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P53395

- ODB2_MOUSE

UniProt

P53395 - ODB2_MOUSE

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Protein
Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial
Gene
Dbt
Organism
Mus musculus (Mouse)
Status
Reviewed - Annotation score: 4 out of 5 - Experimental evidence at protein leveli

Functioni

The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO2. It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3). Within this complex, the catalytic function of this enzyme is to accept, and to transfer to coenzyme A, acyl groups that are generated by the branched-chain alpha-keto acid decarboxylase component.

Catalytic activityi

2-methylpropanoyl-CoA + enzyme N(6)-(dihydrolipoyl)lysine = CoA + enzyme N(6)-(S-(2-methylpropanoyl)dihydrolipoyl)lysine.

Cofactori

Binds 1 lipoyl cofactor covalently By similarity.

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei452 – 4521 Reviewed prediction
Active sitei456 – 4561 Reviewed prediction

GO - Molecular functioni

  1. dihydrolipoyllysine-residue (2-methylpropanoyl)transferase activity Source: UniProtKB-EC
Complete GO annotation...

Keywords - Molecular functioni

Acyltransferase, Transferase

Names & Taxonomyi

Protein namesi
Recommended name:
Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial (EC:2.3.1.168)
Alternative name(s):
Branched-chain alpha-keto acid dehydrogenase complex component E2
Short name:
BCKAD-E2
Short name:
BCKADE2
Dihydrolipoamide acetyltransferase component of branched-chain alpha-keto acid dehydrogenase complex
Dihydrolipoamide branched chain transacylase
Dihydrolipoyllysine-residue (2-methylpropanoyl)transferase
Gene namesi
Name:Dbt
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
ProteomesiUP000000589: Chromosome 3

Organism-specific databases

MGIiMGI:105386. Dbt.

Subcellular locationi

GO - Cellular componenti

  1. microtubule cytoskeleton Source: Ensembl
  2. mitochondrial nucleoid Source: Ensembl
  3. mitochondrion Source: MGI
Complete GO annotation...

Keywords - Cellular componenti

Mitochondrion

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transit peptidei1 – 6161Mitochondrion Reviewed prediction
Add
BLAST
Chaini62 – 482421Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial
PRO_0000020490Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei105 – 1051N6-lipoyllysine By similarity
Modified residuei133 – 1331N6-succinyllysine1 Publication
Modified residuei196 – 1961N6-acetyllysine; alternate1 Publication
Modified residuei196 – 1961N6-succinyllysine; alternate1 Publication
Modified residuei202 – 2021N6-acetyllysine1 Publication
Modified residuei243 – 2431N6-acetyllysine1 Publication
Modified residuei250 – 2501N6-acetyllysine1 Publication
Modified residuei261 – 2611N6-succinyllysine1 Publication
Modified residuei289 – 2891N6-acetyllysine; alternate1 Publication
Modified residuei289 – 2891N6-succinyllysine; alternate1 Publication
Modified residuei295 – 2951N6-acetyllysine1 Publication
Modified residuei304 – 3041N6-acetyllysine1 Publication
Modified residuei435 – 4351N6-acetyllysine1 Publication
Modified residuei440 – 4401N6-acetyllysine; alternate1 Publication
Modified residuei440 – 4401N6-succinyllysine; alternate1 Publication

Keywords - PTMi

Acetylation

Proteomic databases

MaxQBiP53395.
PaxDbiP53395.
PRIDEiP53395.

PTM databases

PhosphoSiteiP53395.

Expressioni

Gene expression databases

BgeeiP53395.
CleanExiMM_DBT.
GenevestigatoriP53395.

Interactioni

Subunit structurei

Forms a 24-polypeptide structural core with octahedral symmetry.

Protein-protein interaction databases

BioGridi199061. 4 interactions.
IntActiP53395. 5 interactions.
MINTiMINT-1860345.
STRINGi10090.ENSMUSP00000000349.

Structurei

3D structure databases

ProteinModelPortaliP53395.
SMRiP53395. Positions 62-147, 165-213, 249-482.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini65 – 13874Lipoyl-binding
Add
BLAST

Sequence similaritiesi

Keywords - Domaini

Lipoyl, Transit peptide

Phylogenomic databases

eggNOGiCOG0508.
GeneTreeiENSGT00740000115255.
HOGENOMiHOG000281564.
HOVERGENiHBG104085.
InParanoidiQ3TMF5.
KOiK09699.
OMAiEPLKGFH.
OrthoDBiEOG7GFB4W.
TreeFamiTF314182.

Family and domain databases

Gene3Di3.30.559.10. 1 hit.
4.10.320.10. 1 hit.
InterProiIPR003016. 2-oxoA_DH_lipoyl-BS.
IPR001078. 2-oxoacid_DH_actylTfrase.
IPR015761. BCKDC_E2.
IPR000089. Biotin_lipoyl.
IPR023213. CAT-like_dom.
IPR004167. E3-bd.
IPR011053. Single_hybrid_motif.
[Graphical view]
PANTHERiPTHR23151:SF46. PTHR23151:SF46. 1 hit.
PfamiPF00198. 2-oxoacid_dh. 1 hit.
PF00364. Biotin_lipoyl. 1 hit.
PF02817. E3_binding. 1 hit.
[Graphical view]
SUPFAMiSSF47005. SSF47005. 1 hit.
SSF51230. SSF51230. 1 hit.
PROSITEiPS50968. BIOTINYL_LIPOYL. 1 hit.
PS00189. LIPOYL. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P53395-1 [UniParc]FASTAAdd to Basket

« Hide

MAAARVLRTW SQNAVRLTCV RYFQTFNSAR VLKPKCVCSV GYPLFKYSQP    50
RHSLRTAAVL QGQVVQFKLS DIGEGIREVT IKEWYVKEGD TVSQFDSICE 100
VQSDKASVTI TSRYDGVIKR LYYNLDDIAY VGKPLIDIET EALKDSEEDV 150
VETPAVSHDE HTHQEIKGQK TLATPAVRRL AMENNIKLSE VVGSGKDGRI 200
LKEDILSFLE KQTGAILPPS PKSEITPPPP QPKDRTFPTP IAKPPVFTGK 250
DRTEPVTGFQ KAMVKTMSAA LKIPHFGYCD EIDLTQLVKL REELKPVALA 300
RGIKLSFMPF FLKAASLGLL QFPILNASVD ENCQNITYKA SHNIGIAMDT 350
ELGLIVPNVK NVQVRSVFEI AMELNRLQKL GSSGQLGTTD LTGGTFTLSN 400
IGSIGGTYAK PVILPPEVAI GALGAIKALP RFDQKGDVYK AQIMNVSWSA 450
DHRVIDGATM SRFSNLWKSY LENPAFMLLD LK 482
Length:482
Mass (Da):53,247
Last modified:July 27, 2011 - v2
Checksum:i79E440D1B4B9B948
GO

Sequence conflict

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti369 – 3713EIA → GIG in AAC37681. 1 Publication

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
L42996 mRNA. Translation: AAC37681.1.
AK165959 mRNA. Translation: BAE38487.1.
CH466532 Genomic DNA. Translation: EDL12381.1.
CCDSiCCDS17787.1.
PIRiS65760.
RefSeqiNP_034152.2. NM_010022.3.
UniGeneiMm.3636.

Genome annotation databases

EnsembliENSMUST00000000349; ENSMUSP00000000349; ENSMUSG00000000340.
GeneIDi13171.
KEGGimmu:13171.
UCSCiuc008rcg.2. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
L42996 mRNA. Translation: AAC37681.1 .
AK165959 mRNA. Translation: BAE38487.1 .
CH466532 Genomic DNA. Translation: EDL12381.1 .
CCDSi CCDS17787.1.
PIRi S65760.
RefSeqi NP_034152.2. NM_010022.3.
UniGenei Mm.3636.

3D structure databases

ProteinModelPortali P53395.
SMRi P53395. Positions 62-147, 165-213, 249-482.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

BioGridi 199061. 4 interactions.
IntActi P53395. 5 interactions.
MINTi MINT-1860345.
STRINGi 10090.ENSMUSP00000000349.

PTM databases

PhosphoSitei P53395.

Proteomic databases

MaxQBi P53395.
PaxDbi P53395.
PRIDEi P53395.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSMUST00000000349 ; ENSMUSP00000000349 ; ENSMUSG00000000340 .
GeneIDi 13171.
KEGGi mmu:13171.
UCSCi uc008rcg.2. mouse.

Organism-specific databases

CTDi 1629.
MGIi MGI:105386. Dbt.

Phylogenomic databases

eggNOGi COG0508.
GeneTreei ENSGT00740000115255.
HOGENOMi HOG000281564.
HOVERGENi HBG104085.
InParanoidi Q3TMF5.
KOi K09699.
OMAi EPLKGFH.
OrthoDBi EOG7GFB4W.
TreeFami TF314182.

Miscellaneous databases

NextBioi 283268.
PROi P53395.
SOURCEi Search...

Gene expression databases

Bgeei P53395.
CleanExi MM_DBT.
Genevestigatori P53395.

Family and domain databases

Gene3Di 3.30.559.10. 1 hit.
4.10.320.10. 1 hit.
InterProi IPR003016. 2-oxoA_DH_lipoyl-BS.
IPR001078. 2-oxoacid_DH_actylTfrase.
IPR015761. BCKDC_E2.
IPR000089. Biotin_lipoyl.
IPR023213. CAT-like_dom.
IPR004167. E3-bd.
IPR011053. Single_hybrid_motif.
[Graphical view ]
PANTHERi PTHR23151:SF46. PTHR23151:SF46. 1 hit.
Pfami PF00198. 2-oxoacid_dh. 1 hit.
PF00364. Biotin_lipoyl. 1 hit.
PF02817. E3_binding. 1 hit.
[Graphical view ]
SUPFAMi SSF47005. SSF47005. 1 hit.
SSF51230. SSF51230. 1 hit.
PROSITEi PS50968. BIOTINYL_LIPOYL. 1 hit.
PS00189. LIPOYL. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Molecular cloning of the murine branched chain alpha-ketoacid dehydrogenase E2 subunit: presence of 3' B1 repeat elements."
    Costeas P.A., Tonelli L.A., Chinsky J.M.
    Biochim. Biophys. Acta 1305:25-28(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
    Tissue: Liver.
  2. "The transcriptional landscape of the mammalian genome."
    Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.
    , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
    Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Lung.
  3. Mural R.J., Adams M.D., Myers E.W., Smith H.O., Venter J.C.
    Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  4. "SIRT5-mediated lysine desuccinylation impacts diverse metabolic pathways."
    Park J., Chen Y., Tishkoff D.X., Peng C., Tan M., Dai L., Xie Z., Zhang Y., Zwaans B.M., Skinner M.E., Lombard D.B., Zhao Y.
    Mol. Cell 50:919-930(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: SUCCINYLATION [LARGE SCALE ANALYSIS] AT LYS-133; LYS-196; LYS-261; LYS-289 AND LYS-440, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
    Tissue: Liver.
  5. "Label-free quantitative proteomics of the lysine acetylome in mitochondria identifies substrates of SIRT3 in metabolic pathways."
    Rardin M.J., Newman J.C., Held J.M., Cusack M.P., Sorensen D.J., Li B., Schilling B., Mooney S.D., Kahn C.R., Verdin E., Gibson B.W.
    Proc. Natl. Acad. Sci. U.S.A. 110:6601-6606(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: ACETYLATION [LARGE SCALE ANALYSIS] AT LYS-196; LYS-202; LYS-243; LYS-250; LYS-289; LYS-295; LYS-304; LYS-435 AND LYS-440, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
    Tissue: Liver.

Entry informationi

Entry nameiODB2_MOUSE
AccessioniPrimary (citable) accession number: P53395
Secondary accession number(s): Q3TMF5
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 1, 1996
Last sequence update: July 27, 2011
Last modified: July 9, 2014
This is version 116 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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