Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Protein U52

Gene

U52

Organism
Human herpesvirus 6A (strain Uganda-1102) (HHV-6 variant A) (Human B lymphotropic virus)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Names & Taxonomyi

Protein namesi
Recommended name:
Protein U52
Gene namesi
Name:U52
Synonyms:XKLF1
OrganismiHuman herpesvirus 6A (strain Uganda-1102) (HHV-6 variant A) (Human B lymphotropic virus)
Taxonomic identifieri10370 [NCBI]
Taxonomic lineageiVirusesdsDNA viruses, no RNA stageHerpesviralesHerpesviridaeBetaherpesvirinaeRoseolovirus
Virus hostiHomo sapiens (Human) [TaxID: 9606]
ProteomesiUP000009295: Genome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 258258Protein U52PRO_0000116222Add
BLAST

Family & Domainsi

Sequence similaritiesi

Belongs to the herpesviridae UL79 family.Curated

Family and domain databases

InterProiIPR004290. Herpes_UL79.
[Graphical view]
PfamiPF03049. Herpes_UL79. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P52469-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MTQIGQYIKL NDAVPNLILH ITTKLLRNEN LTSFKQEELL LIQHVCTSML
60 70 80 90 100
SHGIKILLLR ESLYNSGIGD IVILNRKISN NYWFRIFSIL KQHSDAELLR
110 120 130 140 150
HMFNESHSAY ISKKLHYSGN VSHMINFLFM DEFGVNLKIP EELICEGNIV
160 170 180 190 200
FSVGAIYNHR LLKICRFFNR FWGDQEREPT VRLICKHLWF AYLIMFGKFE
210 220 230 240 250
ISTLAYSQQR AEHKAGLFSF LQNDFKVFCG MSENPQLLDS SAIFDLTGIS

AEDLFSYE
Length:258
Mass (Da):30,030
Last modified:October 1, 1996 - v1
Checksum:i7F102B088E459FF2
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X83413 Genomic DNA. Translation: CAA58386.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X83413 Genomic DNA. Translation: CAA58386.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Family and domain databases

InterProiIPR004290. Herpes_UL79.
[Graphical view]
PfamiPF03049. Herpes_UL79. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The DNA sequence of human herpesvirus-6: structure, coding content, and genome evolution."
    Gompels U.A., Nicholas J., Lawrence G.L., Jones M., Thomson B.J., Martin M.E.D., Efstathiou S., Craxton M.A., Macaulay H.A.
    Virology 209:29-51(1995) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Entry informationi

Entry nameiUL79_HHV6U
AccessioniPrimary (citable) accession number: P52469
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 1, 1996
Last sequence update: October 1, 1996
Last modified: January 7, 2015
This is version 40 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.