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Protein

40S ribosomal protein S25

Gene

rps-25

Organism
Caenorhabditis elegans
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-CEL-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-CEL-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-CEL-6791226. Major pathway of rRNA processing in the nucleolus and cytosol.
R-CEL-72689. Formation of a pool of free 40S subunits.
R-CEL-72695. Formation of the ternary complex, and subsequently, the 43S complex.
R-CEL-72702. Ribosomal scanning and start codon recognition.
R-CEL-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-CEL-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-CEL-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
40S ribosomal protein S25
Gene namesi
Name:rps-25
ORF Names:K02B2.5
OrganismiCaenorhabditis elegans
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome IV

Organism-specific databases

WormBaseiK02B2.5; CE04691; WBGene00004494; rps-25.

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001928761 – 11740S ribosomal protein S25Add BLAST117

Proteomic databases

EPDiP52821.
PaxDbiP52821.
PeptideAtlasiP52821.
PRIDEiP52821.

Expressioni

Gene expression databases

BgeeiWBGene00004494.

Interactioni

Protein-protein interaction databases

IntActiP52821. 1 interactor.
STRINGi6239.K02B2.5.2.

Structurei

3D structure databases

ProteinModelPortaliP52821.
SMRiP52821.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG1767. Eukaryota.
COG4901. LUCA.
GeneTreeiENSGT00390000004856.
HOGENOMiHOG000203673.
InParanoidiP52821.
KOiK02975.
OMAiKEVPTFR.
OrthoDBiEOG091G134K.
PhylomeDBiP52821.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiView protein in InterPro
IPR004977. Ribosomal_S25.
IPR011991. WHTH_DNA-bd_dom.
PANTHERiPTHR12850. PTHR12850. 1 hit.
PfamiView protein in Pfam
PF03297. Ribosomal_S25. 1 hit.
ProDomiView protein in ProDom or Entries sharing at least one domain
PD012268. Ribosomal_S25. 1 hit.

Sequencei

Sequence statusi: Complete.

P52821-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPPKKDPKGG KAPPSKKKEG SGGGKAKKKK WSKGKVRDKL NNMVLFDQAT
60 70 80 90 100
YDKLYKEVIT YKLITPSVVS ERLKVRASLA KAGLKELQAK GLVKCVVHHH
110
GQVVYTRATK EADVIVE
Length:117
Mass (Da):12,912
Last modified:October 1, 1996 - v1
Checksum:iDEC7FC7A0E4EA66D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FO080181 Genomic DNA. Translation: CCD61804.1.
PIRiE88700.
RefSeqiNP_500895.1. NM_068494.5.
UniGeneiCel.8400.

Genome annotation databases

EnsemblMetazoaiK02B2.5; K02B2.5; WBGene00004494.
GeneIDi177365.
KEGGicel:CELE_K02B2.5.
UCSCiK02B2.5.1. c. elegans.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiRS25_CAEEL
AccessioniPrimary (citable) accession number: P52821
Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 1, 1996
Last sequence update: October 1, 1996
Last modified: June 7, 2017
This is version 97 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programCaenorhabditis annotation project

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Caenorhabditis elegans
    Caenorhabditis elegans: entries, gene names and cross-references to WormBase
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families