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Protein

Putative electron transport protein YccM

Gene

yccM

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi251 – 2511Iron-sulfur 1 (4Fe-4S)By similarity
Metal bindingi254 – 2541Iron-sulfur 1 (4Fe-4S)By similarity
Metal bindingi257 – 2571Iron-sulfur 1 (4Fe-4S)By similarity
Metal bindingi261 – 2611Iron-sulfur 2 (4Fe-4S)By similarity
Metal bindingi278 – 2781Iron-sulfur 2 (4Fe-4S)By similarity
Metal bindingi281 – 2811Iron-sulfur 2 (4Fe-4S)By similarity
Metal bindingi284 – 2841Iron-sulfur 2 (4Fe-4S)By similarity
Metal bindingi288 – 2881Iron-sulfur 1 (4Fe-4S)By similarity

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Electron transport, Transport

Keywords - Ligandi

4Fe-4S, Iron, Iron-sulfur, Metal-binding

Enzyme and pathway databases

BioCyciEcoCyc:G6513-MONOMER.
ECOL316407:JW0977-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Putative electron transport protein YccM
Gene namesi
Name:yccM
Ordered Locus Names:b0992, JW0977
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13234. yccM.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Topological domaini1 – 3636CytoplasmicSequence analysisAdd
BLAST
Transmembranei37 – 5418HelicalSequence analysisAdd
BLAST
Topological domaini55 – 9137PeriplasmicSequence analysisAdd
BLAST
Transmembranei92 – 11423HelicalSequence analysisAdd
BLAST
Topological domaini115 – 15844CytoplasmicSequence analysisAdd
BLAST
Transmembranei159 – 18123HelicalSequence analysisAdd
BLAST
Topological domaini182 – 19514PeriplasmicSequence analysisAdd
BLAST
Transmembranei196 – 21823HelicalSequence analysisAdd
BLAST
Topological domaini219 – 30991CytoplasmicSequence analysisAdd
BLAST
Transmembranei310 – 33223HelicalSequence analysisAdd
BLAST
Topological domaini333 – 35725PeriplasmicSequence analysisAdd
BLAST

GO - Cellular componenti

  • integral component of membrane Source: UniProtKB-KW
  • plasma membrane Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 357357Putative electron transport protein YccMPRO_0000159303Add
BLAST

Proteomic databases

PaxDbiP52636.
PRIDEiP52636.

Interactioni

Protein-protein interaction databases

BioGridi4262838. 8 interactions.
STRINGi511145.b0992.

Structurei

3D structure databases

ProteinModelPortaliP52636.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini242 – 270294Fe-4S ferredoxin-type 1PROSITE-ProRule annotationAdd
BLAST
Domaini269 – 299314Fe-4S ferredoxin-type 2PROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 2 4Fe-4S ferredoxin-type domains.PROSITE-ProRule annotation

Keywords - Domaini

Repeat, Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4105HEE. Bacteria.
COG0348. LUCA.
HOGENOMiHOG000269662.
InParanoidiP52636.
OMAiNFWCRYL.
OrthoDBiEOG6N67XQ.
PhylomeDBiP52636.

Family and domain databases

InterProiIPR017896. 4Fe4S_Fe-S-bd.
IPR017900. 4Fe4S_Fe_S_CS.
[Graphical view]
PfamiPF12801. Fer4_5. 2 hits.
[Graphical view]
PROSITEiPS00198. 4FE4S_FER_1. 2 hits.
PS51379. 4FE4S_FER_2. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P52636-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAENKRTRWQ RRPGTTGGKL PWNDWRNATT WRKATQLLLL AMNIYIAITF
60 70 80 90 100
WYWVRYYETA SSTTFVARPG GIEGWLPIAG LMNLKYSLVT GQLPSVHAAA
110 120 130 140 150
MLLLVAFIVI SLLLKKAFCS WLCPVGTLSE LIGDLGNKLF GRQCVLPRWL
160 170 180 190 200
DIPLRGVKYL LLSFFIYIAL LMPAQAIHYF MLSPYSVVMD VKMLDFFRHM
210 220 230 240 250
GTATLISVTV LLIASLFIRH AWCRYLCPYG ALMGVVSLLS PFKIRRNAES
260 270 280 290 300
CIDCGKCAKN CPSRIPVDKL IQVRTVECTG CMTCVESCPV ASTLTFSLQK
310 320 330 340 350
PAANKKAFAL SGWLMTLLVL GIMFAVIGYA MYAGVWQSPV PEELYRRLIP

QAPMIGH
Length:357
Mass (Da):40,097
Last modified:November 1, 1997 - v2
Checksum:i074076F1DBBAF727
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti262 – 2621P → G (Ref. 4) Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74077.1.
AP009048 Genomic DNA. Translation: BAA36134.1.
U38541 Genomic DNA. No translation available.
PIRiF64840.
RefSeqiNP_415512.1. NC_000913.3.
WP_000829662.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74077; AAC74077; b0992.
BAA36134; BAA36134; BAA36134.
GeneIDi946295.
KEGGiecj:JW0977.
eco:b0992.
PATRICi32117209. VBIEscCol129921_1028.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74077.1.
AP009048 Genomic DNA. Translation: BAA36134.1.
U38541 Genomic DNA. No translation available.
PIRiF64840.
RefSeqiNP_415512.1. NC_000913.3.
WP_000829662.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP52636.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4262838. 8 interactions.
STRINGi511145.b0992.

Proteomic databases

PaxDbiP52636.
PRIDEiP52636.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74077; AAC74077; b0992.
BAA36134; BAA36134; BAA36134.
GeneIDi946295.
KEGGiecj:JW0977.
eco:b0992.
PATRICi32117209. VBIEscCol129921_1028.

Organism-specific databases

EchoBASEiEB3023.
EcoGeneiEG13234. yccM.

Phylogenomic databases

eggNOGiENOG4105HEE. Bacteria.
COG0348. LUCA.
HOGENOMiHOG000269662.
InParanoidiP52636.
OMAiNFWCRYL.
OrthoDBiEOG6N67XQ.
PhylomeDBiP52636.

Enzyme and pathway databases

BioCyciEcoCyc:G6513-MONOMER.
ECOL316407:JW0977-MONOMER.

Miscellaneous databases

PROiP52636.

Family and domain databases

InterProiIPR017896. 4Fe4S_Fe-S-bd.
IPR017900. 4Fe4S_Fe_S_CS.
[Graphical view]
PfamiPF12801. Fer4_5. 2 hits.
[Graphical view]
PROSITEiPS00198. 4FE4S_FER_1. 2 hits.
PS51379. 4FE4S_FER_2. 2 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  3. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  4. Rock C.O., Tsay J.-T., Jackowski S.
    Submitted (NOV-1995) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 262-357.
    Strain: K12.
  5. Rudd K.E.
    Unpublished observations (MAR-1996)
    Cited for: IDENTIFICATION.
  6. "Global topology analysis of the Escherichia coli inner membrane proteome."
    Daley D.O., Rapp M., Granseth E., Melen K., Drew D., von Heijne G.
    Science 308:1321-1323(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: TOPOLOGY [LARGE SCALE ANALYSIS].
    Strain: K12 / MG1655 / ATCC 47076.

Entry informationi

Entry nameiYCCM_ECOLI
AccessioniPrimary (citable) accession number: P52636
Secondary accession number(s): P75886, Q9R7Q0
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 1, 1996
Last sequence update: November 1, 1997
Last modified: January 20, 2016
This is version 122 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.