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P52225 (CCMF_PSEFL) Reviewed, UniProtKB/Swiss-Prot

Last modified October 3, 2012. Version 56. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Cytochrome c-type biogenesis protein CcmF
Alternative name(s):
Cytochrome c-type biogenesis protein CycK
Gene names
Name:ccmF
Synonyms:cycK
OrganismPseudomonas fluorescens
Taxonomic identifier294 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Pseudomonadales › Pseudomonadaceae › Pseudomonas ›

Protein attributes

Sequence length660 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase By similarity.

Subcellular location

Cell inner membrane; Multi-pass membrane protein Potential.

Sequence similarities

Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 660660Cytochrome c-type biogenesis protein CcmF
PRO_0000201586

Regions

Transmembrane15 – 3521Helical; Potential
Transmembrane49 – 6921Helical; Potential
Transmembrane99 – 11921Helical; Potential
Transmembrane126 – 14621Helical; Potential
Transmembrane181 – 20121Helical; Potential
Transmembrane216 – 23621Helical; Potential
Transmembrane250 – 27021Helical; Potential
Transmembrane279 – 29921Helical; Potential
Transmembrane318 – 33821Helical; Potential
Transmembrane360 – 38021Helical; Potential
Transmembrane395 – 41521Helical; Potential
Transmembrane426 – 44621Helical; Potential
Transmembrane450 – 47021Helical; Potential
Transmembrane493 – 51321Helical; Potential
Transmembrane618 – 63821Helical; Potential

Sequences

Sequence LengthMass (Da)Tools
P52225 [UniParc].

Last modified October 1, 1996. Version 1.
Checksum: 3C6F4B578C56436B

FASTA66072,172
        10         20         30         40         50         60 
MTSALFIPEL GQLRMILALC FAVVQAVVPL LGAWPGDRLW MSLAQPARWG QFAFLLFAFG 

        70         80         90        100        110        120 
CLTYAFMTDD FSVAYVANNS NSALPWYYLF SAVWGAHEGS LLLWALILGG WTFAVSVFSR 

       130        140        150        160        170        180 
QLPQVMLARV LAVMGMISIG FLLFLIMTSN PFSRMLPQIP ADGHDLNPLL QDIGLIVHPP 

       190        200        210        220        230        240 
MLYMGYVGFS VAFAFAIAAL LGGRLDAAWA RWSRPWTIVA WAFLGIGITL GSWWAYYELG 

       250        260        270        280        290        300 
WGGWWFWDPV ENASFMPWLV GTALIHSLAV TEKRGVFKSW TVLLAIAAFS LTLLAAFLVR 

       310        320        330        340        350        360 
SGVLTSVHAF ASDPERGVFI LIFLLFVVGG SLTLFVRAPV VKSQVGFNLW SRETLLLGNN 

       370        380        390        400        410        420 
LVLVVAASMI LLGTLYPLVL DALSGAKLSV GPPYFNALFI PLMGLLMVVM AVGVLVRWKD 

       430        440        450        460        470        480 
TPVKWLVGML APVLLGSVAL AVVAGIAYGD FNWAVLATFL LAAWVLLAGV RDIFDKTRHK 

       490        500        510        520        530        540 
GLLKGLPTLT RSYWGMQIAH IGIAVCALGV VLSSQNSAER DLRLAPGESM DLAGYHFIFE 

       550        560        570        580        590        600 
GAKHFEGPNF TSDKGTVRVV RNGKEIAVLH PEKRLYTVQS SMMTEAGIDA GFTRDLYVAL 

       610        620        630        640        650        660 
GEPLGDGAWA VRVHVKPFVR WIWFGGLLTG FGGLLAALDR RYRVKVKSRV REALGMGAAV

« Hide

References

[1]Yang C.H., Azad H.R., Cooksey D.A.
Submitted (JAN-1996) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
Strain: 09906.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		U44827 Genomic DNA. Translation: AAC44226.1.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Family and domain databases

InterProIPR002541. Cyt_c_assembly.
IPR003567. Cyt_c_biogenesis.
IPR003568. Cyt_c_biogenesis_CcmF.
[Graphical view]
PfamPF01578. Cytochrom_C_asm. 1 hit.
[Graphical view]
PRINTSPR01410. CCBIOGENESIS.
PR01411. CCMFBIOGNSIS.
TIGRFAMsTIGR00353. nrfE. 1 hit.
ProtoNetSearch...

Entry information

Entry nameCCMF_PSEFL
AccessionPrimary (citable) accession number: P52225
Entry history
Integrated into UniProtKB/Swiss-Prot: October 1, 1996
Last sequence update: October 1, 1996
Last modified: October 3, 2012
This is version 56 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

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