Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Uncharacterized HTH-type transcriptional regulator YgbI

Gene

ygbI

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi20 – 39H-T-H motifPROSITE-ProRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

  • transcription, DNA-templated Source: EcoCyc
Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Enzyme and pathway databases

BioCyciEcoCyc:G7416-MONOMER.
ECOL316407:JW2705-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized HTH-type transcriptional regulator YgbI
Gene namesi
Name:ygbI
Ordered Locus Names:b2735, JW2705
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13103. ygbI.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000502741 – 255Uncharacterized HTH-type transcriptional regulator YgbIAdd BLAST255

Proteomic databases

PaxDbiP52598.
PRIDEiP52598.

Interactioni

Protein-protein interaction databases

BioGridi4261442. 23 interactors.
DIPiDIP-12110N.
STRINGi511145.b2735.

Structurei

3D structure databases

ProteinModelPortaliP52598.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini3 – 58HTH deoR-typePROSITE-ProRule annotationAdd BLAST56

Sequence similaritiesi

Contains 1 HTH deoR-type DNA-binding domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG4105MVE. Bacteria.
COG1349. LUCA.
HOGENOMiHOG000224683.
PhylomeDBiP52598.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR014036. DeoR_C.
IPR001034. DeoR_HTH.
IPR018356. Tscrpt_reg_HTH_DeoR_CS.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00455. DeoRC. 1 hit.
PF08220. HTH_DeoR. 1 hit.
[Graphical view]
PRINTSiPR00037. HTHLACR.
SMARTiSM00420. HTH_DEOR. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiPS00894. HTH_DEOR_1. 1 hit.
PS51000. HTH_DEOR_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P52598-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MIPVERRQII LEMVAEKGIV SIAELTDRMN VSHMTIRRDL QKLEQQGAVV
60 70 80 90 100
LVSGGVQSPG RVAHEPSHQV KTALAMTQKA AIGKLAASLV QPGSCIYLDA
110 120 130 140 150
GTTTLAIAQH LIHMESLTVV TNDFVIADYL LDNSNCTIIH TGGAVCRENR
160 170 180 190 200
SCVGEAAATM LRSLMIDQAF ISASSWSVRG ISTPAEDKVT VKRAIASASR
210 220 230 240 250
QRVLVCDATK YGQVATWLAL PLSEFDQIIT DDGLPESASR ALVKQDLSLL

VAKNE
Length:255
Mass (Da):27,435
Last modified:November 24, 2009 - v2
Checksum:i78DD657A597AF4A3
GO

Sequence cautioni

The sequence AAA69245 differs from that shown. Reason: Erroneous initiation.Curated
The sequence BAE76812 differs from that shown. Reason: Erroneous initiation.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U29579 Genomic DNA. Translation: AAA69245.1. Different initiation.
U00096 Genomic DNA. Translation: AAC75777.2.
AP009048 Genomic DNA. Translation: BAE76812.1. Different initiation.
PIRiC65054.
RefSeqiNP_417215.2. NC_000913.3.
WP_001300386.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC75777; AAC75777; b2735.
BAE76812; BAE76812; BAE76812.
GeneIDi947204.
KEGGiecj:JW2705.
eco:b2735.
PATRICi32120872. VBIEscCol129921_2828.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U29579 Genomic DNA. Translation: AAA69245.1. Different initiation.
U00096 Genomic DNA. Translation: AAC75777.2.
AP009048 Genomic DNA. Translation: BAE76812.1. Different initiation.
PIRiC65054.
RefSeqiNP_417215.2. NC_000913.3.
WP_001300386.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP52598.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4261442. 23 interactors.
DIPiDIP-12110N.
STRINGi511145.b2735.

Proteomic databases

PaxDbiP52598.
PRIDEiP52598.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC75777; AAC75777; b2735.
BAE76812; BAE76812; BAE76812.
GeneIDi947204.
KEGGiecj:JW2705.
eco:b2735.
PATRICi32120872. VBIEscCol129921_2828.

Organism-specific databases

EchoBASEiEB2906.
EcoGeneiEG13103. ygbI.

Phylogenomic databases

eggNOGiENOG4105MVE. Bacteria.
COG1349. LUCA.
HOGENOMiHOG000224683.
PhylomeDBiP52598.

Enzyme and pathway databases

BioCyciEcoCyc:G7416-MONOMER.
ECOL316407:JW2705-MONOMER.

Miscellaneous databases

PROiP52598.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR014036. DeoR_C.
IPR001034. DeoR_HTH.
IPR018356. Tscrpt_reg_HTH_DeoR_CS.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00455. DeoRC. 1 hit.
PF08220. HTH_DeoR. 1 hit.
[Graphical view]
PRINTSiPR00037. HTHLACR.
SMARTiSM00420. HTH_DEOR. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiPS00894. HTH_DEOR_1. 1 hit.
PS51000. HTH_DEOR_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYGBI_ECOLI
AccessioniPrimary (citable) accession number: P52598
Secondary accession number(s): Q2MA94
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 1, 1996
Last sequence update: November 24, 2009
Last modified: November 2, 2016
This is version 117 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.