Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Uncharacterized outer membrane protein YpjA

Gene

ypjA

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

BioCyciEcoCyc:G7382-MONOMER.
ECOL316407:JW5422-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized outer membrane protein YpjA
Gene namesi
Name:ypjA
Ordered Locus Names:b2647, JW5422
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13213. ypjA.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cell outer membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2929Sequence analysisAdd
BLAST
Chaini30 – 15261497Uncharacterized outer membrane protein YpjAPRO_0000204733Add
BLAST

Proteomic databases

PaxDbiP52143.

Interactioni

Protein-protein interaction databases

BioGridi4259215. 237 interactions.
DIPiDIP-12834N.
IntActiP52143. 1 interaction.
MINTiMINT-1218786.
STRINGi511145.b2647.

Structurei

3D structure databases

ProteinModelPortaliP52143.
SMRiP52143. Positions 55-1184, 1266-1526.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini1258 – 1526269AutotransporterPROSITE-ProRule annotationAdd
BLAST

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi1184 – 122037Pro-richAdd
BLAST

Sequence similaritiesi

Contains 1 autotransporter (TC 1.B.12) domain. [View classification]PROSITE-ProRule annotation

Keywords - Domaini

Signal, Transmembrane, Transmembrane beta strand

Phylogenomic databases

eggNOGiENOG4108MGN. Bacteria.
ENOG4110GG4. LUCA.
HOGENOMiHOG000009752.
InParanoidiP52143.
OMAiSTRSTMG.
OrthoDBiEOG6GR352.
PhylomeDBiP52143.

Family and domain databases

Gene3Di2.160.20.20. 5 hits.
2.40.128.130. 1 hit.
InterProiIPR030930. AIDA.
IPR005546. Autotransporte_beta.
IPR006315. OM_autotransptr_brl.
IPR012332. P22_tailspike_C-like.
IPR011050. Pectin_lyase_fold/virulence.
IPR004899. Pertactin_central.
IPR003991. Pertactin_virulence_factor.
[Graphical view]
PfamiPF16168. AIDA. 7 hits.
PF03797. Autotransporter. 1 hit.
PF03212. Pertactin. 1 hit.
[Graphical view]
PRINTSiPR01484. PRTACTNFAMLY.
SMARTiSM00869. Autotransporter. 1 hit.
[Graphical view]
SUPFAMiSSF103515. SSF103515. 1 hit.
SSF51126. SSF51126. 1 hit.
TIGRFAMsiTIGR01414. autotrans_barl. 1 hit.
TIGR04415. O_hepto_targRPT. 6 hits.
PROSITEiPS51208. AUTOTRANSPORTER. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P52143-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNRTSPYYCR RSVLSLLISA LIYAPPGMAA FTTNVIGVVN DETVDGNQKV
60 70 80 90 100
DERGTTNNTH IINHGQQNVH GGVSNGSLIE SGGYQDIGSH NNFVGQANNT
110 120 130 140 150
TINGGRQSIH DGGISTGTTI ESGNQDVYKG GISNGTTIKG GASRVEGGSA
160 170 180 190 200
NGILIDGGSQ IVKVQGHADG TTINKSGSQD VVQGSLATNT TINGGRQYVE
210 220 230 240 250
QSTVETTTIK NGGEQRVYES RALDTTIEGG TQSLNSKSTA KNTHIYSGGT
260 270 280 290 300
QIVDNTSTSD VIEVYSGGVL DVRGGTATNV TQHDGAILKT NTNGTTVSGT
310 320 330 340 350
NSEGAFSIHN HVADNVLLEN GGHLDINAYG SANKTIIKDK GTMSVLTNAK
360 370 380 390 400
ADATRIDNGG VMDVAGNATN TIINGGTQNI NNYGIATGTN INSGTQNIKS
410 420 430 440 450
GGKADTTIIS SGSRQVVEKD GTAIGSNISA GGSLIVYTGG IAHGVNQETG
460 470 480 490 500
SALVANTGAG TDIEGYNKLS HFTITGGEAN YVVLENTGEL TVVAKTSAKN
510 520 530 540 550
TTIDTGGKLI VQKEAKTDST RLNNGGVLEV QDGGEAKHVE QQSGGALIAS
560 570 580 590 600
TTSGTLIEGT NSYGDAFYIR NSEAKNVVLE NAGSLTVVTG SRAVDTIINA
610 620 630 640 650
NGKMDVYGKD VGTVLNSAGT QTIYASATSD KANIKGGKQT VYGLATEANI
660 670 680 690 700
ESGEQIVDGG STEKTHINGG TQTVQNYGKA INTDIVSGLQ QIMANGTAEG
710 720 730 740 750
SIINGGSQVV NEGGLAENSV LNDGGTLDVR EKGSATGIQQ SSQGALVATT
760 770 780 790 800
RATRVTGTRA DGVAFSIEQG AANNILLANG GVLTVESDTS SDKTQVNMGG
810 820 830 840 850
REIVKTKATA TGTTLTGGEQ IVEGVANETT INDGGIQTVS ANGEAIKTKI
860 870 880 890 900
NEGGTLTVND NGKATDIVQN SGAALQTSTA NGIEISGTHQ YGTFSISGNL
910 920 930 940 950
ATNMLLENGG NLLVLAGTEA RDSTVGKGGA MQNLGQDSAT KVNSGGQYTL
960 970 980 990 1000
GRSKDEFQAL ARAEDLQVAG GTAIVYAGTL ADASVSGATG SLSLMTPRDN
1010 1020 1030 1040 1050
VTPVKLEGAV RITDSATLTL GNGVDTTLAD LTAASRGSVW LNSNNSCAGT
1060 1070 1080 1090 1100
SNCEYRVNSL LLNDGDVYLS AQTAAPATTN GIYNTLTTNE LSGSGNFYLH
1110 1120 1130 1140 1150
TNVAGSRGDQ LVVNNNATGN FKIFVQDTGV SPQSDDAMTL VKTGGGDASF
1160 1170 1180 1190 1200
TLGNTGGFVD LGTYEYVLKS DGNSNWNLTN DVKPNPDPIP NPKPDPKPDP
1210 1220 1230 1240 1250
KPDPNPKPDP TPDPTPTPVP EKRITPSTAA VLNMAATLPL VFDAELNSIR
1260 1270 1280 1290 1300
ERLNIMKASP HNNNVWGATY NTRNNVTTDA GAGFEQTLTG MTVGIDSRND
1310 1320 1330 1340 1350
IPEGITTLGA FMGYSHSHIG FDRGGHGSVG SYSLGGYASW EHESGFYLDG
1360 1370 1380 1390 1400
VVKLNRFKSN VAGKMSSGGA ANGSYHSNGL GGHIETGMRF TDGNWNLTPY
1410 1420 1430 1440 1450
ASLTGFTADN PEYHLSNGMK SKSVDTRSIY RELGATLSYN MRLGNGMEVE
1460 1470 1480 1490 1500
PWLKAAVRKE FVDDNRVKVN SDGNFVNYLS GRRGIYQAGI KASFSSTLSG
1510 1520
HLGVGYSHSA GVESPWNAVA GVNWSF
Length:1,526
Mass (Da):157,500
Last modified:November 13, 2007 - v3
Checksum:iF8EEEFA907364EB6
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U36840 Genomic DNA. Translation: AAA79815.1. Sequence problems.
U00096 Genomic DNA. Translation: AAC75695.2.
AP009048 Genomic DNA. Translation: BAA16514.2.
PIRiA65044.
RefSeqiNP_417134.2. NC_000913.3.

Genome annotation databases

EnsemblBacteriaiAAC75695; AAC75695; b2647.
BAA16514; BAA16514; BAA16514.
GeneIDi948630.
KEGGiecj:JW5422.
eco:b2647.
PATRICi32120689. VBIEscCol129921_2743.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U36840 Genomic DNA. Translation: AAA79815.1. Sequence problems.
U00096 Genomic DNA. Translation: AAC75695.2.
AP009048 Genomic DNA. Translation: BAA16514.2.
PIRiA65044.
RefSeqiNP_417134.2. NC_000913.3.

3D structure databases

ProteinModelPortaliP52143.
SMRiP52143. Positions 55-1184, 1266-1526.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4259215. 237 interactions.
DIPiDIP-12834N.
IntActiP52143. 1 interaction.
MINTiMINT-1218786.
STRINGi511145.b2647.

Proteomic databases

PaxDbiP52143.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC75695; AAC75695; b2647.
BAA16514; BAA16514; BAA16514.
GeneIDi948630.
KEGGiecj:JW5422.
eco:b2647.
PATRICi32120689. VBIEscCol129921_2743.

Organism-specific databases

EchoBASEiEB3005.
EcoGeneiEG13213. ypjA.

Phylogenomic databases

eggNOGiENOG4108MGN. Bacteria.
ENOG4110GG4. LUCA.
HOGENOMiHOG000009752.
InParanoidiP52143.
OMAiSTRSTMG.
OrthoDBiEOG6GR352.
PhylomeDBiP52143.

Enzyme and pathway databases

BioCyciEcoCyc:G7382-MONOMER.
ECOL316407:JW5422-MONOMER.

Miscellaneous databases

PROiP52143.

Family and domain databases

Gene3Di2.160.20.20. 5 hits.
2.40.128.130. 1 hit.
InterProiIPR030930. AIDA.
IPR005546. Autotransporte_beta.
IPR006315. OM_autotransptr_brl.
IPR012332. P22_tailspike_C-like.
IPR011050. Pectin_lyase_fold/virulence.
IPR004899. Pertactin_central.
IPR003991. Pertactin_virulence_factor.
[Graphical view]
PfamiPF16168. AIDA. 7 hits.
PF03797. Autotransporter. 1 hit.
PF03212. Pertactin. 1 hit.
[Graphical view]
PRINTSiPR01484. PRTACTNFAMLY.
SMARTiSM00869. Autotransporter. 1 hit.
[Graphical view]
SUPFAMiSSF103515. SSF103515. 1 hit.
SSF51126. SSF51126. 1 hit.
TIGRFAMsiTIGR01414. autotrans_barl. 1 hit.
TIGR04415. O_hepto_targRPT. 6 hits.
PROSITEiPS51208. AUTOTRANSPORTER. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Construction of a contiguous 874-kb sequence of the Escherichia coli-K12 genome corresponding to 50.0-68.8 min on the linkage map and analysis of its sequence features."
    Yamamoto Y., Aiba H., Baba T., Hayashi K., Inada T., Isono K., Itoh T., Kimura S., Kitagawa M., Makino K., Miki T., Mitsuhashi N., Mizobuchi K., Mori H., Nakade S., Nakamura Y., Nashimoto H., Oshima T.
    , Oyama S., Saito N., Sampei G., Satoh Y., Sivasundaram S., Tagami H., Takahashi H., Takeda J., Takemoto K., Uehara K., Wada C., Yamagata S., Horiuchi T.
    DNA Res. 4:91-113(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  3. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.

Entry informationi

Entry nameiYPJA_ECOLI
AccessioniPrimary (citable) accession number: P52143
Secondary accession number(s): P76610, P77017, P77019
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 1, 1996
Last sequence update: November 13, 2007
Last modified: January 20, 2016
This is version 123 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.