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Protein

Uncharacterized HTH-type transcriptional regulator YbhD

Gene

ybhD

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: -Protein predictedi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi20 – 40H-T-H motifPROSITE-ProRule annotationAdd BLAST21

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-binding
Biological processTranscription, Transcription regulation

Enzyme and pathway databases

BioCyciEcoCyc:G6398-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized HTH-type transcriptional regulator YbhD
Gene namesi
Name:ybhD
Ordered Locus Names:b0768, JW5896
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13230 ybhD

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001057801 – 317Uncharacterized HTH-type transcriptional regulator YbhDAdd BLAST317

Proteomic databases

PaxDbiP52696
PRIDEiP52696

Interactioni

Protein-protein interaction databases

BioGridi4261144, 2 interactors
STRINGi316385.ECDH10B_0836

Structurei

3D structure databases

ProteinModelPortaliP52696
SMRiP52696
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini1 – 60HTH lysR-typePROSITE-ProRule annotationAdd BLAST60

Phylogenomic databases

eggNOGiENOG4105F04 Bacteria
ENOG410XRIM LUCA
HOGENOMiHOG000233514
InParanoidiP52696
OMAiKQCVIAD
PhylomeDBiP52696

Family and domain databases

Gene3Di1.10.10.10, 1 hit
InterProiView protein in InterPro
IPR005119 LysR_subst-bd
IPR000847 Tscrpt_reg_HTH_LysR
IPR036388 WH-like_DNA-bd_sf
IPR036390 WH_DNA-bd_sf
PfamiView protein in Pfam
PF00126 HTH_1, 1 hit
PF03466 LysR_substrate, 1 hit
PRINTSiPR00039 HTHLYSR
SUPFAMiSSF46785 SSF46785, 1 hit
PROSITEiView protein in PROSITE
PS50931 HTH_LYSR, 1 hit

Sequencei

Sequence statusi: Complete.

P52696-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKHELSSMKA FVILAESSSF NNAAKLLNIT QPALTRRIKK MEEDLHVQLF
60 70 80 90 100
ERTTRKVTLT KAGKRLLPEA RELIKKFDET LFNIRDMNAY HRGMVTLACI
110 120 130 140 150
PTAVFYFLPL AIGKFNELYP NIKVRILEQG TNNCMESVLC NESDFGINMN
160 170 180 190 200
NVTNSSIDFT PLVNEPFVLA CRRDHPLAKK QLVEWQELVG YKMIGVRSSS
210 220 230 240 250
GNRLLIEQQL ADKPWKLDWF YEVRHLSTSL GLVEAGLGIS ALPGLAMPHA
260 270 280 290 300
PYSSIIGIPL VEPVIRRTLG IIRRKDAVLS PAAERFFALL INLWTDDKDN
310
LWTNIVERQR HALQEIG
Length:317
Mass (Da):36,058
Last modified:April 27, 2001 - v3
Checksum:i8B02C4808B4665D2
GO

Sequence cautioni

The sequence BAA35432 differs from that shown. Reason: Erroneous initiation.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA Translation: AAC73855.2
AP009048 Genomic DNA Translation: BAA35432.1 Different initiation.
U27192 Genomic DNA No translation available.
PIRiH64812
RefSeqiNP_415289.4, NC_000913.3
WP_001350493.1, NZ_LN832404.1

Genome annotation databases

EnsemblBacteriaiAAC73855; AAC73855; b0768
BAA35432; BAA35432; BAA35432
GeneIDi944869
KEGGiecj:JW5896
eco:b0768
PATRICifig|1411691.4.peg.1510

Similar proteinsi

Entry informationi

Entry nameiYBHD_ECOLI
AccessioniPrimary (citable) accession number: P52696
Secondary accession number(s): P75761
Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 1, 1996
Last sequence update: April 27, 2001
Last modified: March 28, 2018
This is version 122 of the entry and version 3 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

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