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P53270 (YG32_YEAST) Reviewed, UniProtKB/Swiss-Prot

Last modified February 19, 2014. Version 86. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Uncharacterized protein YGR117C
Gene names
Ordered Locus Names:YGR117C
ORF Names:G6172
OrganismSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) [Reference proteome]
Taxonomic identifier559292 [NCBI]
Taxonomic lineageEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces

Protein attributes

Sequence length476 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Miscellaneous

Present with 1280 molecules/cell in log phase SD medium.

Sequence similarities

Contains 1 LisH domain.

Ontologies

Keywords
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
None. [Check GOA]

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 476476Uncharacterized protein YGR117C
PRO_0000202817

Regions

Domain7 – 3933LisH

Sequences

Sequence LengthMass (Da)Tools
P53270 [UniParc].

Last modified October 1, 1996. Version 1.
Checksum: 8829E3CF2C273FD4

FASTA47653,438
        10         20         30         40         50         60 
MADNSTSRFY TNLLIANYLK HNGLEDTLAA FIRETALPLS ALEKSDSSNS NVGEIPLEDL 

        70         80         90        100        110        120 
QSVVEDRIYY KRRSFKDRFK TLSINDDLAP IDNAKYGIQP WNHSLKFSID VKLNKSLPKD 

       130        140        150        160        170        180 
TLFISATFTE DSKYILLSSA TGYLVIYDIE KATSKSFKIN EKVKSIVKLY GPIGSSGYQY 

       190        200        210        220        230        240 
VCPMNGSFYL LNNDFELVNN AVWKIHARMI THIKICNVTE SSWFVITSGM DNFLRLSLLE 

       250        260        270        280        290        300 
IKNGNTFLTK LSEIKLASNC TSLNVIANGD GNGQNSFSVF LTRAEYTHIA CYSIIDAKNL 

       310        320        330        340        350        360 
VHSYNIALNN AEFSTYAFNI RDVMAVDYVH SNTKDTIGLS PSTMLVVATS HKPYMRLILV 

       370        380        390        400        410        420 
EIPMNTGHPK AMKLDKVQTY YDKILRNFAT EIYQDDFSLP ILGKLESSNG VLVGNDEGIY 

       430        440        450        460        470 
SVDLMTGDSR ILNIPGEANS LHDRIKCMDI SKDQMRMVAG TSTKSIYILN VIRNAQ 

« Hide

References

« Hide 'large scale' references
[1]"The sequence of a 23.4 kb segment on the right arm of chromosome VII from Saccharomyces cerevisiae reveals CLB6, SPT6, RP28A and NUP57 genes, a Ty3 element and 11 new open reading frames."
Hansen M., Albers M., Backes U., Coblenz A., Leuther H., Neu R., Schreer A., Schaefer B., Zimmermann M., Wolf K.
Yeast 12:1273-1277(1996) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
[2]"The nucleotide sequence of Saccharomyces cerevisiae chromosome VII."
Tettelin H., Agostoni-Carbone M.L., Albermann K., Albers M., Arroyo J., Backes U., Barreiros T., Bertani I., Bjourson A.J., Brueckner M., Bruschi C.V., Carignani G., Castagnoli L., Cerdan E., Clemente M.L., Coblenz A., Coglievina M., Coissac E. expand/collapse author list , Defoor E., Del Bino S., Delius H., Delneri D., de Wergifosse P., Dujon B., Durand P., Entian K.-D., Eraso P., Escribano V., Fabiani L., Fartmann B., Feroli F., Feuermann M., Frontali L., Garcia-Gonzalez M., Garcia-Saez M.I., Goffeau A., Guerreiro P., Hani J., Hansen M., Hebling U., Hernandez K., Heumann K., Hilger F., Hofmann B., Indge K.J., James C.M., Klima R., Koetter P., Kramer B., Kramer W., Lauquin G., Leuther H., Louis E.J., Maillier E., Marconi A., Martegani E., Mazon M.J., Mazzoni C., McReynolds A.D.K., Melchioretto P., Mewes H.-W., Minenkova O., Mueller-Auer S., Nawrocki A., Netter P., Neu R., Nombela C., Oliver S.G., Panzeri L., Paoluzi S., Plevani P., Portetelle D., Portillo F., Potier S., Purnelle B., Rieger M., Riles L., Rinaldi T., Robben J., Rodrigues-Pousada C., Rodriguez-Belmonte E., Rodriguez-Torres A.M., Rose M., Ruzzi M., Saliola M., Sanchez-Perez M., Schaefer B., Schaefer M., Scharfe M., Schmidheini T., Schreer A., Skala J., Souciet J.-L., Steensma H.Y., Talla E., Thierry A., Vandenbol M., van der Aart Q.J.M., Van Dyck L., Vanoni M., Verhasselt P., Voet M., Volckaert G., Wambutt R., Watson M.D., Weber N., Wedler E., Wedler H., Wipfli P., Wolf K., Wright L.F., Zaccaria P., Zimmermann M., Zollner A., Kleine K.
Nature 387:81-84(1997) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 204508 / S288c.
[3]Saccharomyces Genome Database
Submitted (DEC-2009) to the EMBL/GenBank/DDBJ databases
Cited for: GENOME REANNOTATION.
Strain: ATCC 204508 / S288c.
[4]"Global analysis of protein expression in yeast."
Ghaemmaghami S., Huh W.-K., Bower K., Howson R.W., Belle A., Dephoure N., O'Shea E.K., Weissman J.S.
Nature 425:737-741(2003) [PubMed] [Europe PMC] [Abstract]
Cited for: LEVEL OF PROTEIN EXPRESSION [LARGE SCALE ANALYSIS].
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
Z72902 Genomic DNA. Translation: CAA97125.1.
BK006941 Genomic DNA. Translation: DAA08209.1.
PIRS64425.
RefSeqNP_011632.3. NM_001181246.3.

3D structure databases

ProteinModelPortalP53270.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

BioGrid33362. 4 interactions.
DIPDIP-1623N.
IntActP53270. 2 interactions.
MINTMINT-410210.
STRING4932.YGR117C.

Proteomic databases

PaxDbP53270.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblFungiYGR117C; YGR117C; YGR117C.
GeneID853014.
KEGGsce:YGR117C.

Organism-specific databases

CYGDYGR117c.
SGDS000003349. YGR117C.

Phylogenomic databases

eggNOGNOG46922.
OMADSYSQPI.
OrthoDBEOG71CG02.

Enzyme and pathway databases

BioCycYEAST:G3O-30824-MONOMER.

Gene expression databases

GenevestigatorP53270.

Family and domain databases

Gene3D2.130.10.10. 3 hits.
InterProIPR006594. LisH_dimerisation.
IPR013720. LisH_dimerisation_subgr.
IPR016520. UCP007778.
IPR015943. WD40/YVTN_repeat-like_dom.
IPR017986. WD40_repeat_dom.
[Graphical view]
PfamPF08513. LisH. 1 hit.
[Graphical view]
PIRSFPIRSF007778. UCP007778. 1 hit.
SMARTSM00667. LisH. 1 hit.
[Graphical view]
SUPFAMSSF50978. SSF50978. 2 hits.
PROSITEPS50896. LISH. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio972875.

Entry information

Entry nameYG32_YEAST
AccessionPrimary (citable) accession number: P53270
Secondary accession number(s): D6VUP8
Entry history
Integrated into UniProtKB/Swiss-Prot: October 1, 1996
Last sequence update: October 1, 1996
Last modified: February 19, 2014
This is version 86 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Relevant documents

Yeast chromosome VII

Yeast (Saccharomyces cerevisiae) chromosome VII: entries and gene names

Yeast

Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD

SIMILARITY comments

Index of protein domains and families