORYLATION AT THR-508, MUTAGENESIS OF THR-508, INTERACTION WITH ROCK1.
    11. "Activation of LIM kinases by myotonic dystrophy kinase-related Cdc42-binding kinase alpha."
      Sumi T., Matsumoto K., Shibuya A., Nakamura T.
      J. Biol. Chem. 276:23092-23096(2001) [PubMed] [Europe PMC] [Abstract]
      Cited for: PHOSPHORYLATION BY CDC42BP.
    12. "Cytoskeletal changes regulated by the PAK4 serine/threonine kinase are mediated by LIM kinase 1 and cofilin."
      Dan C., Kelly A., Bernard O., Minden A.
      J. Biol. Chem. 276:32115-32121(2001) [PubMed] [Europe PMC] [Abstract]
      Cited for: PHOSPHORYLATION BY PAK4.
    13. "Control of actin reorganization by Slingshot, a family of phosphatases that dephosphorylate ADF/cofilin."
      Niwa R., Nagata-Ohashi K., Takeichi M., Mizuno K., Uemura T.
      Cell 108:233-246(2002) [PubMed] [Europe PMC] [Abstract]
      Cited for: FUNCTION.
    14. "Cell cycle-associated changes in Slingshot phosphatase activity and roles in cytokinesis in animal cells."
      Kaji N., Ohashi K., Shuin M., Niwa R., Uemura T., Mizuno K.
      J. Biol. Chem. 278:33450-33455(2003) [PubMed] [Europe PMC] [Abstract]
      Cited for: FUNCTION.
    15. "p57Kip2 regulates actin dynamics by binding and translocating LIM-kinase 1 to the nucleus."
      Yokoo T., Toyoshima H., Miura M., Wang Y., Iida K.T., Suzuki H., Sone H., Shimano H., Gotoda T., Nishimori S., Tanaka K., Yamada N.
      J. Biol. Chem. 278:52919-52923(2003) [PubMed] [Europe PMC] [Abstract]
      Cited for: INTERACTION WITH CDKN1C.
    16. Cited for: SPLICE ISOFORM(S) THAT ARE POTENTIAL NMD TARGET(S).
    17. "Interplay between components of a novel LIM kinase-slingshot phosphatase complex regulates cofilin."
      Soosairajah J., Maiti S., Wiggan O., Sarmiere P., Moussi N., Sarcevic B., Sampath R., Bamburg J.R., Bernard O.
      EMBO J. 24:473-486(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: FUNCTION, INTERACTION WITH SSH1, PHOSPHORYLATION AT THR-508, DEPHOSPHORYLATION.
    18. "Spatial and temporal regulation of cofilin activity by LIM kinase and Slingshot is critical for directional cell migration."
      Nishita M., Tomizawa C., Yamamoto M., Horita Y., Ohashi K., Mizuno K.
      J. Cell Biol. 171:349-359(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: FUNCTION, SUBCELLULAR LOCATION.
    19. "MAPKAPK-2-mediated LIM-kinase activation is critical for VEGF-induced actin remodeling and cell migration."
      Kobayashi M., Nishita M., Mishima T., Ohashi K., Mizuno K.
      EMBO J. 25:713-726(2006) [PubMed] [Europe PMC] [Abstract]
      Cited for: PHOSPHORYLATION AT SER-323 BY MAPKAPK2.
    20. "Hsp90 increases LIM kinase activity by promoting its homo-dimerization."
      Li R., Soosairajah J., Harari D., Citri A., Price J., Ng H.L., Morton C.J., Parker M.W., Yarden Y., Bernard O.
      FASEB J. 20:1218-1220(2006) [PubMed] [Europe PMC] [Abstract]
      Cited for: INTERACTION WITH HSP90AA1.
    21. "The phosphorylation of p25/TPPP by LIM kinase 1 inhibits its ability to assemble microtubules."
      Acevedo K., Li R., Soo P., Suryadinata R., Sarcevic B., Valova V.A., Graham M.E., Robinson P.J., Bernard O.
      Exp. Cell Res. 313:4091-4106(2007) [PubMed] [Europe PMC] [Abstract]
      Cited for: FUNCTION IN PHOSPHORYLATION OF TPPP.
    22. Cited for: REVIEW ON FUNCTION.
    23. "Kinase-selective enrichment enables quantitative phosphoproteomics of the kinome across the cell cycle."
      Daub H., Olsen J.V., Bairlein M., Gnad F., Oppermann F.S., Korner R., Greff Z., Keri G., Stemmann O., Mann M.
      Mol. Cell 31:438-448(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-210; THR-229; SER-310 AND SER-337, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
      Tissue: Cervix carcinoma.
    24. Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-307 AND SER-310, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
      Tissue: Cervix carcinoma.
    25. "Lys-N and trypsin cover complementary parts of the phosphoproteome in a refined SCX-based approach."
      Gauci S., Helbig A.O., Slijper M., Krijgsveld J., Heck A.J., Mohammed S.
      Anal. Chem. 81:4493-4501(2009) [PubMed] [Europe PMC] [Abstract]
      Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
    26. Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-210; THR-229; SER-302 AND SER-310, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
    27. "LIM kinases are attractive targets with many macromolecular partners and only a few small molecule regulators."
      Manetti F.
      Med. Res. Rev. 0:0-0(2011) [PubMed] [Europe PMC] [Abstract]
      Cited for: REVIEW ON FUNCTION.
    28. "Nuclear and cytoplasmic LIMK1 enhances human breast cancer progression."
      McConnell B.V., Koto K., Gutierrez-Hartmann A.
      Mol. Cancer 10:75-75(2011) [PubMed] [Europe PMC] [Abstract]
      Cited for: SUBCELLULAR LOCATION.
    29. "Beta-arrestin-dependent activation of the cofilin pathway is required for the scavenging activity of the atypical chemokine receptor D6."
      Borroni E.M., Cancellieri C., Vacchini A., Benureau Y., Lagane B., Bachelerie F., Arenzana-Seisdedos F., Mizuno K., Mantovani A., Bonecchi R., Locati M.
      Sci. Signal. 6:RA30-RA30(2013) [PubMed] [Europe PMC] [Abstract]
      Cited for: FUNCTION, PHOSPHORYLATION AT THR-508.
    30. "Patterns of somatic mutation in human cancer genomes."
      Greenman C., Stephens P., Smith R., Dalgliesh G.L., Hunter C., Bignell G., Davies H., Teague J., Butler A., Stevens C., Edkins S., O'Meara S., Vastrik I., Schmidt E.E., Avis T., Barthorpe S., Bhamra G., Buck G.
      , Choudhury B., Clements J., Cole J., Dicks E., Forbes S., Gray K., Halliday K., Harrison R., Hills K., Hinton J., Jenkinson A., Jones D., Menzies A., Mironenko T., Perry J., Raine K., Richardson D., Shepherd R., Small A., Tofts C., Varian J., Webb T., West S., Widaa S., Yates A., Cahill D.P., Louis D.N., Goldstraw P., Nicholson A.G., Brasseur F., Looijenga L., Weber B.L., Chiew Y.-E., DeFazio A., Greaves M.F., Green A.R., Campbell P., Birney E., Easton D.F., Chenevix-Trench G., Tan M.-H., Khoo S.K., Teh B.T., Yuen S.T., Leung S.Y., Wooster R., Futreal P.A., Stratton M.R.
      Nature 446:153-158(2007) [PubMed] [Europe PMC] [Abstract]
      Cited for: VARIANTS [LARGE SCALE ANALYSIS] ALA-190; ASN-247 AND GLN-422.
    31. "Crystal structure of the human limk1 kinase domain in complex with staurosporine."
      Structural genomics consortium (SGC)
      Submitted (JUL-2011) to the PDB data bank
      Cited for: X-RAY CRYSTALLOGRAPHY (1.65 ANGSTROMS) OF 330-637.

    Entry informationi

    Entry nameiLIMK1_HUMAN
    AccessioniPrimary (citable) accession number: P53667
    Secondary accession number(s): B7Z6I8
    , D3DXF4, D3DXF5, O15283, Q15820, Q15821, Q75MU3, Q9Y5Q1
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: October 1, 1996
    Last sequence update: March 7, 2006
    Last modified: October 1, 2014
    This is version 160 of the entry and version 3 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programChordata Protein Annotation Program
    DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

    Miscellaneousi

    Keywords - Technical termi

    3D-structure, Complete proteome, Reference proteome

    Documents

    1. Human chromosome 7
      Human chromosome 7: entries, gene names and cross-references to MIM
    2. Human entries with polymorphisms or disease mutations
      List of human entries with polymorphisms or disease mutations
    3. Human polymorphisms and disease mutations
      Index of human polymorphisms and disease mutations
    4. MIM cross-references
      Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot
    5. PDB cross-references
      Index of Protein Data Bank (PDB) cross-references
    6. Human and mouse protein kinases
      Human and mouse protein kinases: classification and index
    7. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3