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P53058 (VEL1_YEAST) Reviewed, UniProtKB/Swiss-Prot

Last modified December 14, 2011. Version 64. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Protein VEL1
Alternative name(s):
Velum formation protein 1
Gene names
Name:VEL1
Ordered Locus Names:YGL258W
ORF Names:NRA206
OrganismSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Taxonomic identifier559292 [NCBI]
Taxonomic lineageEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces

Protein attributes

Sequence length206 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceEvidence at protein level

General annotation (Comments)

Subcellular location

Cytoplasmcytosol By similarity. Note: Intracellular soluble fraction By similarity. Ref.5

Induction

In zinc-depleted conditions and has increased expression in NAP1 deletion mutants. Ref.4 Ref.6

Post-translational modification

N-glycosylated. Ref.7

Sequence similarities

Belongs to the VEL1 family.

Ontologies

Keywords
   Cellular componentCytoplasm
   DomainSignal
   LigandZinc
   PTMGlycoprotein
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Cellular componentcytosol

Inferred from electronic annotation. Source: UniProtKB-SubCell

soluble fraction

Inferred from direct assay Ref.5. Source: SGD

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 1919 Potential
Chain20 – 206187Protein VEL1
PRO_0000202704

Amino acid modifications

Glycosylation261N-linked (GlcNAc...) Potential
Glycosylation481N-linked (GlcNAc...) Potential
Glycosylation911N-linked (GlcNAc...) Potential
Glycosylation1391N-linked (GlcNAc...) Potential
Glycosylation1521N-linked (GlcNAc...) Potential

Sequences

Sequence LengthMass (Da)Tools
P53058 [UniParc].

Last modified October 1, 1996. Version 1.
Checksum: D4DB805E578CCA2B

FASTA20622,152
        10         20         30         40         50         60 
MSFLSIFTFF SVLISVATTV RFDLTNVTCK GLHGPHCGTY VMEVVGQNGT FLGQSTFVGA 

        70         80         90        100        110        120 
DVLTESAGDA WARYLGQETR FLPKLTTIAS NETKNFSPLI FTTNINTCNP QSIGDAMVPF 

       130        140        150        160        170        180 
ANTVTGEIEY NSWADTADNA SFITGLANQL FNSTDYGVQV ASCYPNFASV ILSTPAVNIF 

       190        200 
GKDDTLPDYC TAIQLKAVCP PEAGFD 

« Hide

References

« Hide 'large scale' references
[1]"Sequence of a 39,411 bp DNA fragment covering the left end of chromosome VII of Saccharomyces cerevisiae."
Coissac E., Maillier E., Robineau S., Netter P.
Yeast 12:1555-1562(1996) [PubMed: 8972578] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
Strain: ATCC 96604 / S288c / FY1679.
[2]"The nucleotide sequence of Saccharomyces cerevisiae chromosome VII."
Tettelin H., Agostoni-Carbone M.L., Albermann K., Albers M., Arroyo J., Backes U., Barreiros T., Bertani I., Bjourson A.J., Brueckner M., Bruschi C.V., Carignani G., Castagnoli L., Cerdan E., Clemente M.L., Coblenz A., Coglievina M., Coissac E. expand/collapse author list , Defoor E., Del Bino S., Delius H., Delneri D., de Wergifosse P., Dujon B., Durand P., Entian K.-D., Eraso P., Escribano V., Fabiani L., Fartmann B., Feroli F., Feuermann M., Frontali L., Garcia-Gonzalez M., Garcia-Saez M.I., Goffeau A., Guerreiro P., Hani J., Hansen M., Hebling U., Hernandez K., Heumann K., Hilger F., Hofmann B., Indge K.J., James C.M., Klima R., Koetter P., Kramer B., Kramer W., Lauquin G., Leuther H., Louis E.J., Maillier E., Marconi A., Martegani E., Mazon M.J., Mazzoni C., McReynolds A.D.K., Melchioretto P., Mewes H.-W., Minenkova O., Mueller-Auer S., Nawrocki A., Netter P., Neu R., Nombela C., Oliver S.G., Panzeri L., Paoluzi S., Plevani P., Portetelle D., Portillo F., Potier S., Purnelle B., Rieger M., Riles L., Rinaldi T., Robben J., Rodrigues-Pousada C., Rodriguez-Belmonte E., Rodriguez-Torres A.M., Rose M., Ruzzi M., Saliola M., Sanchez-Perez M., Schaefer B., Schaefer M., Scharfe M., Schmidheini T., Schreer A., Skala J., Souciet J.-L., Steensma H.Y., Talla E., Thierry A., Vandenbol M., van der Aart Q.J.M., Van Dyck L., Vanoni M., Verhasselt P., Voet M., Volckaert G., Wambutt R., Watson M.D., Weber N., Wedler E., Wedler H., Wipfli P., Wolf K., Wright L.F., Zaccaria P., Zimmermann M., Zollner A., Kleine K.
Nature 387:81-84(1997) [PubMed: 9169869] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 96604 / S288c / FY1679.
[3]Saccharomyces Genome Database
Submitted (DEC-2009) to the EMBL/GenBank/DDBJ databases
Cited for: GENOME REANNOTATION.
Strain: ATCC 204508 / S288c.
[4]"Genome-wide expression analysis of NAP1 in Saccharomyces cerevisiae."
Ohkuni K., Shirahige K., Kikuchi A.
Biochem. Biophys. Res. Commun. 306:5-9(2003) [PubMed: 12788058] [Abstract]
Cited for: INDUCTION.
[5]"Sequence-based approach for identification of cell wall proteins in Saccharomyces cerevisiae."
Terashima H., Fukuchi S., Nakai K., Arisawa M., Hamada K., Yabuki N., Kitada K.
Curr. Genet. 40:311-316(2002) [PubMed: 11935221] [Abstract]
Cited for: SUBCELLULAR LOCATION.
[6]"Application of genome-wide expression analysis to identify molecular markers useful in monitoring industrial fermentations."
Higgins V.J., Rogers P.J., Dawes I.W.
Appl. Environ. Microbiol. 69:7535-7540(2003) [PubMed: 14660410] [Abstract]
Cited for: INDUCTION BY ZINC DEPLETION.
[7]"Global analysis of the glycoproteome in Saccharomyces cerevisiae reveals new roles for protein glycosylation in eukaryotes."
Kung L.A., Tao S.-C., Qian J., Smith M.G., Snyder M., Zhu H.
Mol. Syst. Biol. 5:308-308(2009) [PubMed: 19756047] [Abstract]
Cited for: GLYCOSYLATION [LARGE SCALE ANALYSIS].
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
X94357 Genomic DNA. Translation: CAA64129.1.
Z72780 Genomic DNA. Translation: CAA96978.1.
BK006941 Genomic DNA. Translation: DAA07861.1.
PIRS61603.
RefSeqNP_011256.1. NM_001181124.1.

3D structure databases

ProteinModelPortalP53058.
ModBaseSearch...

Protein-protein interaction databases

DIPDIP-4876N.
IntActP53058. 1 interaction.
MINTMINT-528523.
STRINGP53058.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblFungiYGL258W; YGL258W; YGL258W.
GeneID852634.
KEGGsce:YGL258W.
NMPDRfig|4932.3.peg.2359.

Organism-specific databases

CYGDYGL258w.
SGDS000003227. VEL1.

Phylogenomic databases

eggNOGfuNOG14842.
GeneTreeEFGT00050000008614.
HOGENOMHBG207970.
OMAFTTNINT.
OrthoDBEOG4MSH7Q.

Gene expression databases

ArrayExpressP53058.
GenevestigatorP53058.
GermOnlineYGL258W. Saccharomyces cerevisiae.

Family and domain databases

InterProIPR019435. Velum_formation_protein.
[Graphical view]
PfamPF10339. Vel1p. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio971873.

Entry information

Entry nameVEL1_YEAST
AccessionPrimary (citable) accession number: P53058
Secondary accession number(s): D6VV77
Entry history
Integrated into UniProtKB/Swiss-Prot: October 1, 1996
Last sequence update: October 1, 1996
Last modified: December 14, 2011
This is version 64 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Relevant documents

Yeast

Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD

Yeast chromosome VII

Yeast (Saccharomyces cerevisiae) chromosome VII: entries and gene names

SIMILARITY comments

Index of protein domains and families