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Reviewed, UniProtKB/Swiss-Prot P53058 (VEL1_YEAST)

Last modified November 24, 2009. Version 50. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents

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Names and origin

Protein namesRecommended name:
    Protein VEL1
Alternative name(s):
    Velum formation protein 1
Gene names
Name: VEL1
Ordered Locus Names: YGL258W
ORF Names: NRA206
OrganismSaccharomyces cerevisiae (Baker's yeast) [Complete proteome]
Taxonomic identifier4932 [NCBI]
Taxonomic lineageEukaryota › Fungi › Dikarya › Ascomycota › Saccharomycotina › Saccharomycetes › Saccharomycetales › Saccharomycetaceae › Saccharomyces

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Protein attributes

Sequence length206 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceEvidence at protein level.

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General annotation (Comments)

Subcellular location

Cytoplasm › cytosol By similarity. Note: Intracellular soluble fraction By similarity.

Induction

In zinc-depleted conditions and has increased expression in NAP1 deletion mutants. Ref.3 Ref.5

Post-translational modification

N-glycosylated.

Sequence similarities

Belongs to the VEL1 family.

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Ontologies

Keywords
   Cellular componentCytoplasm
   DomainSignal
   LigandZinc
   PTMGlycoprotein
   Technical termComplete proteome
Gene Ontology (GO)
   Cellular componentcytosol

Inferred from electronic annotation. Source: UniProtKB-SubCell

soluble fraction Ref.4

Inferred from direct assay. Source: SGD

   Molecular functionzinc ion binding

Inferred from electronic annotation. Source: UniProtKB-KW

Complete GO annotation...

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Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 1919 Potential
Chain20 – 206187Protein VEL1
PRO_0000202704

Amino acid modifications

Glycosylation261N-linked (GlcNAc...) Potential
Glycosylation481N-linked (GlcNAc...) Potential
Glycosylation911N-linked (GlcNAc...) Potential
Glycosylation1391N-linked (GlcNAc...) Potential
Glycosylation1521N-linked (GlcNAc...) Potential

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Sequences

Sequence LengthMass (Da)Tools
P53058-1 [UniParc].

Last modified October 1, 1996. Version 1.
Checksum: D4DB805E578CCA2B

FASTA20622,152
        10         20         30         40         50         60 
MSFLSIFTFF SVLISVATTV RFDLTNVTCK GLHGPHCGTY VMEVVGQNGT FLGQSTFVGA 

        70         80         90        100        110        120 
DVLTESAGDA WARYLGQETR FLPKLTTIAS NETKNFSPLI FTTNINTCNP QSIGDAMVPF 

       130        140        150        160        170        180 
ANTVTGEIEY NSWADTADNA SFITGLANQL FNSTDYGVQV ASCYPNFASV ILSTPAVNIF 

       190        200 
GKDDTLPDYC TAIQLKAVCP PEAGFD

« Hide

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References

« Hide 'large scale' references
[1]"Sequence of a 39,411 bp DNA fragment covering the left end of chromosome VII of Saccharomyces cerevisiae."
Coissac E., Maillier E., Robineau S., Netter P.
Yeast 12:1555-1562(1996) [PubMed: 8972578] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
Strain: ATCC 96604 / S288c / FY1679.
[2]"The nucleotide sequence of Saccharomyces cerevisiae chromosome VII."
Tettelin H., Agostoni-Carbone M.L., Albermann K., Albers M., Arroyo J., Backes U., Barreiros T., Bertani I., Bjourson A.J., Brueckner M., Bruschi C.V., Carignani G., Castagnoli L., Cerdan E., Clemente M.L., Coblenz A., Coglievina M., Coissac E. expand/collapse author list , Defoor E., Del Bino S., Delius H., Delneri D., de Wergifosse P., Dujon B., Durand P., Entian K.-D., Eraso P., Escribano V., Fabiani L., Fartmann B., Feroli F., Feuermann M., Frontali L., Garcia-Gonzalez M., Garcia-Saez M.I., Goffeau A., Guerreiro P., Hani J., Hansen M., Hebling U., Hernandez K., Heumann K., Hilger F., Hofmann B., Indge K.J., James C.M., Klima R., Koetter P., Kramer B., Kramer W., Lauquin G., Leuther H., Louis E.J., Maillier E., Marconi A., Martegani E., Mazon M.J., Mazzoni C., McReynolds A.D.K., Melchioretto P., Mewes H.-W., Minenkova O., Mueller-Auer S., Nawrocki A., Netter P., Neu R., Nombela C., Oliver S.G., Panzeri L., Paoluzi S., Plevani P., Portetelle D., Portillo F., Potier S., Purnelle B., Rieger M., Riles L., Rinaldi T., Robben J., Rodrigues-Pousada C., Rodriguez-Belmonte E., Rodriguez-Torres A.M., Rose M., Ruzzi M., Saliola M., Sanchez-Perez M., Schaefer B., Schaefer M., Scharfe M., Schmidheini T., Schreer A., Skala J., Souciet J.-L., Steensma H.Y., Talla E., Thierry A., Vandenbol M., van der Aart Q.J.M., Van Dyck L., Vanoni M., Verhasselt P., Voet M., Volckaert G., Wambutt R., Watson M.D., Weber N., Wedler E., Wedler H., Wipfli P., Wolf K., Wright L.F., Zaccaria P., Zimmermann M., Zollner A., Kleine K.
Nature 387:81-84(1997) [PubMed: 9169869] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 96604 / S288c / FY1679.
[3]"Genome-wide expression analysis of NAP1 in Saccharomyces cerevisiae."
Ohkuni K., Shirahige K., Kikuchi A.
Biochem. Biophys. Res. Commun. 306:5-9(2003) [PubMed: 12788058] [Abstract]
Cited for: INDUCTION.
[4]"Sequence-based approach for identification of cell wall proteins in Saccharomyces cerevisiae."
Terashima H., Fukuchi S., Nakai K., Arisawa M., Hamada K., Yabuki N., Kitada K.
Curr. Genet. 40:311-316(2002) [PubMed: 11935221] [Abstract]
Cited for: SUBCELLULAR LOCATION.
[5]"Application of genome-wide expression analysis to identify molecular markers useful in monitoring industrial fermentations."
Higgins V.J., Rogers P.J., Dawes I.W.
Appl. Environ. Microbiol. 69:7535-7540(2003) [PubMed: 14660410] [Abstract]
Cited for: INDUCTION BY ZINC DEPLETION.
[6]"Global analysis of the glycoproteome in Saccharomyces cerevisiae reveals new roles for protein glycosylation in eukaryotes."
Kung L.A., Tao S.-C., Qian J., Smith M.G., Snyder M., Zhu H.
Mol. Syst. Biol. 5:308-308(2009) [PubMed: 19756047] [Abstract]
Cited for: GLYCOSYLATION [LARGE SCALE ANALYSIS].
+Additional computationally mapped references.

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Cross-references

Sequence databases

X94357 Genomic DNA. Translation: CAA64129.1.
Z72780 Genomic DNA. Translation: CAA96978.1.
PIRS61603.
RefSeqNP_011256.1.

3D structure databases

ModBaseSearch...

Protein-protein interaction databases

DIPDIP:4876N.
IntActP53058. 2 interactions.
STRINGP53058.

Genome annotation databases

EnsemblYGL258W; YGL258W; YGL258W; Saccharomyces cerevisiae. [Genome view]
GeneID852634.
KEGGsce:YGL258W.
NMPDRfig|4932.3.peg.2359.

Organism-specific databases

CYGDYGL258w.
SGDS000003227. VEL1.

Phylogenomic databases

HOGENOMP53058.
OMATIASNET
OrthoDBEOG9F4TVF

Gene expression databases

ArrayExpressP53058.
GenevestigatorP53058.
GermOnlineYGL258W. Saccharomyces cerevisiae.

Family and domain databases

InterProIPR019435. Velum_formation_protein.
[Graphical view]
PfamPF10339. Vel1p. 1 hit.
[Graphical view]
ProtoNetSearch...

Other Resources

NextBio971873.

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Entry information

Entry nameVEL1_YEAST
AccessionPrimary (citable) accession number: P53058
Entry history
Integrated into UniProtKB/Swiss-Prot: October 1, 1996
Last sequence update: October 1, 1996
Last modified: November 24, 2009
This is version 50 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation projectFPAP (Fungal Proteome Annotation Project)

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Relevant documents

SIMILARITY comments

Index of protein domains and families

Yeast

Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD

Yeast chromosome VII

Yeast (Saccharomyces cerevisiae) chromosome VII: entries and gene names

Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents