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Protein

40S ribosomal protein S25

Gene

rps-25

Organism
Caenorhabditis elegans
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-CEL-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-CEL-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-CEL-6791226. Major pathway of rRNA processing in the nucleolus and cytosol.
R-CEL-72689. Formation of a pool of free 40S subunits.
R-CEL-72695. Formation of the ternary complex, and subsequently, the 43S complex.
R-CEL-72702. Ribosomal scanning and start codon recognition.
R-CEL-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-CEL-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-CEL-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
40S ribosomal protein S25
Gene namesi
Name:rps-25
ORF Names:K02B2.5
OrganismiCaenorhabditis elegans
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome IV

Organism-specific databases

WormBaseiK02B2.5; CE04691; WBGene00004494; rps-25.

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001928761 – 11740S ribosomal protein S25Add BLAST117

Proteomic databases

EPDiP52821.
PaxDbiP52821.
PeptideAtlasiP52821.
PRIDEiP52821.

Expressioni

Gene expression databases

BgeeiWBGene00004494.

Interactioni

Protein-protein interaction databases

IntActiP52821. 1 interactor.
STRINGi6239.K02B2.5.2.

Structurei

3D structure databases

ProteinModelPortaliP52821.
SMRiP52821.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG1767. Eukaryota.
COG4901. LUCA.
GeneTreeiENSGT00390000004856.
HOGENOMiHOG000203673.
InParanoidiP52821.
KOiK02975.
OMAiKEVPTFR.
OrthoDBiEOG091G134K.
PhylomeDBiP52821.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiView protein in InterPro
IPR004977. Ribosomal_S25.
IPR011991. WHTH_DNA-bd_dom.
PANTHERiPTHR12850. PTHR12850. 1 hit.
PfamiView protein in Pfam
PF03297. Ribosomal_S25. 1 hit.
ProDomiView protein in ProDom or Entries sharing at least one domain
PD012268. Ribosomal_S25. 1 hit.

Sequencei

Sequence statusi: Complete.

P52821-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPPKKDPKGG KAPPSKKKEG SGGGKAKKKK WSKGKVRDKL NNMVLFDQAT
60 70 80 90 100
YDKLYKEVIT YKLITPSVVS ERLKVRASLA KAGLKELQAK GLVKCVVHHH
110
GQVVYTRATK EADVIVE
Length:117
Mass (Da):12,912
Last modified:October 1, 1996 - v1
Checksum:iDEC7FC7A0E4EA66D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FO080181 Genomic DNA. Translation: CCD61804.1.
PIRiE88700.
RefSeqiNP_500895.1. NM_068494.5.
UniGeneiCel.8400.

Genome annotation databases

EnsemblMetazoaiK02B2.5; K02B2.5; WBGene00004494.
GeneIDi177365.
KEGGicel:CELE_K02B2.5.
UCSCiK02B2.5.1. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FO080181 Genomic DNA. Translation: CCD61804.1.
PIRiE88700.
RefSeqiNP_500895.1. NM_068494.5.
UniGeneiCel.8400.

3D structure databases

ProteinModelPortaliP52821.
SMRiP52821.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiP52821. 1 interactor.
STRINGi6239.K02B2.5.2.

Proteomic databases

EPDiP52821.
PaxDbiP52821.
PeptideAtlasiP52821.
PRIDEiP52821.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiK02B2.5; K02B2.5; WBGene00004494.
GeneIDi177365.
KEGGicel:CELE_K02B2.5.
UCSCiK02B2.5.1. c. elegans.

Organism-specific databases

CTDi177365.
WormBaseiK02B2.5; CE04691; WBGene00004494; rps-25.

Phylogenomic databases

eggNOGiKOG1767. Eukaryota.
COG4901. LUCA.
GeneTreeiENSGT00390000004856.
HOGENOMiHOG000203673.
InParanoidiP52821.
KOiK02975.
OMAiKEVPTFR.
OrthoDBiEOG091G134K.
PhylomeDBiP52821.

Enzyme and pathway databases

ReactomeiR-CEL-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-CEL-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-CEL-6791226. Major pathway of rRNA processing in the nucleolus and cytosol.
R-CEL-72689. Formation of a pool of free 40S subunits.
R-CEL-72695. Formation of the ternary complex, and subsequently, the 43S complex.
R-CEL-72702. Ribosomal scanning and start codon recognition.
R-CEL-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-CEL-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-CEL-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Miscellaneous databases

PROiPR:P52821.

Gene expression databases

BgeeiWBGene00004494.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiView protein in InterPro
IPR004977. Ribosomal_S25.
IPR011991. WHTH_DNA-bd_dom.
PANTHERiPTHR12850. PTHR12850. 1 hit.
PfamiView protein in Pfam
PF03297. Ribosomal_S25. 1 hit.
ProDomiView protein in ProDom or Entries sharing at least one domain
PD012268. Ribosomal_S25. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiRS25_CAEEL
AccessioniPrimary (citable) accession number: P52821
Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 1, 1996
Last sequence update: October 1, 1996
Last modified: June 7, 2017
This is version 97 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programCaenorhabditis annotation project

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Caenorhabditis elegans
    Caenorhabditis elegans: entries, gene names and cross-references to WormBase
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.