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P53622

- COPA_YEAST

UniProt

P53622 - COPA_YEAST

Protein

Coatomer subunit alpha

Gene

COP1

Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Status
Reviewed - Annotation score: 5 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 138 (01 Oct 2014)
      Sequence version 2 (01 Nov 1997)
      Previous versions | rss
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    Functioni

    The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.1 Publication

    GO - Molecular functioni

    1. protein binding Source: IntAct
    2. structural molecule activity Source: InterPro
    3. ubiquitin binding Source: SGD

    GO - Biological processi

    1. ER to Golgi vesicle-mediated transport Source: SGD
    2. intracellular protein transport Source: InterPro
    3. retrograde vesicle-mediated transport, Golgi to ER Source: SGD

    Keywords - Biological processi

    ER-Golgi transport, Protein transport, Transport

    Enzyme and pathway databases

    BioCyciYEAST:G3O-29542-MONOMER.
    ReactomeiREACT_33101. COPI Mediated Transport.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Coatomer subunit alpha
    Alternative name(s):
    Alpha-coat protein
    Short name:
    Alpha-COP
    Retrieval from endoplasmic reticulum protein 1
    Secretory protein 22
    Suppressor of osmo-sensitivity 1
    Gene namesi
    Name:COP1
    Synonyms:RET1, SEC33, SOO1
    Ordered Locus Names:YDL145C
    ORF Names:D1578
    OrganismiSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
    Taxonomic identifieri559292 [NCBI]
    Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces
    ProteomesiUP000002311: Chromosome IV

    Organism-specific databases

    CYGDiYDL145c.
    SGDiS000002304. COP1.

    Subcellular locationi

    Cytoplasm. Golgi apparatus membrane; Peripheral membrane protein; Cytoplasmic side. Cytoplasmic vesicleCOPI-coated vesicle membrane; Peripheral membrane protein; Cytoplasmic side
    Note: The coatomer is cytoplasmic or polymerized on the cytoplasmic side of the Golgi, as well as on the vesicles/buds originating from it.

    GO - Cellular componenti

    1. COPI vesicle coat Source: SGD

    Keywords - Cellular componenti

    Cytoplasm, Cytoplasmic vesicle, Golgi apparatus, Membrane

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 12011201Coatomer subunit alphaPRO_0000050910Add
    BLAST

    Proteomic databases

    MaxQBiP53622.
    PaxDbiP53622.
    PeptideAtlasiP53622.

    Expressioni

    Gene expression databases

    GenevestigatoriP53622.

    Interactioni

    Subunit structurei

    Oligomeric complex that consists of at least the alpha, beta, beta', gamma, delta, epsilon and zeta subunits. Interacts with the ESCRT-0 subunit VPS27. Interacts with KEI1 (via C-terminal region).2 Publications

    Binary interactionsi

    WithEntry#Exp.IntActNotes
    SEC27P4181117EBI-4860,EBI-4898
    SEC28P405095EBI-4860,EBI-4884
    WBP1P337673EBI-4860,EBI-12658

    Protein-protein interaction databases

    BioGridi31916. 164 interactions.
    DIPiDIP-2582N.
    IntActiP53622. 37 interactions.
    MINTiMINT-422687.
    STRINGi4932.YDL145C.

    Structurei

    Secondary structure

    1
    1201
    Legend: HelixTurnBeta strand
    Show more details
    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Helixi649 – 65810
    Helixi662 – 67211
    Helixi675 – 68713
    Helixi691 – 70010
    Helixi704 – 71411
    Helixi717 – 72913
    Helixi733 – 74311
    Helixi746 – 75510
    Helixi759 – 76810
    Helixi772 – 78110
    Helixi786 – 7883
    Helixi900 – 9078
    Helixi911 – 9166
    Helixi920 – 93112
    Helixi937 – 9393
    Helixi940 – 94910
    Beta strandi951 – 9544
    Beta strandi957 – 9615
    Beta strandi964 – 9674
    Beta strandi969 – 9713
    Beta strandi973 – 9753
    Helixi977 – 9793
    Helixi987 – 100216
    Helixi1006 – 102116
    Beta strandi1025 – 10273
    Helixi1029 – 105527
    Turni1059 – 10613
    Helixi1062 – 107110
    Helixi1072 – 10743
    Helixi1079 – 109517
    Helixi1099 – 111012
    Helixi1117 – 113014
    Beta strandi1147 – 11493
    Turni1151 – 11533
    Beta strandi1156 – 11616
    Beta strandi1163 – 11653
    Turni1167 – 11693
    Beta strandi1172 – 11743
    Helixi1175 – 11773
    Beta strandi1179 – 11813
    Beta strandi1183 – 11864
    Beta strandi1188 – 11914

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    3MKQX-ray2.50B/D/F642-818[»]
    3MV2X-ray2.90A/C/E900-1201[»]
    3MV3X-ray3.25A/C/E900-1201[»]
    ProteinModelPortaliP53622.
    SMRiP53622. Positions 1-818, 899-1201.
    ModBaseiSearch...
    MobiDBiSearch...

    Miscellaneous databases

    EvolutionaryTraceiP53622.

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Repeati9 – 3931WD 1Add
    BLAST
    Repeati51 – 8131WD 2Add
    BLAST
    Repeati93 – 12331WD 3Add
    BLAST
    Repeati135 – 16531WD 4Add
    BLAST
    Repeati207 – 23731WD 5Add
    BLAST
    Repeati251 – 28131WD 6Add
    BLAST

    Sequence similaritiesi

    Contains 6 WD repeats.PROSITE-ProRule annotation

    Keywords - Domaini

    Repeat, WD repeat

    Phylogenomic databases

    eggNOGiCOG2319.
    GeneTreeiENSGT00520000055597.
    HOGENOMiHOG000195913.
    KOiK05236.
    OMAiFWVLGAH.
    OrthoDBiEOG7TN016.

    Family and domain databases

    Gene3Di2.130.10.10. 2 hits.
    InterProiIPR016391. Coatomer_asu.
    IPR010714. Coatomer_asu_C.
    IPR006692. Coatomer_WD-assoc_reg.
    IPR020472. G-protein_beta_WD-40_rep.
    IPR011044. Quino_amine_DH_bsu.
    IPR015943. WD40/YVTN_repeat-like_dom.
    IPR001680. WD40_repeat.
    IPR019775. WD40_repeat_CS.
    IPR017986. WD40_repeat_dom.
    [Graphical view]
    PfamiPF04053. Coatomer_WDAD. 1 hit.
    PF06957. COPI_C. 1 hit.
    PF00400. WD40. 5 hits.
    [Graphical view]
    PIRSFiPIRSF003354. Coatomer_alpha_subunit. 1 hit.
    PRINTSiPR00320. GPROTEINBRPT.
    SMARTiSM00320. WD40. 7 hits.
    [Graphical view]
    SUPFAMiSSF50969. SSF50969. 1 hit.
    SSF50978. SSF50978. 2 hits.
    PROSITEiPS00678. WD_REPEATS_1. 2 hits.
    PS50082. WD_REPEATS_2. 5 hits.
    PS50294. WD_REPEATS_REGION. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    P53622-1 [UniParc]FASTAAdd to Basket

    « Hide

    MKMLTKFESK STRAKGIAFH PSRPWVLVAL FSSTIQLWDY RMGTLLHRFE     50
    DHEGPVRGLD FHPTQPIFVS AGDDYTIKVW SLDTNKCLYT LTGHLDYVRT 100
    VFFHRELPWI ISASDDQTIR IWNWQNRKEI ACLTGHNHFV MCAQFHPTDD 150
    LIVSASLDET IRIWDISGLR KRHSAPGTSS FEEQMSAQQN LLDGSLGDCV 200
    VKFILEGHTR GVNWASFHPT LPLIVSGSDD RQVKLWRMSA TKAWEVDTCR 250
    GHTNNVDSVI FHPHQNLIIS VGEDKTLRVW DLDKRTPVKQ FKRENDRFWL 300
    IAAHPHINLF GAAHDSGIMV FKLDRERPCS FIHQNQLFFV NAEKQIQSFN 350
    FQKRVASLPY ASLKGIGQPW DAFRSISYNP SQHSVLVNEA NGKFALVILP 400
    KQPVGAVEPT SVTQDTGNFA TFVGRNRFVV YNKNTESVEV RSLENKVTRN 450
    IKVEETVRTI VAAGPGSVLV IHPREVILYD VQQGKKVSQL AVKNVKYVSW 500
    SLDGQYVALM SKHTITLATK KLELINSMHE TIRIKSAAWD ETGVLIYSTL 550
    NHIRYSLLNG DRGIIKTLEK TLYITKVQGK LVYCLNREGE IEILTIDPTE 600
    YRFKKALVNK NFPEVLRLIK DSNLVGQNII SYLQKSGYPE IALQFVQDPH 650
    IRFDLALEYG NLDVALDEAK KLNDSSTWER LIQEALAQGN ASLAEMIYQT 700
    QHSFDKLSFL YLVTGDVNKL SKMQNIAQTR EDFGSMLLNT FYNNSTKERS 750
    SIFAEGGSLP LAYAVAKANG DEAAASAFLE QAEVDEQDVT LPDQMDASNF 800
    VQRPVISKPL EKWPLKEAEL SYFEKAVLGQ IDDLTIDDET PAVNTTQEQE 850
    EPLGEENFND EDIGEDEGAW DLGDEDLDVG EELPEEVEQG EITSPAQEVE 900
    TAIWIKNSKL PAVLVAAGAF DAAVQALSKQ VGVVKLEPLK KYFTNIYEGC 950
    RTYIPSTPCE LPAQLGYVRA YDDTVSEDQI LPYVPGLDVV NEKMNEGYKN 1000
    FKLNKPDIAI ECFREAIYRI TLLMVDDAED EKLAHKILET AREYILGLSI 1050
    ELERRSLKEG NTVRMLELAA YFTKAKLSPI HRTNALQVAM SQHFKHKNFL 1100
    QASYFAGEFL KIISSGPRAE QARKIKNKAD SMASDAIPID FDPYAKFDIC 1150
    AATYKPIYED TPSVSDPLTG SKYVITEKDK IDRIAMISKI GAPASGLRIR 1200
    V 1201
    Length:1,201
    Mass (Da):135,607
    Last modified:November 1, 1997 - v2
    Checksum:iD3589073106F5570
    GO

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Sequence conflicti753 – 7531F → L in CAA86588. (PubMed:8001155)Curated
    Sequence conflicti753 – 7531F → L in CAA58712. (PubMed:7724544)Curated
    Sequence conflicti905 – 9051I → T in CAA86588. (PubMed:8001155)Curated
    Sequence conflicti905 – 9051I → T in CAA58712. (PubMed:7724544)Curated
    Sequence conflicti1006 – 10061P → L in CAA86588. (PubMed:8001155)Curated
    Sequence conflicti1006 – 10061P → L in CAA58712. (PubMed:7724544)Curated
    Sequence conflicti1027 – 10282DA → NT in CAA86588. (PubMed:8001155)Curated
    Sequence conflicti1027 – 10282DA → NT in CAA58712. (PubMed:7724544)Curated

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    Z46617 Genomic DNA. Translation: CAA86588.1.
    X83754 Genomic DNA. Translation: CAA58712.1.
    Z74193 Genomic DNA. Translation: CAA98719.1.
    Z74192 Genomic DNA. Translation: CAA98718.1.
    X97751 Genomic DNA. Translation: CAA66346.1.
    BK006938 Genomic DNA. Translation: DAA11713.1.
    PIRiS67692. ERBYA.
    RefSeqiNP_010136.1. NM_001180205.1.

    Genome annotation databases

    EnsemblFungiiYDL145C; YDL145C; YDL145C.
    GeneIDi851410.
    KEGGisce:YDL145C.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    Z46617 Genomic DNA. Translation: CAA86588.1 .
    X83754 Genomic DNA. Translation: CAA58712.1 .
    Z74193 Genomic DNA. Translation: CAA98719.1 .
    Z74192 Genomic DNA. Translation: CAA98718.1 .
    X97751 Genomic DNA. Translation: CAA66346.1 .
    BK006938 Genomic DNA. Translation: DAA11713.1 .
    PIRi S67692. ERBYA.
    RefSeqi NP_010136.1. NM_001180205.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    3MKQ X-ray 2.50 B/D/F 642-818 [» ]
    3MV2 X-ray 2.90 A/C/E 900-1201 [» ]
    3MV3 X-ray 3.25 A/C/E 900-1201 [» ]
    ProteinModelPortali P53622.
    SMRi P53622. Positions 1-818, 899-1201.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    BioGridi 31916. 164 interactions.
    DIPi DIP-2582N.
    IntActi P53622. 37 interactions.
    MINTi MINT-422687.
    STRINGi 4932.YDL145C.

    Proteomic databases

    MaxQBi P53622.
    PaxDbi P53622.
    PeptideAtlasi P53622.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblFungii YDL145C ; YDL145C ; YDL145C .
    GeneIDi 851410.
    KEGGi sce:YDL145C.

    Organism-specific databases

    CYGDi YDL145c.
    SGDi S000002304. COP1.

    Phylogenomic databases

    eggNOGi COG2319.
    GeneTreei ENSGT00520000055597.
    HOGENOMi HOG000195913.
    KOi K05236.
    OMAi FWVLGAH.
    OrthoDBi EOG7TN016.

    Enzyme and pathway databases

    BioCyci YEAST:G3O-29542-MONOMER.
    Reactomei REACT_33101. COPI Mediated Transport.

    Miscellaneous databases

    EvolutionaryTracei P53622.
    NextBioi 968591.
    PROi P53622.

    Gene expression databases

    Genevestigatori P53622.

    Family and domain databases

    Gene3Di 2.130.10.10. 2 hits.
    InterProi IPR016391. Coatomer_asu.
    IPR010714. Coatomer_asu_C.
    IPR006692. Coatomer_WD-assoc_reg.
    IPR020472. G-protein_beta_WD-40_rep.
    IPR011044. Quino_amine_DH_bsu.
    IPR015943. WD40/YVTN_repeat-like_dom.
    IPR001680. WD40_repeat.
    IPR019775. WD40_repeat_CS.
    IPR017986. WD40_repeat_dom.
    [Graphical view ]
    Pfami PF04053. Coatomer_WDAD. 1 hit.
    PF06957. COPI_C. 1 hit.
    PF00400. WD40. 5 hits.
    [Graphical view ]
    PIRSFi PIRSF003354. Coatomer_alpha_subunit. 1 hit.
    PRINTSi PR00320. GPROTEINBRPT.
    SMARTi SM00320. WD40. 7 hits.
    [Graphical view ]
    SUPFAMi SSF50969. SSF50969. 1 hit.
    SSF50978. SSF50978. 2 hits.
    PROSITEi PS00678. WD_REPEATS_1. 2 hits.
    PS50082. WD_REPEATS_2. 5 hits.
    PS50294. WD_REPEATS_REGION. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Coatomer is essential for retrieval of dilysine-tagged proteins to the endoplasmic reticulum."
      Letourneur F., Gaynor E.C., Hennecke S., Demolliere C., Durden R., Emr S.D., Riezman H., Cosson P.
      Cell 79:1199-1207(1994) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA], PROTEIN SEQUENCE OF 1-20.
      Strain: PC70.
    2. "Non-clathrin-coat protein alpha is a conserved subunit of coatomer and in Saccharomyces cerevisiae is essential for growth."
      Gerich B., Orci L., Tschochner H., Lottspeich F., Ravazolla M., Amherdt M., Wieland F., Harter C.
      Proc. Natl. Acad. Sci. U.S.A. 92:3229-3233(1995) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA], PROTEIN SEQUENCE OF 1-24, SUBCELLULAR LOCATION.
      Strain: RS453.
    3. "The nucleotide sequence of Saccharomyces cerevisiae chromosome IV."
      Jacq C., Alt-Moerbe J., Andre B., Arnold W., Bahr A., Ballesta J.P.G., Bargues M., Baron L., Becker A., Biteau N., Bloecker H., Blugeon C., Boskovic J., Brandt P., Brueckner M., Buitrago M.J., Coster F., Delaveau T.
      , del Rey F., Dujon B., Eide L.G., Garcia-Cantalejo J.M., Goffeau A., Gomez-Peris A., Granotier C., Hanemann V., Hankeln T., Hoheisel J.D., Jaeger W., Jimenez A., Jonniaux J.-L., Kraemer C., Kuester H., Laamanen P., Legros Y., Louis E.J., Moeller-Rieker S., Monnet A., Moro M., Mueller-Auer S., Nussbaumer B., Paricio N., Paulin L., Perea J., Perez-Alonso M., Perez-Ortin J.E., Pohl T.M., Prydz H., Purnelle B., Rasmussen S.W., Remacha M.A., Revuelta J.L., Rieger M., Salom D., Saluz H.P., Saiz J.E., Saren A.-M., Schaefer M., Scharfe M., Schmidt E.R., Schneider C., Scholler P., Schwarz S., Soler-Mira A., Urrestarazu L.A., Verhasselt P., Vissers S., Voet M., Volckaert G., Wagner G., Wambutt R., Wedler E., Wedler H., Woelfl S., Harris D.E., Bowman S., Brown D., Churcher C.M., Connor R., Dedman K., Gentles S., Hamlin N., Hunt S., Jones L., McDonald S., Murphy L.D., Niblett D., Odell C., Oliver K., Rajandream M.A., Richards C., Shore L., Walsh S.V., Barrell B.G., Dietrich F.S., Mulligan J.T., Allen E., Araujo R., Aviles E., Berno A., Carpenter J., Chen E., Cherry J.M., Chung E., Duncan M., Hunicke-Smith S., Hyman R.W., Komp C., Lashkari D., Lew H., Lin D., Mosedale D., Nakahara K., Namath A., Oefner P., Oh C., Petel F.X., Roberts D., Schramm S., Schroeder M., Shogren T., Shroff N., Winant A., Yelton M.A., Botstein D., Davis R.W., Johnston M., Andrews S., Brinkman R., Cooper J., Ding H., Du Z., Favello A., Fulton L., Gattung S., Greco T., Hallsworth K., Hawkins J., Hillier L.W., Jier M., Johnson D., Johnston L., Kirsten J., Kucaba T., Langston Y., Latreille P., Le T., Mardis E., Menezes S., Miller N., Nhan M., Pauley A., Peluso D., Rifkin L., Riles L., Taich A., Trevaskis E., Vignati D., Wilcox L., Wohldman P., Vaudin M., Wilson R., Waterston R., Albermann K., Hani J., Heumann K., Kleine K., Mewes H.-W., Zollner A., Zaccaria P.
      Nature 387:75-78(1997) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 204508 / S288c.
    4. Cited for: GENOME REANNOTATION.
      Strain: ATCC 204508 / S288c.
    5. "Analysis of a 23 kb region on the left arm of yeast chromosome IV."
      Delaveau T.T.D., Blugeon C., Jacq C., Perea J.
      Yeast 12:1587-1592(1996) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 799-1201.
      Strain: ATCC 96604 / S288c / FY1679.
    6. Cited for: SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS].
    7. Cited for: LEVEL OF PROTEIN EXPRESSION [LARGE SCALE ANALYSIS].
    8. "Involvement of specific COPI subunits in protein sorting from the late endosome to the vacuole in yeast."
      Gabriely G., Kama R., Gerst J.E.
      Mol. Cell. Biol. 27:526-540(2007) [PubMed] [Europe PMC] [Abstract]
      Cited for: FUNCTION, SUBCELLULAR LOCATION, INTERACTION WITH VPS27.
    9. "A multidimensional chromatography technology for in-depth phosphoproteome analysis."
      Albuquerque C.P., Smolka M.B., Payne S.H., Bafna V., Eng J., Zhou H.
      Mol. Cell. Proteomics 7:1389-1396(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
    10. "Kei1: a novel subunit of inositolphosphorylceramide synthase, essential for its enzyme activity and Golgi localization."
      Sato K., Noda Y., Yoda K.
      Mol. Biol. Cell 20:4444-4457(2009) [PubMed] [Europe PMC] [Abstract]
      Cited for: INTERACTION WITH KEI1.
    11. "Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution."
      Holt L.J., Tuch B.B., Villen J., Johnson A.D., Gygi S.P., Morgan D.O.
      Science 325:1682-1686(2009) [PubMed] [Europe PMC] [Abstract]
      Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
    12. Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].

    Entry informationi

    Entry nameiCOPA_YEAST
    AccessioniPrimary (citable) accession number: P53622
    Secondary accession number(s): D6VRK3, Q07595
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: October 1, 1996
    Last sequence update: November 1, 1997
    Last modified: October 1, 2014
    This is version 138 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programFungal Protein Annotation Program

    Miscellaneousi

    Miscellaneous

    Present with 15200 molecules/cell in log phase SD medium.1 Publication

    Keywords - Technical termi

    3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

    Documents

    1. PDB cross-references
      Index of Protein Data Bank (PDB) cross-references
    2. SIMILARITY comments
      Index of protein domains and families
    3. Yeast
      Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD
    4. Yeast chromosome IV
      Yeast (Saccharomyces cerevisiae) chromosome IV: entries and gene names

    External Data

    Dasty 3